XLOC_022056 (hm13)


Basic Information

Item Value
gene id XLOC_022056
gene name hm13
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 480423 ~ 493384 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043610
ACCCgccagaagaagaggaagaacaCTCACCGGGCTGATTTTAGGAAACGTGGCCTTAACAGCGATCGGTTCCCCCTCAATGAGCAGCGCACTCAGTGACACTCTAATTAAACCGCTTGTATCTAACGTTAAGCCTATCCCGGTAACCGAGCGCGCTGAAACATGGCGGATGTGGAGCAGACCGCGCCGGCGCCCGACGGCTCAAGTAATGGGTCGGATTTGGTAAACGGGACTGCGGGCCGGTTCGTGTCCAGCGCTGAGGGTACGGCTCTGGCGTACGGCAGCCTGCTGCTCATGGCCCTGCTGCCCATCTTCTTCGGGGCGCTCAGGTCTGTGGGATGCTCCAAATCCAAGGGATCTTCTGATATGCCCGAGACCATCACCAGCAGAGATGCAGCTCGATTCCCCATCATCGCCAGCTGCACACTCTTCGGCCTCTACCTCTTTTTCAAGGTTTTCTCACAGGAGTATGTCAACATGCTGTTATCCATGTATTTCTTTGTGCTGGGAATATTAGCGCTGTCTCACACAATGAGTCCCTTCATGTGCAGAGTTTTCCCTGCTAACCTGTCAAATAAGCAGTACCAGCTGCTGTTCACACAGGGCTCAGGAGAAAGCAAAgaggAAATAGTCAACTATGAGTTTGACACGAAGGATCTGATCTGCCTGTGCATCAGCAGTGTGGTAGGGGTCTGGTACGTCCTCAAGAAGCACTGGATAGCCAATAACCTGTTTGGTCTGGCGTTTGCTCTGAACGGCGTGGAGCTGCTGCACCTCAATAACGTCAGCACCGGATGCATTCTGCTGGGAGGACTCTTCGTTTACGACGTCTTCTGGGTTTTTGGCACTAATGTTATGGTGACAGTTGCCAAGTCCTTTGAAGCCCCGATCAAGTTGGTTTTCCCTCAAGATTTGCTGGAGAAAGGTTTGGGCGCCAGTAACTTTGCCATGCTGGGACTCGGGGACATTGTTATTCCAGgaATTTTTATTGCTCTGCTCCTGCGCTTTGATGTCAGTCTGAAGAAGAACACACGAACATACTTCTACACCAGCTTCCTGGCTTACATTTTTGGCCTGGGTCTGACCATTTTCGTGATGCACACCTTTAAACATGCTCAGCCTGCTTTGCTGTACCTGGTGCCTGCTTGTGTTGGATTTCCAGTGCTGGTGGCACTTGTTAAAGGAGAACTAACCGAGATGTTCAGGTACGAGGAGGAAACGCCATCAAAAGAAGAGACGACCGAATctgaaaaagacaaataaaagccCCAAATCAGCCCTCATTCATGTTTTGCATTTGTCATAGTGATGTGGTCGCGCACAGACTCCTCTCCGTCTGCTCATGGCGGTGACGTTGTGTATTTCTGAACTTCTTTTAACGCCGCGCAACAGCTTTCTCAGTGCCTCTGTAATGAAATCCCCCTGTTCCTTTATTCACCTCAGCATTTGGAAACATTGGTTATATTCACTTCCAAAGTTATATCTGTTAGAATTATGAAGTATTTGGTTGGTAGACGTAAGACTTTCCGCATGTGATTCGATATTCAGATATCATCCGAATCTAAGGTCCGGCACCTACTCCATGTACtcctattttgtttgtttttattgtaggaTCTCATGAGGGATTCGGTTTCTAGCtgtctgttttatttaataagaCAAAGGCATTCTGGATTacatgtgttgttttattttatgcaaactgTGGGACCAATAAGAAAGAGACTGTTTGTTTTTCTCCCCCTGACGGAAGTTAAAGGATGAACTTGAGTAGTGCCATATTGTTTCTTGCTCATATTTAATGCACCTCATGCTCGCCATGGTTTGACCGTCTCTTCTTGTGTAACGCTTTTCTCAGTGTAAATGTTTGAGCTTATATGAGGAGCACTGTTttgattttgtcttttatttgcATTAAATGTGTGGTGTTTACCAATCTGGAAAAACACA
>TCONS_00043611
TTCTGAAGCTCTTTTAAAAACCTTGAAAACACTGGATTAAATATCAAGAACTTCATTTTCATGCCAATAGTGTTTTAGTTTTGACAGAAGTGTTTGTGCGTTTGCTGACAGCACTGGATAGCCAATAACCTGTTTGGTCTGGCGTTTGCTCTGAACGGCGTGGAGCTGCTGCACCTCAATAACGTCAGCACCGGATGCATTCTGCTGGGAGGACTCTTCGTTTACGACGTCTTCTGGGTTTTTGGCACTAATGTTATGGTGACAGTTGCCAAGTCCTTTGAAGCCCCGATCAAGTTGGTTTTCCCTCAAGATTTGCTGGAGAAAGGTTTGGGCGCCAGTAACTTTGCCATGCTGGGACTCGGGGACATTGTTATTCCAGgaATTTTTATTGCTCTGCTCCTGCGCTTTGATGTCAGTCTGAAGAAGAACACACGAACATACTTCTACACCAGCTTCCTGGCTTACATTTTTGGCCTGGGTCTGACCATTTTCGTGATGCACACCTTTAAACATGCTCAGCCTGCTTTGCTGTACCTGGTGCCTGCTTGTGTTGGATTTCCAGTGCTGGTGGCACTTGTTAAAGGAGAACTAACCGAGATGTTCAGGTACGAGGAGGAAACGCCATCAAAAGAAGAGACGACCGAATctgaaaaagacaaataaaagccCCAAATCAGCCCTCATTCATGTTTTGCATTTGTCATAGTGATGTGGTCGCGCACAGACTCCTCTCCGTCTGCTCATGGCGG

Function

symbol description
hm13 Predicted to enable aspartic endopeptidase activity, intramembrane cleaving. Acts upstream of or within regulation of neuron apoptotic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of cytoplasmic side of endoplasmic reticulum membrane and integral component of lumenal side of endoplasmic reticulum membrane. Is expressed in several structures, including alar plate midbrain region; axial mesoderm; digestive system; immature eye; and nervous system. Orthologous to human HM13 (histocompatibility minor 13).

GO:

id name namespace
GO:0006465 signal peptide processing biological_process
GO:0043523 regulation of neuron apoptotic process biological_process
GO:0033619 membrane protein proteolysis biological_process
GO:0071556 integral component of lumenal side of endoplasmic reticulum membrane cellular_component
GO:0071458 integral component of cytoplasmic side of endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004190 aspartic-type endopeptidase activity molecular_function
GO:0042500 aspartic endopeptidase activity, intramembrane cleaving molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-020802-3 Predicted to enable aspartic endopeptidase activity, intramembrane cleaving. Acts upstream of or within regulation of neuron apoptotic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of cytoplasmic side of endoplasmic reticulum membrane and integral component of lumenal side of endoplasmic reticulum membrane. Is expressed in several structures, including alar plate midbrain region; axial mesoderm; digestive system; immature eye; and nervous system. Orthologous to human HM13 (histocompatibility minor 13).

Ensembl:

ensembl_id ENSDARG00000037846

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043610 False 1953 mRNA 0.47 12 480423 493384
TCONS_00043611 True 749 processed_transcript 0.46 7 481027 489197

Neighbor

gene id symbol gene type direction distance location
XLOC_022055 si:ch73-181d5.4 coding downstream 2222 457569 ~ 478201 (-)
XLOC_022054 tspan2b coding downstream 28058 423351 ~ 452365 (-)
XLOC_022053 NA coding downstream 110426 369131 ~ 369997 (-)
XLOC_022052 uhrf1bp1 coding downstream 128488 320624 ~ 351935 (-)
XLOC_022051 anks1aa coding downstream 173627 280046 ~ 306796 (-)
XLOC_022057 col9a3 coding upstream 2130 495514 ~ 524780 (-)
XLOC_022058 samhd1 coding upstream 33118 526502 ~ 545942 (-)
XLOC_022059 mtg2 coding upstream 53723 547107 ~ 552539 (-)
XLOC_022060 kcnk15 coding upstream 77133 570517 ~ 574733 (-)
XLOC_022061 l1camb coding upstream 103698 597082 ~ 637347 (-)
XLOC_022049 NA non-coding downstream 227194 250690 ~ 253229 (-)
XLOC_022068 NA non-coding upstream 525500 1018884 ~ 1034033 (-)
XLOC_022071 NA non-coding upstream 584532 1077916 ~ 1079365 (-)
XLOC_022072 NA non-coding upstream 609811 1103195 ~ 1106137 (-)
XLOC_022073 CABZ01079870.1 non-coding upstream 624921 1118305 ~ 1123971 (-)
XLOC_022074 CABZ01079872.1 non-coding upstream 631130 1124514 ~ 1140060 (-)

Expression


Co-expression Network