XLOC_022061 (l1camb)


Basic Information

Item Value
gene id XLOC_022061
gene name l1camb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 597082 ~ 637347 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043617
TTCATTGGCCGAGGAGaacagagagaaacacacacacacagaagaacagAGCAAGGCGTGTCCCGCACCATCCAGACCAACACACAGATTCACCTGCAGAGGATTGATCCAGACGCGAGCCTGTCCCCCAGACGTCcttcagtctgtgtgtgtgtctggagtCGGGGCTGTTTTCATGTTTGCTCCAGAATGCCTCCAGTGCAGAGTCAGCCTGCAGGCAGAAGAGGACAGAAGCGCACTCATCTTCATCTGCTGCTCCTCTTCCTCAGCGCGGCACAAACCCATGCATACATTCAGATCCCACACGACTACACATATAACAAGCTAAAACAGGCTCCAGAGTTCACGACTCAGCCCGTGTCTCACACCGCTTTCTCCCTGGATGATGTTAATCTGGCCTGTGAAGCCAGCGGAGACCCATCGCCCAGTTTTCGCTGGGTCAAAGATGGAAAGCAGTTTGGGGAGGTTCTGTCAGAGTCTGGAACTCTGACACCGCATCCAACAATGGACCTGCACTTCTATCAGGGCACATATCGCTGCTATGCTGCAAACGAGCTGGGAACCGCCGTCTCTAACCTGGTGCATCTGACCACAGAGCCCGTCCCAAGCTTGGCCAAAGTGAAGAAGCAAAAACGAAGAGCGTATGAGGTGGGGGAAAGTGCAGTCCTCCGCTGTAACCCTCCCAAGAGTTCTGTCACCCCGAAAATACATTGGATGGACATGCagTTTCACCACAttcctctgaatgagcgagtgaCCATAAGCCGGGATGGAAATCTATATTTTGCCAATCTTATAGCCAACGACAGCAGAGACGACTACACCTGTAATGCGCACTACATCAACGCCAGCATCATCCTGCCTAAAGAGCCCATGTCCATCTACGTCACTCCCTCAAACTCTGTGGTGAAGAATCGACGGGCGAAGCTGCACCACCCAGCCGGAGCCCGCAGCTCATACCTGGTGCTGAGGGGTCAAACACTGACCCTGGAGTGTATCCCAGAAGGCCTGCCAACTCCAGAGGTGCACTGGGATAGAATAGACTCCGCTCTGTCTCCAAACCGCACCAAGAAGCTGTACAACAACCGCTGGCTGCAGATAGACAATGTGCTGGAGTCTGATGATGGAGAGTACGTCTGCACTGCCAGAAACAGCGAGAACTCCGTCAAACACCACTACACTGTCACAGTAGAGGCTGCTCCATACTGGACCCGGAGGCCTGAAGAGCATCTGTATGCCCCGGGAGAGACGGTCAGACTGGACTGTCAGGCCGACGGTATCCCTGCCCCGAACATCACATGGAGCATCAATGGAGTTCCTGTTTCAGgcACGGATGTGGACCCGAGACGGCGTGTGAGTTCTGGGAAACTGATCCTGTCCAATGTGGAGTTCAGCGATACGGCAGTGTATCAGTGCGAGGCTGTCAACAAACACGGAAGCATCCTGATCAACACACACGTGCATGTTGTTGAACTGCCAGCTCAGATCCTGACCCCAGATGAGCGCCTCTATCAGGCCACTGCAGGACAGACTGTAATGTTGGACTGCAGAACGTTCGGGTCGCCGCTGCCCAAAATACACTGGGAGATTCTAGACTCTATTCCAGCTCTGTCCAATGCTAAAATATCTCAGATGACCAACGGAAGTCTTAAGATCAGTAATGTGAGTGAAGAAGACAGCAACAGATACACATGTTCAGTGAGCGAAACCAACAAGAGCATCAGTGCGGAGCTAGAGGTCCTGAACAGAACAAAGATTGTTGGACCTCCCCAAAATCTCCATGTTATACGTGGAAGTGATGCGATTTTACACTGCAAATACACAGTGGACCACAACTTAAAATCCCCCACGGTTCAGTGGAAAAAGGATGGACACAAGATCACAGCATCTACAAGCAATGACAAATACCATGAAATCGAAGGCTCTCTGAAGGTCTGGGATGTTCAGATGGAGGATATGGGCATCTACAGCTGTGAGGTCAGCACTACACTGGACTCAGACACTGCCAGCGGATACATCACTGTTCAGGATAAACCTGATCCTCCTCAATCTCTGAAGCTGTCTGAAAAGATGGAGCGTAGCGTGACCATCTCCTGGATGCCGAGCGTCGAAAACAACAGTCCTGTTACGGAGTATGTGATTGAGATGAACGAGGGGGAGACTCCAGACGAGGGTCAATGGCAGAAATACAGGAGTGTTTCTCAGGACATCCGACAGCTGGAGATCCACCTGCAGCCCTACAGCAAATACCACTTCCAGATCCGGGCAGTGAACAGCATAGGAACCAGTGCTCCCAGCGAGTCCTCGCTCTCCTACAGCACTCCAGCAGCCAAACCGGACACGAACCCAGAGAATGTGATGACCCTGTCCACTGACCCAAAGAGTATGATCATCTCATGGCAGGAGATGGATCGGCGTCAGTTTAACGGGCCGGGGTTCCAGTATAAGGTGTTCTGGCGTCGAGCAGCAGACAGCGGTGCACACTGGACAGAGAGCAGCGTCTCCAATCCTCCACTGATGGTCAATAACACCGGAACATTCGTCTCCTTTGAGATTAAAGTTCAGGCCGTCAATGATCTTGGTGCTGCCCCAGAACCGCTCACTGTGATCGGCTACTCCGGGGAAGACTTTCCTCTGGAGGCTCCGTCAGCGTTGTCTGTCACTGAGCTGCAAAAAACTTCTGTGATGGTGAGATGGAGTCCAGTCAGGCCGGAGTCTGTCCGGGGACACCTACTGGGATACAAGATCTATTTGAGAATGAAGGGTCCCAGTGGGAGACTCCGGGCCGGGCGGTCTCCAGCAGTGGGTAATCCCACAGTGATAGAGGTCCCTGCAGACGCGGCAGAGAAGATCGTGAGCGACCTGCAGTATTACTCAGATTATACTCTGACCATCACTGCGTTCAACAGCAAAGGTGAAGGTCCACATTCAGAGGAGAGCAGCTTCAGCACTCCGGAGGGCGCTCCCGGACCCGTGTTATTCCTGCCCTTCGACAGCCCGTCTGAGAGCGAGATCACCCTGCGCTGGGAAGCACCACACAAACCCAACGGGGAGATCAGAGGATACCTGCTGCAGTACCAGGAggTTGTGACTGGCAGTGAGAGCCCACAGCATGTGGAGTCCATCGATCTGCCGGCGGTGACGGAGTTCACACTGAAGAATCTGAATCCGGAGAGCCGCTACACCTTCCACCTCAGTGCCCGAAACAGTGCCGGCGATGGGGCTCCGGCCATACAGAGCGGCGCCACCCTGCTGGACGGAGAACCTCCATCTGTAATCAACATGACAGCTGGAGAAACCTCCGTCAACCTCAGCTGGGTTCCTGGAGACCGACATCGAAACGTTGGCTTTAGTTTCCGTTACCTGAAAAAAATAGAGGGTGCTGAATGGGAAGAGTCGGAGAAGATCAACTCCACACAGGCCTTCTATCAGCTGCAGGGTCTGGATTCAGGCGTTATTTACCATCTGCAGGTCCTGTCCGGAAACACTTCTTATGACTGGGATTTCAAAACGATATACAGGCGAGagTTGCACAAGTCGCCTAGCAACTTTGCGACGGAGGGCTGGTTCATTGGTCTGATCAGCGCTCTGGTTCTGCTGCTGCTGGTTCTGCTCCTCCTCTGCTACATCAAGAAGAGCAAAGGAGGGAAATATTCAGTGAAAGATAAAGAGGAGGGTCAGGGGGACGCAGCAAACCAAAAACTGAAGGATGACGCCTTCGGAGAGTACAGATCTCTGGAGAGTGATATGGAGAAGTGCTCCATCAGCCAGCCGTCGGGGTGCGAGAGCAAGCGCAGCAGCAACGACAGTCTGGCGGATTACGGGGACAGCGTGGACATCCAGTTCAATGAGGACGGCTCCTTCATCGGGCAGTACAGCGGTCGAAGGGATCCACGCGGGCACGACAGCTCTGGCGCCGTGTCGCCGGTCAACCCCAACATGCCTCCGCCCAGCCACAGCTTCCCCACCTCCGTCACCGGGATCCTGGGGCCTAATTAATGATGCATCATGGGCCCTTGAGGGACTTTAGACAGGATAACGATTTCAGGACGGTCATGATTAAAAGTCGTCATCTGCAGACACTCACACATCGACACACACTCATTCCACAGAACGATTTCTCGTAACATTCCACCCTGAACACTGTTTACAGCGCCCATTCCTCTGAGTCCTCACCCGCTGTAGGGATCGGGGTCCTGCTGGGTGTTGCCGCAGCCGGTTCAGCATTTAAGCTCATTGCACACTGATGCCGAAATGTCCATGTTCAAAAATACATCTAACCTCAGGTTGTGTCAGTCGCATTGACACACTGCCTACGAAACTTTCATCGGTTTTCAATCAGGCGGAAGGCAAAATCCATCAGACCGTCACTCGCAGTACAGATCACTTCAAGACAAACACAGTGTGTGAAATAAAGACAGAGTGTGTAggatggttgagaaacactgctgtagacAACTGTTTGtgcgcatgtgcgtgtgtgtgcttgcatgtgtgtgtgtgagtctgccAGTCTCTGTTTAGAATTC
>TCONS_00043618
CAATGGATTTACCAGCAGTTGCTCTGATaattgtcttgacaaatgaactAATATGAAAGACTGAGCCTGTCATCACCCTGGAGCTGAAGCCCACAAGAGGTCTGACCTGAGTCTTCTACACGGTTCGACACTGTGGGCGTTTCATGGAGTCTTAGGGCTTGGTTTGGAACCGCACTTACACTCCAGCCACCAAGACCGTCCCAAGCTTGGCCAAAGTGAAGAAGCAAAAACGAAGAGCGTATGAGGTGGGGGAAAGTGCAGTCCTCCGCTGTAACCCTCCCAAGAGTTCTGTCACCCCGAAAATACATTGGATGGACATGCagTTTCACCACAttcctctgaatgagcgagtgaCCATAAGCCGGGATGGAAATCTATATTTTGCCAATCTTATAGCCAACGACA

Function

symbol description
l1camb Involved in cartilage morphogenesis and positive regulation of gene expression. Acts upstream of or within axon regeneration. Predicted to be located in axonal growth cone. Is expressed in nervous system; pectoral fin; and pharyngeal arch. Human ortholog(s) of this gene implicated in MASA syndrome; hydrocephalus; ovarian carcinoma; pancreatic cancer; and schizophrenia. Orthologous to human L1CAM (L1 cell adhesion molecule).

GO:

id name namespace
GO:0010628 positive regulation of gene expression biological_process
GO:0030154 cell differentiation biological_process
GO:0045773 positive regulation of axon extension biological_process
GO:0007275 multicellular organism development biological_process
GO:0031103 axon regeneration biological_process
GO:0007399 nervous system development biological_process
GO:0060536 cartilage morphogenesis biological_process
GO:0007155 cell adhesion biological_process
GO:0042995 cell projection cellular_component
GO:0005886 plasma membrane cellular_component
GO:0044295 axonal growth cone cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-980526-512 Involved in cartilage morphogenesis and positive regulation of gene expression. Acts upstream of or within axon regeneration. Predicted to be located in axonal growth cone. Is expressed in nervous system; pectoral fin; and pharyngeal arch. Human ortholog(s) of this gene implicated in MASA syndrome; hydrocephalus; ovarian carcinoma; pancreatic cancer; and schizophrenia. Orthologous to human L1CAM (L1 cell adhesion molecule).

Ensembl:

ensembl_id ENSDARG00000015025

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043617 False 4529 mRNA 0.53 29 597082 637347
TCONS_00043618 True 405 processed_transcript 0.48 3 618553 621086

Neighbor

gene id symbol gene type direction distance location
XLOC_022060 kcnk15 coding downstream 22349 570517 ~ 574733 (-)
XLOC_022059 mtg2 coding downstream 44543 547107 ~ 552539 (-)
XLOC_022058 samhd1 coding downstream 51140 526502 ~ 545942 (-)
XLOC_022057 col9a3 coding downstream 72302 495514 ~ 524780 (-)
XLOC_022056 hm13 coding downstream 103698 480423 ~ 493384 (-)
XLOC_022062 mitfb coding upstream 73728 711075 ~ 764135 (-)
XLOC_022063 CU927920.1 coding upstream 152146 789493 ~ 790620 (-)
XLOC_022064 rbm10 coding upstream 189901 827248 ~ 900795 (-)
XLOC_022065 rhoac coding upstream 263608 900955 ~ 912817 (-)
XLOC_022066 cdh26.2 coding upstream 297580 934927 ~ 969844 (-)
XLOC_022053 NA non-coding downstream 227085 369131 ~ 369997 (-)
XLOC_022049 NA non-coding downstream 343853 250690 ~ 253229 (-)
XLOC_022068 NA non-coding upstream 381537 1018884 ~ 1034033 (-)
XLOC_022071 NA non-coding upstream 440569 1077916 ~ 1079365 (-)
XLOC_022072 NA non-coding upstream 465848 1103195 ~ 1106137 (-)
XLOC_022073 CABZ01079870.1 non-coding upstream 480958 1118305 ~ 1123971 (-)
XLOC_022074 CABZ01079872.1 non-coding upstream 487167 1124514 ~ 1140060 (-)

Expression


Co-expression Network