XLOC_022088


Basic Information

Item Value
gene id XLOC_022088
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 2245449 ~ 2257461 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044937
AAAAGTTACACTattgagaaactcacacctgagcaatgcatgtgacgtCATTCTccatgagaggcgtctttaagctggcgtcaccaaaaaagccttttatataaagtattaaacacatttcagtacatttttaattgaataaaactgATCCCAAACATTCAAACAGTAATACAAATCTCatcattttaataaagtaaaaacagaCATTACATAAAAACTACATAACACTGTACTAAAACACAGTTCAAAGTCATTTCATACATCCCATTTAAGTACAGCCATGTAAAATGGAATAAAAAGCGTAGAAAATGTTAAATTCATACACCCATATTTATCACTATAGACACAgttcctttaaaaataaataaaaaatctagtaATAGAGCTGCTAAAACACACCGGCAGGCCCAGCAACACTCCCTATTCACAAATCTCTATTgaatatacacatatttaaatgtcaTGTGTTCAGATCTAGTATGCACTGACCAGAGAGGCGATGTAGACCCAAACGGAGAGCACATTACTGGGGTACGGGTGAACATACACGGCCAGGGCGAACTCGACATTTGGGGACTCGACCTTGTGAACCCCTGTGCTGTGAACGGCTTCAATGATCGGACGAAGCTCTGAGAAAGGAAGGTGCAGCGGAAACCCAGATATCTGAAAGAGGACAATGAGAAAAGAGGTCCAACAGTACAGTAGGCATTCATCGCGGCCATCcacctgtcatactgagcagagcaaag
>TCONS_00044938
CAACGATACACTACAGATACAGTGAggaaATCTAGTATGCACTGACCAGAGAGGCGATGTAGACCCAAACGGAGAGCACATTACTGGGGTACGGGTGAACATACACGGCCAGGGCGAACTCGACATTTGGGGACTCGACCTTGTGAACCCCTGTGCTGTGAACGGCTTCAATGATCGGACGAAGCTCTGAGAAAGGAAGGTGCAGCGGAAACCCAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044937 False 749 lncRNA 0.39 2 2245449 2256787
TCONS_00044938 True 216 lncRNA 0.53 2 2256129 2257461

Neighbor

gene id symbol gene type direction distance location
XLOC_022087 NA coding downstream 77272 2163390 ~ 2168177 (-)
XLOC_022086 ndnf coding downstream 146099 2050359 ~ 2099350 (-)
XLOC_022085 prdm5 coding downstream 207790 1926562 ~ 2037659 (-)
XLOC_022084 CU693481.1 coding downstream 584741 1644754 ~ 1660708 (-)
XLOC_022083 fndc7b coding downstream 657494 1586287 ~ 1587955 (-)
XLOC_022089 NA coding upstream 163073 2420534 ~ 2421706 (-)
XLOC_022090 PRSS35 coding upstream 189517 2446978 ~ 2448234 (-)
XLOC_022091 snai1b coding upstream 244720 2502181 ~ 2513300 (-)
XLOC_022092 NA coding upstream 470643 2728104 ~ 2729009 (-)
XLOC_022093 NA coding upstream 584938 2842399 ~ 2844254 (-)
XLOC_022079 NA non-coding downstream 605142 1513309 ~ 1640307 (-)
XLOC_022077 CR376840.1 non-coding downstream 1026948 1218382 ~ 1218501 (-)
XLOC_022076 NA non-coding downstream 1066285 1177395 ~ 1179164 (-)
XLOC_022074 CABZ01079872.1 non-coding downstream 1105389 1124514 ~ 1140060 (-)
XLOC_022095 NA non-coding upstream 702757 2960218 ~ 2992107 (-)
XLOC_022096 AL954726.1 non-coding upstream 798520 3055981 ~ 3056096 (-)

Expression


Co-expression Network