XLOC_022091 (snai1b)


Basic Information

Item Value
gene id XLOC_022091
gene name snai1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 2502181 ~ 2513300 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043649
ATGCCACGCTCATTTCTTGTCAAGAAGTATTTCACCAACAAGAAGCCAAACTACAGTGAACTGGAGAGTCAGACTGACCGGCGATATGCAGTCGTCCCGCAGTGCTTCCCCCTGGATGACCCCCTGGTGCCCAAATATCCCTCCATGCTTGTGTGGAGCTCCAGTGCTCTGCCATTCCCTGGGGTCTCCTCCAGCGTGTCCTGCCCCCCCGCACCCCTGGACCTGAGCTCTCcgtccagcagcagcagcagtggaGAGGAGGATGACTGCCGCACATCTGACCCGCCCAGTCCAGACCCCAGTGACCGCTTCCAGTGCGCGCACTGTGGGAAGAGCTGCAGCAGCCCCGCTGCTTTGTCCCGCCACCAGCTCGCACACTGCAGCCCACAAGACGGCATCAGCGGAGCTACCAGCTCCCTCACCAGCTCCAGGGCCGCCTTCCACTGCAAACACTGTCCCAAAGAGTACAACAGCCTGGGTGCGCTGAAGATGCACATCCGCTCGCACACACTGCCCTGCGTCTGCAGCACCTGCGGGAAGGCCTTCTCCAGACCATGGCTGCTGCGGGGACACATCCGCACACACACCGGCGAGCGTCCGTTCTCCTGCCCTCACTGCAACCGTGCATTCGCTGACCGCTCGAACCTGCGGGCTCATCTGCAGACCCACTCCGAGGTGAAGAAGTACCAGTGCGGGTCGTGCTCTCGGACCTTCAGCCGCATGTCTCTCCTGCACAAGCACACACTGTCCGGCTGCTGTCCGGCGCTCTAGTGGACACACACCGCCTCAGTGACTAAATGAACTGTGTTCAACCACAAGGTGCCTTTCTTTATTCCACAAGCCAAAGGAGAGATGTTATTTTTCTACACAGAGATCACCTGTCAGCCATATTTGCAACGTTTAACTCATGCAAGACCAAAGTCCTGTCTATATGAACGGGGGAAATCTTGAAAACTGCTTACTGAACTCTCAAGTAAACACATATTTCAATTCAGCAACACAATCTAAAGTGACCTGCCCTATTAATGTAGTCGCTTTGGACTTAGTCACATTTAAAACACAGAGTTTCTGGTTTGGTCCAGCTAAAGTGTGCATGCAACGATTGGCACAACGCTAATCTCCTTTACGGCTGTTTCACAGGTAACCAGAGGATGCTGTTATTAACCCTTAAGGACTGGAGGATGACTCTAAAGGACAGGATATGGGATGGGATGTGCTGTGATGAGTTTTCTCCTGCCGTAATCAACGCAGACACACAGTAATGGACAAACGACAGGGTGTGCCTTAAAGGGGAAGTGAAGCACTcggtcaagtttacattattttgtacattggattccactttaatgaaaatatagtaaacaaactcgattaacgtaaccatttagcagaaaacAGCACGTTTCATCAAAGATCGTAGACCTAGGGTGCCGCCATCTTGGAATGTCTCTCTGTGTCTGATGTCATGGGGTTGGTTCctttccctcagctgaacagatgcagaagaaaaggactgaacatggaggcTGGATAGCATAATTTATACCAATGTGTGAAGGACGTGGAGCTGCTGGAATGTGTGCGTCAGACACGGCGACATTCAAAGATGGCGGCATTCTAgctctaaaatctatagtaaaacatgcagttttctgctaaatggttacattaatcgaaattgtttactatattttcattaaaaaggaatccaatgtacaaaataatgtaaacttgactgagtgcttcatttcctcTTTAACAAACAAACTTTAACAACAATCTGTACAAACCCCTCCCCCACAGAACCACGTGACTATACAGACTTGGCTATTTTGACTGGAAGGCGGGACTTTCTTCGCTATGGCAGCCATTCTGAGCGTTGcactttttcccattcaaaacaaTGCAACTAAACTGTGTCTATCAATAGTTTAGGTTTTACCTTGCATGCCTTGACATGGTGTCCAACCCAGTCTGCAGGTTTGAAGGGTCTAGCCTGGCTCTGATGGATTCTTAGGATGCACCTCGGTGCCGGCTGGTCCGGGCCTGTAAGGCACAGCTgctgtaaagtgtgtgtgtgtatggtgaaGACTCGTCTCTCAGCAAGATCTGTGGGGATGTATTGAGACAGCTGTTGCAGCGACACATGCACTGGCTCTCGGCGTCCGCTTATCTCCTGAAAGGCACACCAAAGACCTGTTTTAATAAGAAGCTCAATTAGGCTGAGGAATTCTCTCTGTAATTCGATCTTTGAGGTATTGTGGCCATTGGCTTCTCTTAAATGCACAGTCTGACTCGGCGGCTCTGTGTTTTATTCTCTTCTTAAAGGTGTCAAAAAGAGAGCCGTTTGGGATTTGGAGGAGGGTTATGTACAAAATCTCttgcttaaaggggtagtttacccaaaaataaaaaaaatgactcattatttactcgccctcgagTGGCTCCAAGTtggttttctttcttctgttgaacacaaaagaagatattttgaagaatgttggaaatctgtaacctgTAAATCTTGATGTCTATAGTactatactgtaaaacccaacagccaACTTTATCTAAGTAAATGagtttagttaacttaaaattgactgtaagttaattctactcatttgaaaagagttttgaactcagtgttgaaggtaatgagttaattaaatacctcattacttaaatggagtaagcttacagtactcatatagattagtttaactctatctgtttgaggaaactgattgctacaaactattGGAGTTGCCTTAACCTACTGGGTTTTACAGAGTTCTtttcatttatcgggttttactgtgctcaaactgcttcgtttactcaaatggaataagttcacagtactcattaggataaggttttaaacttaaatggtttgttgcaattggtttcctcaaatggcttgagttaccttaactttttgggttttacagagcACTATTGAAGTCGATGGCTGTTTTTACCCCGTCATTATACAgcatatcttgttttgtgttcaacagaggataGAAAGAAgcgttttttttgtgttttttttttattatttttttcagggttttcacctttattggataGGAAAAGGAAAGTAGAGagaaggcgacgcagtggtgcagtgggtagcacgttcgcctcacagcaagaaggtcgctggttcggttggcgtttctgtgtggagtttgcatgttctccctgcgtttgcgtgggtttcctccgggtactccagtttaccccacagtacaaacacatgcggtacaggtgaattgggtaggctaaattgtccgtagtgtatgagtgtgtgagttgatgtgtgtgtggatgtttcccagagatgggttgcggctggaagggcatccgctgcgtaaaaaacttgctggataagttgacggttcattctgctgtggcgaccccggattaataaagggactaagccgacaagaaaatgaatgaatgaatgaatgaaagtagaGAGAACCgacaggaaagtatggggagcagagagagaggggaaggatcggcaatgGACCACGAggcggaatcgaactcgggtcgccgtgagcaccggagtgcatgtgttgaCGCCCCAACCACCACACCACTGACGCCGACAGAAACAAGCGGTTTTTGAACAAGCGGAGGAtgcataaatgatgacagaattttcatttttttggggtgaactgtccctttaaggtctTCCATAAAGTCTGTATCATCTGCTGCGCTGTGGACATATTTTTTCCAAAGCCACAGTGCTTTATATGAAACGTTTGTCTTCATGTTGGTTATATGTTGGACCTTTGAGGCAAACCAAATGCTATGCAATCTTTTTTTGACCATTGACAATGTTTTCGTGTATTTCTACTTGTATTTCTACAGTTTTTTTGTCCAATAaagtaatttatgttttttgttcAAGACGAAAGGGActgatttgtgttttttattaatttttattagaaTGGAAAGGGG

Function

symbol description
snai1b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including ameboidal-type cell migration; cardiac muscle progenitor cell migration to the midline involved in heart field formation; and posterior lateral line neuromast primordium migration. Is expressed in several structures, including ectoderm; heart; mesoderm; neural crest; and trunk. Orthologous to human SNAI1 (snail family transcriptional repressor 1).

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0022408 negative regulation of cell-cell adhesion biological_process
GO:0007507 heart development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060975 cardioblast migration to the midline involved in heart field formation biological_process
GO:0003261 cardiac muscle progenitor cell migration to the midline involved in heart field formation biological_process
GO:0048920 posterior lateral line neuromast primordium migration biological_process
GO:0008078 mesodermal cell migration biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-980526-514 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including ameboidal-type cell migration; cardiac muscle progenitor cell migration to the midline involved in heart field formation; and posterior lateral line neuromast primordium migration. Is expressed in several structures, including ectoderm; heart; mesoderm; neural crest; and trunk. Orthologous to human SNAI1 (snail family transcriptional repressor 1).

Ensembl:

ensembl_id ENSDARG00000046019

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043649 True 3993 mRNA 0.45 3 2502181 2513300

Neighbor

gene id symbol gene type direction distance location
XLOC_022090 PRSS35 coding downstream 53947 2446978 ~ 2448234 (-)
XLOC_022089 NA coding downstream 80475 2420534 ~ 2421706 (-)
XLOC_022088 NA coding downstream 244720 2245449 ~ 2257461 (-)
XLOC_022087 NA coding downstream 334004 2163390 ~ 2168177 (-)
XLOC_022086 ndnf coding downstream 402831 2050359 ~ 2099350 (-)
XLOC_022092 NA coding upstream 214804 2728104 ~ 2729009 (-)
XLOC_022093 NA coding upstream 329099 2842399 ~ 2844254 (-)
XLOC_022094 zhx3 coding upstream 359555 2872855 ~ 2901167 (-)
XLOC_022095 NA coding upstream 446918 2960218 ~ 2992107 (-)
XLOC_022096 AL954726.1 coding upstream 542681 3055981 ~ 3056096 (-)
XLOC_022079 NA non-coding downstream 861874 1513309 ~ 1640307 (-)
XLOC_022077 CR376840.1 non-coding downstream 1283680 1218382 ~ 1218501 (-)
XLOC_022098 NA non-coding upstream 937698 3450998 ~ 3451379 (-)

Expression


Co-expression Network