XLOC_022138 (trim35-39)


Basic Information

Item Value
gene id XLOC_022138
gene name trim35-39
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 6872473 ~ 6879731 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043735
CAACAAGATTTTTTTCTGAATAGAATTTGTGGAGTTCCCTCATATAGTCATTGAAACCATCTTTTTAAAAGCGTAACGTGAATACTGCCGAAGCACTCGAACAGCTAATATGGATTCACTCTCTGTAAAGGAAATTTCTTGTCCAATATGCTGTGAAATCTTCAAGTCGCCAATTCTTCTGTCATGCAGTCACAGTTTCTGCAAAGAGTGTATTCAACAGTTCTGGAGAACCAAGATTTCTCGGGAATGTCCCGTGTGCAGGAGAAGATCCTCAAAAGACGATCCTCCGAGTAATCTCGTGTTAAAAAACCTGTGCGAGTTGTTCGAGAGGGGCAGAAGTCATGAGAGCTGTTCTTCATCCGGGACCGAGGAATTCTGCGGTTTACATAATGAGAGACTCAAACTCTTCTGTCTGGAGGATAAACAGCCTGCGTGTTTAGTGTGCAGAGATTCAGAGAAGCACGTCAGGCACACATTCAGACCCATCTGTGAAGTCATTTCATCATGTAAGgtgGAGTTGGGCTTTTTACAAGAGAAGCTTAAACACAGAAAGAAGATTAAAGTACAATGTGAAAAAACACTTCAACACATCAAGTCTCAGGCCGAGCACACAGAGTGCCAGATTAAATTAAAGTTCGAGAAGCTTCATCAGTTTCTCCGAGATGAAGAGGAAATTGCAATGACTTCACTGAGAGAAGAAAAGGAGCAGAAGAACCAGAGGATGAAGGAGAAGCTTGAGGAGATAAACGAACACATCTCAGCTCTTTCACACACTATCAGAGACATGGAGGAGATGATGAATGCCAATGAAGTCTTGTTTCTAAAGAATTTTTCAGTCACAATGGAAAGGGTTCAGAGTTCACTGTCTGATCCACAAATGACTCCTGGATCTTTGATTCATGTGGCGCGACACTTGGGCAACCTGCCATTCAGAGTCTGGAAGAAGATGCAAGACATTGTTCACAACACTCCTGTGAtcctggatccaaacacagctcATCCAGATCTCCTCTTGTCTGATGATCTGACCAGTCTGAGATGCAGCACTGAAAGTGGAGATCTTCCCGATAATCCAGAGAGGTTTGATGAGCATTCGTGTGTTCTGGGCTCTGAGGGCTTTAACTCAGGAACACACTGCTGGGATGTGGAGGTGAAGGAGAGCTCGTCCTGGGGTCTGGGAGTGACTACTGCCTCAAACCAGAGAAAGGGTTGTGATTTCTTTGACTCGGGTGTGTGGAGTGTGCAGTACAGACTGTTTGAAGAGTCTGGTTTTCCAGTTGGGCAGAAGCTGGAGCGGGTGAGGGTACAGCTGGACTATGACAAAGGAAGGGTGTCATTCTCTGACCCTGTAactaacacacatatacacacattcacaaccaCCTTCACCGAGACAGTCTTTCCATTCTTATACAGCTTTACTTATCTCTGGATCTTACCCAATTCcttgtaaaaaataatacctaTGAACAGTAGTGTGTTTACTGTAGATCCTGCCATAAACCGCTGTTCATAATTACCTattatgctttgcatgtatgcatTAATAGGATGCTCCAAACTTGATTCGTATATAGTCACGCTTGGACAGCTTTGAattgatagttttaatctattctTCTTGCTTTTAacgtctttgaactaatactgctgtTGACCAGCACCACATTCTGGAGTATCACTATCTCTAaagtcagggccggagtgggactcaatttaagccctggagtttcaagacagaccggcccacctcagttcacgactgattccaattcagtttctaatgacactatcacgtctttttcaagaaaacagctgctttagaaattcaactgtccaacagccctaacagtattatatcttaaagggccatgaaaccccctcgtttcagcagggtgttttcacacctctactttcgaaaaagtcagaaaagtgggcgtgtccagctctgtttaggggggagtgtcggaggaactaaagtgggatggtgtgggagtgtctatttgtgcacgcgcgagtttcagagtcaaaatacacacccacacagacaggagaaagcgatggtgtttaacctacatggacatctgtagtcgaattatttgctgaattaataaatgttggactttaa

Function

symbol description
trim35-39 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be active in cytoplasm.

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080219-13 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDARG00000071241

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043735 True 2128 mRNA 0.43 6 6872473 6879731

Neighbor

gene id symbol gene type direction distance location
XLOC_022137 ftr58 coding downstream 6511 6856469 ~ 6865962 (-)
XLOC_022136 ftr59 coding downstream 20177 6845635 ~ 6852296 (-)
XLOC_022135 FP102169.1 coding downstream 106820 6754910 ~ 6765653 (-)
XLOC_022134 ptges3b coding downstream 122653 6736116 ~ 6749820 (-)
XLOC_022133 baz2a coding downstream 150372 6673446 ~ 6722101 (-)
XLOC_022139 si:ch211-117c9.2 coding upstream 2679 6882410 ~ 6920107 (-)
XLOC_022140 edem2 coding upstream 69210 6948941 ~ 6982986 (-)
XLOC_022141 NA coding upstream 104941 6984672 ~ 6997683 (-)
XLOC_022142 prpf6 coding upstream 118902 6998633 ~ 7052412 (-)
XLOC_022143 slco4a1 coding upstream 187465 7067196 ~ 7125494 (-)
XLOC_022129 BX323087.2 non-coding downstream 452623 6399839 ~ 6419850 (-)
XLOC_022128 NA non-coding downstream 518294 6328231 ~ 6354179 (-)
XLOC_022127 NA non-coding downstream 547559 6313582 ~ 6324914 (-)
XLOC_022121 dre-let-7e non-coding downstream 1440956 5431418 ~ 5431517 (-)
XLOC_022120 dre-let-7a-5 non-coding downstream 1441154 5431196 ~ 5431319 (-)
XLOC_022144 NA non-coding upstream 291135 7170866 ~ 7217574 (-)
XLOC_022145 NA non-coding upstream 320512 7200243 ~ 7202861 (-)
XLOC_022146 mir1-1 non-coding upstream 330426 7210157 ~ 7210262 (-)
XLOC_022147 NA non-coding upstream 429832 7309563 ~ 7323879 (-)

Expression


Co-expression Network