XLOC_022170 (krt5)


Basic Information

Item Value
gene id XLOC_022170
gene name krt5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 10173196 ~ 10177458 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043784
ACTCAGAGGGATTTTACTTTCCTCTTAGTGAGCTCTCCTGCTCCAGATCTCTGTCTCATCCTGCTCTTTTTCTGATCCTCACCCCCTCGTAGACGACAGAAGCCATGTCTACTTCCTTCAAAACCTTCACCAGTAGTGGAAGCATGAGCGGCGGCATGGGCGGTGGCATGGGTGGCGGAATTAGGAAGAATTTTTCTAGCATGTCAACCAGCGCAGTGCCAATGGGCAGCAGGAGCTCAGTGTCCTTCCGTCGCTCTGGTGGTGGTGGCGGCGGCGGCGGTTTTGGAGCAGGATCTGGAGGAAGCTTCAGCTACAGCATGGGTGGCGGTGGCGGTGGCGGTGGCAGTGGCTTTGGAGGAGGATTCGGCAGTGGTGGAGGATTCGGCAGTGGTGGAGGATTCGGCGGTGGAGCAGGATTTGGTGGTGGATCAGCGTACGGGGGTGGAGCAGGATTTGGTGGAGGGTTTGGACCAGGCGGTGTGGTACCCATCACAGCTGTCACAGTCAACCAGAACCTTCTAGCCCCACTGAACCTAGAGATCGACCCCAACATCCAAGTTGTCCGCACCCAGGAGAAAGAGCAGATCAAGACCCTCAACAACCGCTTTGCTTCCTTCATTGACAAGGTGCGCTTCCTGGAACAGCAGAACAAAGTACTCGAGACAAAATGGAGTTTATTGCAAGAACAGACCACTACCCGATCCAACATCGATGCCATGTTCGAGGCCTACATCGCCAACCTGCGCAGACAGCTTGACGGACTTGGCAATGAGAAGATGAAGCTAGAAGGAGAGCTGAAGAACATGCAGAACTTGGTGGAGGACTTCAAGAACAAATATGAAGATGAAATCAACAAGCGTGCCGCAGTGGAAAATGAATTTGTCCTGCTGAAGAAGGATGTCGATGCTGCCTACATGAACAAGGTTGAGCTTGAGGCCAAGGTTGACTCCCTTCAAGATGAAATCAACTTCCTTAGGGCCATCTTTGAGGAGGAGCTGCGTGAACTCCAGTCACAGATCAAAGACACATCAGTCGTTGTGGAAATGGACAACAGCCGCAACCTGGACATGGATGCTATTGTTGCTGAAGTCCGCGCTCAGTATGAAGACATCGCCAACCGCAGCCGTGCTGAGGCCGAGTCCTGGTACAAACAGAAGTTTGAGGAGATGCAGTCCTCTGCTGGCAAATACGGAGATGACCTTCGTAACACCAAGGCTGAGATTGCTGATCTCAACCGCATGATCAGCAGACTTCAAAATGAAATCGAAGCTGTCAAGGGACAACGTGCCAACCTGGAAGCTCAGATCGCAGAGGCTGAAGAGCGCGGAGAGCTGGCAGTGAAGGATGCCAAGCTCCGCATTAAGGATCTGGAGGACGCCCTGCAAAGAGCAAAGCAGGATATGGCGCGCCAGGTGCGTGAGTACCAGGAGCTCATGAACGTCAAACTGGCCTTGGACATTGAAATCGCCACCTACAGGAAGCTTCTGGAAGGAGAGGAATCCAGAATTGCATCTGGTGGCAATACTGCAACTATCCACATCCAGGAATCAAGCAGCAGCAgcgGTGGCGGCGGCGGTGGATTTGGATACGGTGGTGGCAGTGGATACGGTGGTGGCAGTGGATTCGGTGGTGGCAGTGGATACGGTGGTGGCAGTGGTTTCGGAGGTGGCAGTGGATTTGGATATGGTGGTGGCTCAGGGATGTCGATTGGTGGCGGCTCTGGCATGAGCATGAGTGGCGGCGGTGGCGGTCAAATCTCAATGTCCCGTTCTTCTATTGTGTCTAGTCAGAAGCGCCGCTTCTAAACCAAACACGTCCACCCAGATCCCTCCTTCCAAAATATCAGCTACCACCTGGGCAACTCTTTTTCACTTTTTCACTCCACATTTCAATGTTTTCGTttctttttaaagtgtttaacGCCCCCCCCAAAATGCCATGACCTAAAAAGACAAAGTGTTAAAAACCTGCAGAATGGCTTTTTACATTCACTGTGCTGTCTTTGATTCTTGTATCTTCTTGGCATTGCTTCTCCAACAGAATAAAACTGTCCTTTAGGGGATGCTAAATGGGAAAAGAGCTAATGAGACAGACAAAGCATGGAGCTCAAGTATTATTTCAAAGTGAATAGCTTTTGTTGCTCTGTGTCACAACATGCAAGTATTAAAGTGTACACAGAATTGTGTTTAAATTAATTCTGCAGCAGTACAACGGCAACTTTTAATGTTTACTCATAGAGCAACAAAAGTTACCTTTTGAGATTATACTGTCATCAGAAAGGAGTAAATGTCTGGCAAATGTCAGTTACACCAATTTTTACTCTACCTGATTTTGGATGGGCTGATGAGCTGTTCTGTACAACATGGAAACATCAATAAATCAGGGTTATATACAATC
>TCONS_00043785
CTTTCCTCTTAGTGAGCTCTCCTGCTCCAGATCTCTGTCTCATCCTGCTCTTTTTCTGATCCTCACCCCCTCGTAGACGACAGAAGCCATGTCTACTTCCTTCAAAACCTTCACCAGTAGTGGAAGCATGAGCGGCGGCATGGGCGGTGGCATGGGTGGCGGAATTAGGAAGAATTTTTCTAGCATGTCAACCAGCGCAGTGCCAATGGGCAGCAGGAGCTCAGTGTCCTTCCGTCGCTCTGGTGGTGGTGGCGGCGGCGGCGGTTTTGGAGCAGGATCTGGAGGAAGCTTCAGCTACAGCATGGGTGGCGGTGGCGGTGGCGGTGGCAGTGGCTTTGGAGGAGGATTCGGCAGTGGTGGAGGATTCGGCAGTGGTGGAGGATTCGGCGGTGGAGCAGGATTTGGTGGTGGATCAGCGTACGGGGGTGGAGCAGGATTTGGTGGAGGGTTTGGACCAGGCGGTGTGGTACCCATCACAGCTGTCACAGTCAACCAGAACCTTCTAGCCCCACTGAACCTAGAGATCGACCCCAACATCCAAGTTGTCCGCACCCAGGAGAAAGAGCAGATCAAGACCCTCAACAACCGCTTTGCTTCCTTCATTGACAAGGAAGCTTCTGGAAGGAGAGGAATCCAGAATTGCATCTGGTGGCAATACTGCAACTATCCACATCCAGGAATCAAGCAGCAGCA
>TCONS_00043786
AGCCAACCAGGCATGACACATAAGCTAATCAATTTTATTGAGACATCCATCATAGGTGTGTCATCTTGAGAGGTGCGCTTCCTGGAACAGCAGAACAAAGTACTCGAGACAAAATGGAGTTTATTGCAAGAACAGACCACTACCCGATCCAACATCGATGCCATGTTCGAGGCCTACATCGCCAACCTGCGCAGACAGCTTGACGGACTTGGCAATGAGAAGATGAAGCTAGAAGGAGAGCTGAAGAACATGCAGAACTTGGTGGAGGACTTCAAGAACAAATATGAAGATGAAATCAACAAGCGTGCCGCAGTGGAAAATGAATTTGTCCTGCTGAAGAAGGATGTCGATGCTGCCTACATGAACAAGGTTGAGCTTGAGGCCAAGGTTGACTCCCTTCAAGATGAAATCAACTTCCTTAGGGCCATCTTTGAGGAGGAGCTGCGTGAACTCCAGTCACAGATCAAAGACACATCAGTCGTTGTGGAAATGGACAACAGCCGCAACCTGGACATGGATGCTATTGTTGCTGAAGTCCGCGCTCAGTATGAAGACATCGCCAACCGCAGCCGTGCTGAGGCCGAGTCCTGGTACAAACAGAAGTTTGAGGAGATGCAGTCCTCTGCTGGCAAATACGGAGATGACCTTCGTAACACCAAGGCTGAGATTGCTGATCTCAACCGCATGATCAGCAGACTTCAAAATGAAATCGAAGCTGTCAAGGGACAACGTGCCAACCTGGAAGCTCAGATCGCAGAGGCTGAAGAGCGCGGAGAGCTGGCAGTGAAGGATGCCAAGCTCCGCATTAAGGATCTGGAGGACGCCCTGCAAAGAGCAAAGC

Function

symbol description
krt5 Acts upstream of or within fin regeneration. Predicted to be located in keratin filament. Is expressed in several structures, including EVL; epidermal cell; eye; integument; and periderm. Human ortholog(s) of this gene implicated in several diseases, including Dowling-Degos disease; Meesmann corneal dystrophy 2; epidermolysis bullosa simplex (multiple); ichthyosis (multiple); and palmoplantar keratosis (multiple). Orthologous to several human genes including KRT5 (keratin 5).

GO:

id name namespace
GO:0031101 fin regeneration biological_process
GO:0045095 keratin filament cellular_component
GO:0005882 intermediate filament cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-991110-23 Acts upstream of or within fin regeneration. Predicted to be located in keratin filament. Is expressed in several structures, including EVL; epidermal cell; eye; integument; and periderm. Human ortholog(s) of this gene implicated in several diseases, including Dowling-Degos disease; Meesmann corneal dystrophy 2; epidermolysis bullosa simplex (multiple); ichthyosis (multiple); and palmoplantar keratosis (multiple). Orthologous to several human genes including KRT5 (keratin 5).

Ensembl:

ensembl_id ENSDARG00000058371

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043784 False 2397 mRNA 0.50 9 10173196 10177458
TCONS_00043785 False 693 mRNA 0.56 3 10174139 10177442
TCONS_00043786 True 841 mRNA 0.49 7 10174394 10175898

Neighbor

gene id symbol gene type direction distance location
XLOC_022169 plxnb1a coding downstream 35874 9938236 ~ 10137322 (-)
XLOC_022168 si:ch211-220i18.4 coding downstream 247628 9908940 ~ 9925568 (-)
XLOC_022166 prkcbp1l coding downstream 309030 9809540 ~ 9864166 (-)
XLOC_022167 BX324190.1 coding downstream 320186 9852896 ~ 9853010 (-)
XLOC_022165 mapre1b coding downstream 365618 9794730 ~ 9807578 (-)
XLOC_022171 krt8 coding upstream 72168 10249626 ~ 10254288 (-)
XLOC_022172 NA coding upstream 114710 10292168 ~ 10394444 (-)
XLOC_022173 NA coding upstream 447899 10625357 ~ 10628072 (-)
XLOC_022174 NA coding upstream 450694 10628152 ~ 10631424 (-)
XLOC_022175 foxp1a coding upstream 457379 10634837 ~ 10723009 (-)
XLOC_022162 dre-mir-2193 non-coding downstream 818265 9354822 ~ 9354931 (-)
XLOC_022161 CU137717.2 non-coding downstream 856502 9316578 ~ 9316694 (-)
XLOC_022160 NA non-coding downstream 1336858 8835967 ~ 8836338 (-)
XLOC_022159 NA non-coding downstream 1372441 8799037 ~ 8800755 (-)
XLOC_022179 NA non-coding upstream 817331 10994789 ~ 10997256 (-)
XLOC_022181 NA non-coding upstream 1165146 11342604 ~ 11345773 (-)

Expression


Co-expression Network