XLOC_022173


Basic Information

Item Value
gene id XLOC_022173
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 10625357 ~ 10628072 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044962
TTAAATTAGTAACTGCAAATGCTGATCCCAtttgatttcaatttattttcccTAATACTGAGCTAATTAGTTCAATGTAATGGGGTTcatcaatatacagtatttttcaaggaatttaagacttttaaggcactcaactctatttattcatttaaattttaggtgtaaattcatttgtttcattttaaaattgttacttAAAGCAGGCGTTTTACACTTTAACCTCTGGAATAAAAGTGCCTGAAAGTTTCCGCTAAATAATCCAATTCGGTAGGTGGCGCAGTTACAAATTGGGTCCTAGAAATGCAGTTTCACTGTCATCCAATCCGGTGGGTGGCGCTTCCGCAAAACACTAGggtcctaaaaatgcggtcctAAACATGTGGTCCTGAGAGTGCAGCTACTCCAGTTGTGCAGGATCATACTATTGTGCATGGTTTTCCCAGTAAAGGGTTGTGGCAGCAAGAGCTGTAAAACAGAGTAATCGGCGGCTTATTCCATCGATAAAGCAGAGAATAAGGTAAgataacttttttatattttttatataccaTTATATACAAGTTATaacttttttataactttttttttgtatataccaAAGATAACTGTTTGGTAAACCTGTCAGCTAAAATAAAGAAGGGAAAAAAGATTTTctgtaatttgttaattaaaatgaaagaaaaggcGATGAATTTGTGAAAGGAAATAaaaaactcactcactcactctccttTAGATTCTCTGTTttatcagtggaatgaaccgtcgaTTACTCTTTTAGGCCTATATTTTTTTACTAGTGCAAGCTCTCCCTgccacaacccagtgctgggTAAAACCATACTCTActtctcatttacacacaaacacacacgcagagagagagagagggagagagagagagagagcaggcaaCGGACATATGCTTTTGCCCACCCTCGAGGACTACGGGTGACAGGATAAAAACACGGATGAAACTTATAGAAGGTATATTGAAACAGTAATTTTTTAGGTCTCACAAATTCAAGTGACATCAGTAAATCATCTTAAACTGTGACACATGCTGACTGTAATCttatcattttatttgtttttctgttttcgtACAACTATTAGGTTTACGGTTTGTGTTTAAGcagtgtttgttctgcagactgtTTCTTCTTTATTTGAAATAGACATTTTGTCATTTTACAGCATAAATAGATACAGCACAGGCTGGTGTGATAGCCCTGCTTTTCCAATCACAAATATAAACATCTGTAATTGTTAGTAATTTTCTGGGGGAAACGCTCTAACGCTCCTCAGTTTGAACATCTTGACCACAATTACATGCCCAAATCCACTGAGTAGCTGATATTTAGAGGAATGAGCAGTTGAACAGACGAACCGAATAAACTGAGCAGTGAGTGTAAATCTTCTGTAACatcaggaaaaataaaaatactgaccTTCAGCCTTTTTCCTGGCCTTTCTAAATGAATATCTGGTCCCATGTTATATACAGTGGCCTTAAATAATATGTACTTATTGTGTGAATACATGCTTTTACATTGTTCTTATAatccattaaataaatgcatgtagttattatatgatcaattaattTCTGTGGTTACATCTTTAATTACACTGTTGTCCATCCTTTACATCTTAACCTTAAATCTACACATAGCACCATCCCTAACCCTTCCTGagtcccacctcaagagcaccagaagtgttctgcaatacattatgaacacagtaagtgcattgtatttattttatgatgCAAGTACATATAGGCTAAAATCCCCTAATATAAAGAGGGAACGGATATTTTGTGCATTTTCATCAATTACAATGCGCAAACCAATCCTAGTACCAGGGAAAACACTACAgcatttacataatattaatCCTGACCTCCTCTCTGGAAATCTTTATCACTTAATAAATAAGAACAAAGTACAATGATGACCACAGTGCTTTAATTATATGAAATGAGTGTGTTTGAGTCCATAGTGTGACGCAGAGCACATAAAAGCAGAATCAattgaataataagaataagattAATCAGTCGGTATCAATCAAGACACAAACCCTCTTTTGTTATCATGTTGTTTTAATctgttgctttatttttatttgtatattattactttaattaaaatattaataaggtTTTGCTCAAGACTTTACATAATTCAAgggacatttttatatttaaactaaaATTGCATATTTCAATacctaatattaaataaattaatatttaagttttatttcaaGCCAGctagtggtgacagtggcgaggaaaaaataCTTCACCAACTGATGAAGTGAAGAGAAACTTGTCTCTCTTGGGCACGACCATTATTCATGTCCATACGTTCTGTGTGAAGCTGCAGTCTATACACCAGGCGCTGGAGAAGCTGGACGttcatcgtggagaagctgcaggtgagAGTAAGACACCGGCGGGAGGTTAGGCTGGTCCATAGGATCAATGCGGGGACTTGATTGTCACTGTGGTTTTTCAGGAAACAGTCTCATGCACTCCATTTCTCCATGATGACCACAGCATAAGCtcgggatacggcctggtccaggattatggataccttgggatcatcttctcacaggtcttggatcgcatcaatggCACTGCAGAATCTCGGGAATGTGTATCCTCAggtggaaataaaaaataaagaaaatgattaGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044962 True 2716 lncRNA 0.36 1 10625357 10628072

Neighbor

gene id symbol gene type direction distance location
XLOC_022172 NA coding downstream 230913 10292168 ~ 10394444 (-)
XLOC_022171 krt8 coding downstream 371069 10249626 ~ 10254288 (-)
XLOC_022170 krt5 coding downstream 447899 10173196 ~ 10177458 (-)
XLOC_022169 plxnb1a coding downstream 488035 9938236 ~ 10137322 (-)
XLOC_022168 si:ch211-220i18.4 coding downstream 699789 9908940 ~ 9925568 (-)
XLOC_022174 NA coding upstream 80 10628152 ~ 10631424 (-)
XLOC_022175 foxp1a coding upstream 6765 10634837 ~ 10723009 (-)
XLOC_022176 eif4e3 coding upstream 95970 10724042 ~ 10745319 (-)
XLOC_022177 rybpa coding upstream 134612 10762684 ~ 10786400 (-)
XLOC_022178 pdzrn3a coding upstream 200644 10828716 ~ 10914275 (-)
XLOC_022167 BX324190.1 non-coding downstream 772347 9852896 ~ 9853010 (-)
XLOC_022162 dre-mir-2193 non-coding downstream 1270426 9354822 ~ 9354931 (-)
XLOC_022161 CU137717.2 non-coding downstream 1308663 9316578 ~ 9316694 (-)
XLOC_022160 NA non-coding downstream 1789019 8835967 ~ 8836338 (-)
XLOC_022179 NA non-coding upstream 366717 10994789 ~ 10997256 (-)
XLOC_022181 NA non-coding upstream 714532 11342604 ~ 11345773 (-)
XLOC_022182 CR388030.1 non-coding upstream 904268 11532340 ~ 11532470 (-)
XLOC_022183 CR388030.2 non-coding upstream 959345 11587417 ~ 11587532 (-)

Expression


Co-expression Network