XLOC_022176 (eif4e3)


Basic Information

Item Value
gene id XLOC_022176
gene name eif4e3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 10724042 ~ 10745319 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043796
GCCTGACTTCAACCTCCTCTGTCcgtctctgttgttgttgttgtgtcggTGACGCGGCAAGTCCTGCCGGCCGAACGGCAAATCAGTCAGCATCAATAATCTGTCAATTTTTGCATGTGGAGATTAGTATAGATCTCCCAGCAACACACTTGCATATCGATTAGCTTCAATAAAGCAAAAAATGGCGGTTCCTGCAGCCCCAAACCTGCAGCTGAACACGGCGAGACAAAGCAGCCCAGTCAACTCTACGGAAAACGACATCCACATCGACGAGAGAGAGCTGGAAAACATCACCAACCATGTCGAGGATGGCACCTCATTGCCGCTGCACTCGCCCTGGACCTTCTGGCTCGATCGgtCATTACCAGGTACAACGGCAGCAGAGTGTGAATCAAATCTGAAAAAGATATATACTGTCCACACTGTACAGAGTTTTTGGAGTGTGTACAACAACATCCCTCCTGTGTCCTGCCTCCCCCTGAGGTGTAGCTACCACTTAATGCGAGGAGAAAGAAGGCCACTATGGGAGGAGGAAAGCAATGCAAAGGGAGGTGTTTggaaaatgaaagtgccaaagGAGAGCACATTAGCTGTGTGGAAAGAACTGCTGTTGGCTACGATTGGTGAACAGTTCACAGATTATTGTGCATCAGAGGATGAAGTGGTTGGAGTAAGTGTCAGTGTGAGAGAGCGAGAAGATGTGGTTCAGGTCTGGAATGGAAACGCCTCTTTTGCCAATGAGGCAAACGTTTTAGGAAGAATCTACGAACTTCTTCCACAGATATCTTTTAAAGCAGTATTTTATAAACCACACGAGGAGCACCATGCGTTTGAAGGTGGTCGCTCAAGACATTAGCAAGCTTTGCACATTTACCACATCTACCCTGTTTTTGGACTGATCCTAGAAAATGGACTGAAAACGGAAAAAAATAATCCCTCCTGGGCGAACAGAACTCTTGGGTTTTGCAATTGTTTCATATCGTAGAGAATGTTACAGCCCTGTTTTTAAGTTTTAAGCATTGCAAATGATCCCTCCGTGCTTTTTCCTGAGGAGTTTGTTCATACCCGATATTTAGGCAATATTAATGAAATAGCAAGTAGCATATGTAATATAAATCATCACAACAGAGCGATGTTTCCAATTGTTCTAGTTTTTCTCCTCTATTTCTAGGATTACTGATCAAATGTGCAGTATAGTGACGGTTGCTGCTTGTCAAAGTATATGCTCGTTGTGTTAGACACTTTCATTTACTGAATTAGAACGTCCGTTAGGAACAAAATCTTAGGGCTCTTTTTTTCTTAGACGCGCATTAGGCATAACCTTAGACAAAAAGAAGTTCAAGGCTAAGTCTAATCTGTTTCTAGGAACTATCTTTTATGCAAATGTATTGCACATCTTAAGAAAATCTCTTTGGTTTGGAGGTTATCAATAATTTCAGAGCAAATGGAAGTGGGGGGAACGCAATCTTGGTTAGAACCGCGAATACACAGCGAAGTGCATATGCAATTCCTTGTTTTCACCCAaactgaatatttaatttaaacaaaatccCAAGAGTAAAACGGCTTTACTTTCATGCTTTAGAAGACTAGTGCTGGGAAATGATCAATCCGGATTTAATTGCATTCAacttaaaagtttgtttttacgcaatatatatttgtgtgtgcatataaatacaaacacatacaaaatacaacaacaaatcaaaattatttacgtaaatatttgaatttgtatttatttttatcacataAACACGTTTTatgtctaaatataaataaaattgtgattACGTAAAAAACATACAAACGCACACGTTATTTAAATACAAGCCTTTATTTTGCATCCCCTTTAATCAACAATCATTGCCCAGCACTAATCCAGACCTCCTCTTGTAGTATTTTACGTAAATGAAAGCTGTTTTAGAATGGCGTCACAGCACTGTTAAACGTCTTTTGTGTTTTGGTTACTGCGTTGTGAATAATATCCAGCATTCTGTTCAAGGTGTTATTAACTGTAACCCCATGCGTGTCTTGTCTTTGTCAGAGTAGCTTAATATTTTCACCATCgccagaattattattattattttttgtaacttATGCATTTGCTCCTAACTGCCTTTTTATTCGCTGTAATCACACTGTGTCTTGTTTCAGAGTGCTCATCATTGTAGTTTGTTTTGCTGTGCTTGAATGGATGGAAATATGTGTGCGTCGAGGGGAGCTAGTGTAGATATCGTCAAAATAAGAAACTGAAAATGATCTGTGTAATCATCAGAGCatttatatttttagttgttCAGTACCAAAGAGATATCTTTTCTGTTCTCCTGTGTTGTAATTCATCATCGTCTGAGATCTGCACATGGTTAAATTCGCGTTTGTCTCGCTTGCAGCTCACATCTTGATGCTGATTGGATTTTGTTGTGGTTTGTCAAGTTTGAAACTTAAGCCCAAAATGACCTGCATCATGAACCAGGTCCGTAATGCACTAAGAAGCACAATTATGAGTTCGTCCTTGATGTGGGCAGGAATTGTGCAAAATAACTTGTACATGCAGCTGACTTTTCATATTTCAGCCTTTTTCCTACCTGTCACTGAGATGCGAGTACTGAGGTGGATTTCTTTTGTTTGTGAAGCATTCGTGTCAGTTTTTCCAGGCTCCCAATCAGGATCTGAAACCTCACACTGATTGTCAATCTTCTGGAACGGTGCCTTGTGTTCTCCCAGGGTTTCACTCATAGaatgtttaatgtatttaatcagttataatattaattttctttcttttcttttgcttATAGGTTTTGAAATATTGAATAAATACGAAGCAGAATACAAAA
>TCONS_00043797
ttgttgttgttgtgtcggTGACGCGGCAAGTCCTGCCGGCCGAACGGCAAATCAGTCAGCATCAATAATCTGTCAATTTTTGCATGTGGAGATTAGTATAGATCTCCCAGCAACACACTTGCATATCGATTAGCTTCAATAAAGCAAAAAATGGCGGTTCCTGCAGCCCCAAACCTGCAGCTGAACACGGCGAGACAAAGCAGCCCAGTCAACTCTACGGAAAACGACATCCACATCGACGAGAGAGAGCTGGAAAACATCACCAACCATGTCGAGGATGGCACCTCATTGCCGCTGCACTCGCCCTGGACCTTCTGGCTCGATCGgtCATTACCAGGTACAACGGCAGCAGAGTGTGAATCAAATCTGAAAAAGATATATACTGTCCACACTGTACAGAGTTTTTGGAGTGTGTACAACAACATCCCTCCTGTGTCCTGCCTCCCCCTGAGGTGTAGCTACCACTTAATGCGAGGAGAAAGAAGGCCACTATGGGAGGAGGAAAGCAATGCAAAGGGAGGTGTTTggaaaatgaaagtgccaaagGAGAGCACATTAGCTGTGTGGAAAGAACTGCTGTTGGCTACGATTGGTGAACAGTTCACAGATTATTGTGCATCAGAGGATGAAGTGGTTGGAGTAAGTGTCAGTGTGAGAGAGCGAGAAGATGTGGTTCAGGTCTGGAATGGAAACGCCTCTTTTGCCAATGAGGCAAACGTTTTAGGAAGAATCTACGAACTTCTTCCACAGATATCTTTTAAAGCAGTATTTTATAAACGTAAGGGGTTTACATTTTACTCACAGCATGTCACACTCTCTGCTTAAGTGTATATGGTAATGAAATATTAAAGTATATGAAACCCTAA

Function

symbol description
eif4e3 Predicted to enable RNA 7-methylguanosine cap binding activity and translation initiation factor activity. Predicted to act upstream of or within regulation of translation and translational initiation. Predicted to be part of eukaryotic translation initiation factor 4F complex and mRNA cap binding activity complex. Orthologous to human EIF4E3 (eukaryotic translation initiation factor 4E family member 3).

GO:

id name namespace
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0006417 regulation of translation biological_process
GO:0005845 mRNA cap binding complex cellular_component
GO:0016281 eukaryotic translation initiation factor 4F complex cellular_component
GO:0000340 RNA 7-methylguanosine cap binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040912-156 Predicted to enable RNA 7-methylguanosine cap binding activity and translation initiation factor activity. Predicted to act upstream of or within regulation of translation and translational initiation. Predicted to be part of eukaryotic translation initiation factor 4F complex and mRNA cap binding activity complex. Orthologous to human EIF4E3 (eukaryotic translation initiation factor 4E family member 3).

Ensembl:

ensembl_id ENSDARG00000005078

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043796 False 2849 mRNA 0.39 7 10724042 10745319
TCONS_00043797 True 866 mRNA 0.46 6 10727402 10745288

Neighbor

gene id symbol gene type direction distance location
XLOC_022175 foxp1a coding downstream 1033 10634837 ~ 10723009 (-)
XLOC_022174 NA coding downstream 92618 10628152 ~ 10631424 (-)
XLOC_022173 NA coding downstream 95970 10625357 ~ 10628072 (-)
XLOC_022172 NA coding downstream 329598 10292168 ~ 10394444 (-)
XLOC_022171 krt8 coding downstream 469754 10249626 ~ 10254288 (-)
XLOC_022177 rybpa coding upstream 17365 10762684 ~ 10786400 (-)
XLOC_022178 pdzrn3a coding upstream 83397 10828716 ~ 10914275 (-)
XLOC_022179 NA coding upstream 249470 10994789 ~ 10997256 (-)
XLOC_022180 cntn3a.2 coding upstream 269374 11014693 ~ 11130683 (-)
XLOC_022181 NA coding upstream 597285 11342604 ~ 11345773 (-)
XLOC_022167 BX324190.1 non-coding downstream 871032 9852896 ~ 9853010 (-)
XLOC_022162 dre-mir-2193 non-coding downstream 1369111 9354822 ~ 9354931 (-)
XLOC_022182 CR388030.1 non-coding upstream 787021 11532340 ~ 11532470 (-)
XLOC_022183 CR388030.2 non-coding upstream 842098 11587417 ~ 11587532 (-)
XLOC_022185 NA non-coding upstream 1271384 12016703 ~ 12020611 (-)

Expression


Co-expression Network