XLOC_022179


Basic Information

Item Value
gene id XLOC_022179
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 10994789 ~ 10997256 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044964
caaagggggggctaataattctgactttaactgtatataagcaatatcacatcaaaggagtagcagtgcaatatggctgtatatcgacactggtgggagACGTATGTTGGCTCAAGGTCagaggccgagtgccttagtgtcccaccagtgacgatattgATATTGCGTTAATACAACATTTTGAGGGCCtaattttgtatataaaaaagaaaatcaaacacgaagaGTCTCAAAATACCTTTTATTAGAGGAATTACctttttccaccattcattcacatttgcagctgatatcagaacagcagaaaccgttgatAATTCatcgtcactttagagctagtatttgaatgattttctagcatacggtctaaagtgatgacaaaacaggtgatttttctgacattttaagattatagggctgaacggcatgaaatttCATCAGTCTACTGAGAttccccagtatttctctgttgcaattgggtgATCACAATAataaaccctgaaaaagccaaaaagaagcaaacactagcagataatggtataaatacagcactacaaacatacaaaagagagagatcgacttagaatgttacttacctgttttataatgatttgtaatGTGAAATTTGGGATGAGTTTTTCTCCACTAAGGACTCATTATGCAGTcactgtcaccatcttgtggcacaaccgtctttgctctgttcagtatgacaggctaatgaCCGAAAACACGTTGAatctcataatatttttattattttaaataggcactatgcttataaataaactgcatagttgtaatctaaacaactacattctcacctaaaaagcctcaaaagtacattatgttgcccaacagctgcaatattagtcaaactgtagtgagtttattgatctgctgtcactctatgtgggtggagtaagaCACAAGGATGAAGAGGatgtacgagttctgatattgcagaatatcgcacagctataaGCTACCGTGACtgtccaatcagaatcaagtgttCCAGACAGCCATGTTAAAATCATCAATAATCTGATCCTGTGTTTACGATTTATGCAAAACAGAACAACAGTCATTGGTACTGTCTTCTAGCCTTTATCTGCCTAGAAACTGCAGCAAAATGTGTCTATAAGTACTATTATTCTGAAACATAAACAATATGTTTTACTTTCAATGAGCAtggtttgttgctgtttttttttttttttggtggtagttttgtaaaaaatattggtAGAGGAACATTTTTTTCACTGAGCCTGGGTATGAAAACTGAAAGCACAGAATTTGACGGATCTTTATCGTAATGTAGAAGCCATTAAACCATACTAATAAATTACAGCGCACCCTGCGGCGGCCTTTGACCAAATCTGCAAGGGAATAATGGTTATAAGGACAGCCGAGACAAGATGGATATGAGACGAACAGCATCTGAGCTGTGTCAGGACGACTGACAAGCAGCGATTttgctttcctttttttgttatttcaccTCACAAAAGGGACGCGGCCACCTTTCTGTGTCGTTTTAGGATGACCGCACTCAAAGGGCCTCACTTACGCACATTTGAGGGGACTCTAGGGCGCAGTTTTATTTTCACTCGGCCTTGGTTTTGAATTGTAAGGTCAAACATGAAAAAGTTGAAGTGGGTGTAAATGAAAAACGCTCTCTGAGTGAGAAAAGTCGCGTTGTCCCTACAGACTTGCCGTACAATATAGATGTCACATCAAACTCTGTTGAAGCTCTAGGATGTTTTTGTGTCCGGGATGAAGGCTGCTGCATGATTTTGATTTAACCTTTGAAATGGCTGCTGACATTTAGGTGCCTGTTGGGACTTGTGTATTTTGTTCTGGATTGTCAGCCCATTTTTGTGGATATTATTCATGTTTTCTCTGGAGTTGCTTCATCGGAGATCCTTAAGTGctttttatatatgaaaaaaaaaacaaacaaaaaaatcattggTTTATGTGGTTGCTTcagaaaaggtaaaaaaaaagtgttttgtattTTCCAAGTATTGTTTTGTTCTTTCGGTTTTATGACATCAAACTTGTAATGGACTTTTTTTGTTAAAGGTCAAGTGCTGTCCTTTAAAGTAAAGCAATTTGATTACGGCTCTCAGAGACTGATTTTTGGAAGGATTATGTAATGGAATGCGAGATGatattttgttccttttttgATTGAAAAGACAACAAAATCAAGATTAACTTGTGTTTTCGTGCGTTAGTTTTAAATAGATTCACCTTCCATACTTGTAACAACACTTGACCTGAGGTTTTTGATAGTTCTGTATTAATATGTTGTATATTGAATACATCTCTATGAGATGATGTACTCGAGCTGAATACAGTTTTCATATTGAAAAGAATCGGATTGTGTATAGTAAAGCTGTGCATGTTGATTGTTTAATGTGTGTACATTTTCTaaagcaaatttaataaaaacc

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0006887 exocytosis biological_process
GO:0099643 signal release from synapse biological_process
GO:0050877 nervous system process biological_process
GO:0006906 vesicle fusion biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0065008 regulation of biological quality biological_process
GO:0043010 camera-type eye development biological_process
GO:0051179 localization biological_process
GO:0007267 cell-cell signaling biological_process
GO:0030182 neuron differentiation biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0032940 secretion by cell biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0046903 secretion biological_process
GO:0051234 establishment of localization biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0017157 regulation of exocytosis biological_process
GO:0048880 sensory system development biological_process
GO:0007626 locomotory behavior biological_process
GO:1903530 regulation of secretion by cell biological_process
GO:0023061 signal release biological_process
GO:0061024 membrane organization biological_process
GO:0061025 membrane fusion biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0015696 ammonium transport biological_process
GO:0051046 regulation of secretion biological_process
GO:0048666 neuron development biological_process
GO:0090174 organelle membrane fusion biological_process
GO:0007399 nervous system development biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0006810 transport biological_process
GO:0050803 regulation of synapse structure or activity biological_process
GO:0001654 eye development biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0007423 sensory organ development biological_process
GO:0048699 generation of neurons biological_process
GO:0051641 cellular localization biological_process
GO:0051649 establishment of localization in cell biological_process
GO:0016050 vesicle organization biological_process
GO:0045055 regulated exocytosis biological_process
GO:0150063 visual system development biological_process
GO:0097060 synaptic membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0042995 cell projection cellular_component
GO:0042734 presynaptic membrane cellular_component
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0071944 cell periphery cellular_component
GO:0097708 intracellular vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0031982 vesicle cellular_component
GO:0098793 presynapse cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0017075 syntaxin-1 binding molecular_function
GO:0000149 SNARE binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044964 True 2468 lncRNA 0.37 1 10994789 10997256

Neighbor

gene id symbol gene type direction distance location
XLOC_022178 pdzrn3a coding downstream 80514 10828716 ~ 10914275 (-)
XLOC_022177 rybpa coding downstream 208389 10762684 ~ 10786400 (-)
XLOC_022176 eif4e3 coding downstream 249470 10724042 ~ 10745319 (-)
XLOC_022175 foxp1a coding downstream 271780 10634837 ~ 10723009 (-)
XLOC_022174 NA coding downstream 363365 10628152 ~ 10631424 (-)
XLOC_022180 cntn3a.2 coding upstream 17437 11014693 ~ 11130683 (-)
XLOC_022181 NA coding upstream 345348 11342604 ~ 11345773 (-)
XLOC_022182 CR388030.1 coding upstream 535084 11532340 ~ 11532470 (-)
XLOC_022183 CR388030.2 coding upstream 590161 11587417 ~ 11587532 (-)
XLOC_022184 si:dkey-178k16.1 coding upstream 866967 11864223 ~ 12015139 (-)
XLOC_022173 NA non-coding downstream 366717 10625357 ~ 10628072 (-)
XLOC_022172 NA non-coding downstream 600345 10292168 ~ 10394444 (-)
XLOC_022167 BX324190.1 non-coding downstream 1141779 9852896 ~ 9853010 (-)
XLOC_022162 dre-mir-2193 non-coding downstream 1639858 9354822 ~ 9354931 (-)
XLOC_022185 NA non-coding upstream 1019447 12016703 ~ 12020611 (-)
XLOC_022187 AL929345.1 non-coding upstream 1070864 12068120 ~ 12068234 (-)

Expression


Co-expression Network