XLOC_022181


Basic Information

Item Value
gene id XLOC_022181
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 11342604 ~ 11345773 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043803
AGAGCTCTATCGGATAACGCACCTCTCTGCCTCAGGAGATGGAAGTCGAGGAACAAATTACACCGCGTTCTTGCAACTGTCTTCATAGACAGAAAGGAAATATGGAGAAAACTATTCACAGATGGCAATGCTGGAGATCTGATAGCCTTAGTCAAACAGGTCTCAACTATCTTTTGATTGAATATTGAAATTTGACAGATTTTCAAGTTCATTGACACTGATGTAAATGCAGGAGTAAAGGAGCTAGGCAAAtttcaaatatattatattgCAAGCAACACCCCGGACTCATTAGAAAGAAGTGTGCAgTGTCCTTTAACAGACTCAACTCAGACTGGCAACACAACTAGTTTGCTGACGCTGCTTGAAGAAAAGCCTCTTCAATCCTGAGAGAACATGAAGACTGTTAAAAAGTTGCTGTCAGTGTCCTTGTAGAGAAACATGGATTGTGAGTATGTGGTTTGTTTATTTCATGTAAGATGTATTTatttgcaaattaaataaattacatttatttaaataagttatatattaaaataaattctacatttaaaaaatatttcaaataaatacatttaacaatttaTCCCAATCAATTCTGAAGTACCACTGTTTAGTCAATTTTTTGTTTGTCAATGTTTGTGTATAAGCAATTTATgcaactgtatttgttttttaccTTTTTAGCTATCCTTCTGGTATAGAAAAGCTGGTACTAGCAAAAGAGATTCTGTCATTGTTCCCCTCAGGTGCCCTTTGGTGAAAATGAGGGACATGAGAATGTAAGaatgtttttacattataaacTGAATTTATTAGGAATGTGTATATAAGTTGCTCATTTATTTGACTTTCATTagttctgtttttacattactaatgtcaggaggatttttttttttgctaggccATCACACAGTCGGACGGAAGCTTCAACAGAGCCAGTGGGTGTACAGTTTAAAACATCATCATTGTACACCGCAACCTTCTTCACCAAGTCCAGATGAAACCGTACCAAGTGAGTTGTTGTCTCTGATAAAGAAGATGCGACCAGACAATTTATCATCAATAAAGACTGCAATCAATCAAACCTTCAGTTACAGAAGAAGATGGATAACAACAAAATCCCTTCAAAATCTCTTGCTGAAATCTTCAAGGACTATCCCAGATTTCTTGACATGCCAGCtttggtaatagacatgctcaaCTAAGACAGAACTTTAcacagacatttatttcataattgtaatattaatatttctttgtttctgatttctttctttctttaaagaTGGACATTGAATTTTCCAAGCTCACAGATAGGAACGAAGACTTGTTTATCCAGAAAAGGGAAGGGACGATAATTCCAGAACTCAAAGAAATAGCATCTTGGAGAAGAATATTGACATCAGACTCTTACTGAAGATGGCTGACAATCAGCATGATGGTATGAGTTTCAGCCAAAATATCTGTTGCATGTGCACACTTttctaaaaatagtttaaaagatAAAACTTAATGTGAATATTAATATTCTATTAAAGATATTAATttctaatatattttgtttaaattcttATTTTGCATGTGACCTGTATCTTCACTTCAAGATGAGCTGTTAAACTGTTAAAGATCCTTATTCATCTTCTTCCACCCACTGCCTCTGGGAGAAGTGTTGCTGGGAGTAAATGCTGTGTGACTTCTGCTGTGTCCTACCTGTTGGAGCAAGTGCCGGTATAGTTTTTATTGGTTTAGcttatgataaataaaatgtttctaatgcagcaacaTTTTCTTATGCTTTTTATTGTTTCATTCCTGAAGGCTGGTACCACCGTTACATCTTTGCTCACTGAATCCATGAAAGGGACCCTGAAGTCAGCTCAGCCGCAGTTGGTTTCTATTGGTTGTCTAGGACATGGATCCTTGTACGTGTACGTGTACTTGTAGCTGTGGCAAAGAATGACTCTTTTGCTCTTCCACTCGATCCTGAAAGCCTGACCTGTGCTGTAGACAGACTTTTCAAATTCTTCTGGCTGTGCAATCTTCAGTATCCATGCCAActgtcttctgttttttttttttgagtatatatatatatatatatatatgacttgtCCTTGTCCCAGTCATCTTGCACACGATTAAAGGTCATGGAATTAATTGCTAAGGTGCAGTCTTGTACCTAATTGAAATAAGCATGTACACCTATCCAAAGtgtctttaaaatgattttgtaatTTGGCATTTAAGGGAAATGCATGCACTCTCTGATAGTCACAACCTAACTTTAATTTGTTGTCAAAATCGTTGCCCTAGAACATATCATAATTTAAATTCCTTTTTAAAACATCTCAAcagatcattttaaaattaattcatgCCCTTCTGAAGAGTCAGGACACA

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0035295 tube development biological_process
GO:0043049 otic placode formation biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0050793 regulation of developmental process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0030902 hindbrain development biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0030916 otic vesicle formation biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043803 True 2406 lncRNA 0.35 3 11342604 11345773

Neighbor

gene id symbol gene type direction distance location
XLOC_022180 cntn3a.2 coding downstream 211921 11014693 ~ 11130683 (-)
XLOC_022179 NA coding downstream 345348 10994789 ~ 10997256 (-)
XLOC_022178 pdzrn3a coding downstream 428329 10828716 ~ 10914275 (-)
XLOC_022177 rybpa coding downstream 556204 10762684 ~ 10786400 (-)
XLOC_022176 eif4e3 coding downstream 597285 10724042 ~ 10745319 (-)
XLOC_022182 CR388030.1 coding upstream 186567 11532340 ~ 11532470 (-)
XLOC_022183 CR388030.2 coding upstream 241644 11587417 ~ 11587532 (-)
XLOC_022184 si:dkey-178k16.1 coding upstream 518450 11864223 ~ 12015139 (-)
XLOC_022185 NA coding upstream 670930 12016703 ~ 12020611 (-)
XLOC_022186 AL929345.2 coding upstream 716521 12062294 ~ 12121657 (-)
XLOC_022174 NA non-coding downstream 711180 10628152 ~ 10631424 (-)
XLOC_022173 NA non-coding downstream 714532 10625357 ~ 10628072 (-)
XLOC_022172 NA non-coding downstream 948160 10292168 ~ 10394444 (-)
XLOC_022167 BX324190.1 non-coding downstream 1489594 9852896 ~ 9853010 (-)
XLOC_022187 AL929345.1 non-coding upstream 722347 12068120 ~ 12068234 (-)
XLOC_022192 NA non-coding upstream 1328555 12674328 ~ 12830279 (-)

Expression


Co-expression Network