XLOC_022185


Basic Information

Item Value
gene id XLOC_022185
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 12016703 ~ 12020611 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044716
ATGCAGCACATGAGCTGGATGACACCAAACGTCACAGCACTTCGCTGTGTTGTCCTCAAAGGCATTCCCATTTTACTCGGTGATGACTCCAGTGAATTCTACAAGACTTGCTCTGATACAGAGAGAGACGAGGCCCTAGAATGCATCACTGTTGGTGTGCTGACAGTTGTCAGTGAAGGTAGTCCTCACGAGGGTCAAAGCTCAGTGGACCTCCAGCCCATCTCCACTGCCATCATTCTGGAGGGAGTTATTGTCATGGATCATATTAAAAACTTGCCTCAGGCAGTTTGTCCTTTGTTTGGTCTTTCATATGCATTGCATTTGGATTACCCAAAATGCATGGCAAATACACTCAACTTCATTCAGACTGTGATGCTTGGACTCCCACCAAAACTGTTAACTCTGAAGAACAGTCTTCTGGGTTAGAACAGTAAAGAGCCGTCGGCTGTCAGATAGCACTTTGTAAGCTTTGCAGCCATTAATGTTCTCCTCTTATGAGAGAAAGTTTGATGCTTTCATGGAACTGTTCTCGCTTATTTAAGTtctcaatggaaaaaaaaaagaatattccaTTAAAGTCTACCATGTTATGCAGGTATGCTAATGATGGAAATAGTGCCACGTTGTGTTGCAATGAGTTGTTAGTTGTTATTACAACAagtaaatgtttacatttgttttttgggaaaacttttaatgatttttttatttgtgttggtTTAATCCTTGGACTGCTCTCTTTGGGACACAAAAGTATTTGTTGTACTTTCGGTTTTGATCAGAAATGCATTGATTTTGCATGCACTGAAATCGTCCTGTAGTTACCTGTTTAATATTGGAAGACATGCATACAATTGGCtcacagaaatgtttttattttattttattttttattttttttccttgtcattttatacagttaaatcAAACCACAACTTGGTTGTTTAGCTGCTGTTTTGTACTTGAATGTGCATTGAATAAATTTTGTAATGGAGCTGAATCAAACCAGTGAGTGTTCTTTTAAATTATATGTTTGTGTTGTGCTTGCCTTTATCACATAGTAACAGCAAAAATAGATAAATGGGGAAGAGAAAAGGCCACATGTTGCAGCTAATTAAAGGAAATTGGTTTCTTTAATTTAAGTGAACTTGAAAAATGAGTGAGCAGAACTGATAGTGTTAAGTTGTAGGTATTTAGTAATTCTAAGTGGGGTTAAATTTATATCAAGCAATcaacacaaaatgaaaaaattaagttaacactAAGCATGGCTATTAAGTTACATGAACATAAAAAAACGTGTTAGTGGTACTACTTGATATAGTActgcacacttaaaaaaaacaagcttttctAACTCACTAATCTTAAGTTtactttgcttaattttttt
>TCONS_00044965
TATATACTGGGAGCTGTCATTGTGGGTTATAGGCCTATGTTACAGCTTTCACATGTACTTGGTTGTGCtaaattgttgtatttttatttaacagtttcctTCCAGGCACAAGCAGATGGTGATCAATCCACACATTCCATAATCCCAGCAATAAAAGGTATTTTCAACtaataactgtattattattgCATGCTAAAGTAAAAGTTATGCTTACATCAGAGCAATTGGATTACAACAAAAGCTAAGAAAATATTGTGTTGAAATTATTTCATTATAGTATATTTCATCATACagaatattttatgcatattttgaatTTCAAATATTTGATGTAATTAGTATTTCTGGACTGTCTCTATAGATATTGTGGGTTCGATTTATAGTCCATCATACCCAGGACTACAGTTCCCTTGATGTCTAACCACATAAGCGAGTCATTTACCATTTACTTTTTGTACTGCTGTGTTCACTTGTCTTAAAGAAGTTCATTGATTAAAAGCTTGATAATTAGATTTTTGCAAGGATTTAGTTTTTCCTATAGCTCTGGTATTTCAAATCTGATACTGCATTTGAGTGTTTTTGTCTTTATGTTGCTAGGTTTGATGCCAAAAtgatcttttctttcttttcagattttcaaacagtTATCAAAATGGACCAGAGGTTGTTACTGAGAGTCATCATCGCTGAAGATGATATAAGTAAGTTGACTTTAATTAAGAGACCACAGTCCATTGAAGAATTCAAAGTGCAACTTGTGGATAAACCGTCACTGCAGTATGACTTTAAACTGCAGTATGAAGATCAAGACTCCAATAATGCCCTCTGCAATTTGACTGAAATAACTGATTTACCTGAATCACATCCCTCTTGTGACTCTCCATTTAACAGCATTGTCATCACCCACCACAACATTAGACACTGAGGGCAGCACAGCAGACACTGAGATCCTGTCGCCTGTAGGAGCATCACCATCGCTAAGACAACAGTGGCCAGAATTCTTTGACATACCCAATTAGCACATATCACAGAGAGACAGGTAAGCAATTTTTGTTCTCAaccaataaaataatgcaaataaacataaattcaaGGTGTGTGACTAGAAATCCAAACACTTGTTGGAATGTTAATCCCTCTGCCACCTCTCCATCCCTACCCATTTCTCTCTACTTTTTCAGGTGTTTGCTGAGTTTAATGGAATCGCCAGTAAGAATCTTGAGAGAGACTTCTTTGAGGCTCTGGACCAGGATGCCCCACGGTTCATTGaacttttcaaaacaaaaaagggAACTGTTGGCCAGAAACTCAGGGAGCTGATGCAGCACATGAGCTGGATGGTAAGTAGGTTTATTTTGCTTTTGATCTGTGTGATAGTTCATCAATTAAGTTCTAAATGAGACCATCCAGACCAacctattttatttcctgtctggTTGTGCCTTGCAAATTACTCTGTTAACTGGTCTTTTCTCGCTCTGTGTATTATTAGACACCAAACGTCACAGCACTTCGCTGTGTTGTCCTCAAAGGCATTCCCATTTTACTCGGTGATGACTCCAGTGAATTCTACAAGACTTGCTCTGTAAGTACTTgcacataagaaaaagtttggtctTGTAGAACACTTAGAATTGAAGACAAGGAGACTTGGTTCTTTCTTCAGCAGGATTCTTTTTTGAGAACATGAGCTGCTGCAGTCAAGTGTGATCAAGGCACAACAAAAGGGttaaatatatcatataattTTATTGACAAGTACACATTTCCATTGCCAACACTTAGTGTCAGATAACTTAAGGACATTGCTATTGCTACAGTTTCTATGACTGCTCCACAGATTTCATGTTgcaaattttacacacacacacacacacacacacacacacacacacacacacacacacacacactttaccaaaataaaagaggaattaaaatgaaaactaaaatttacaattttaatttgagTTGTCACTATTATTGCGTGAGCGTTAATAAAGAGCTTTTGTAAAACTATTTGTAGTTTCTTTTTTACgtttggcttttcattttaatattggctGTCTTGCCTCGAGACTGTAGTGAAAATGAAATGTGAAATCAccaattgcattttatttttcaatttgacAGGGGTGGTGCAGTGTCACCATGAGAATGAAATCATTTCATTGTCAATTTTGTCACACATTTTGCATACAGTTTTCTCTAATGAAATCGTTAATCtggttttaattttcattttagtcatttaatttatttaaatttggcaGAAAATGTCTTCCATAGATCTTAAACATATTCTTAAATTTGTAATCCTACAGTCTGCATGAACATAAAACTATACCTGCGTTGACATAGATGTAATTCTATCTGctcaatatacaatatacattttGTACAGTGATTGATGTATTTTGTAGGTTGAAAAGTCAGTGTCATTCTTTGAGGATGTATAGACCTTTTTAGCTTTAGTTTAaccataacaaatacattttgtttgctttattgttaCAATCCAGtgtgaaaacatatttaaaaccaTATTCTCTTATAACATTACAACACTAAAAAAGAATGTTTTAGAATAGCATAAATTGCAATGCTGAAGAATGTGTGTCTTTTAGGATACAGAGAGAGACGAGGCCCTAGAATGCATCACTGTTGGTGTGCTGACAGTTGTCAGTGAAGGTAGTCCTCACGAGGGTCAAAGCTCAGTGGACCTCCAGCCCATCTCCACTGCCATCATTCTGGAGGGAGTTATTGTCATGGATCATATTAAAAACTTGCCTCAGGCAGTTTGTCCTTTGTTTGGTCTTTCATATGCATTGCATTTGGATTACCCAAAATGCATGGCAAATACACTCAACTTCATTCAGACTGTGATGCTTG
>TCONS_00044717
GGCCTATGTTACAGCTTTCACATGTACTTGGTTGTGCtaaattgttgtatttttatttaacagtttcctTCCAGGCACAAGCAGATGGTGATCAATCCACACATTCCATAATCCCAGCAATAAAAGattttcaaacagtTATCAAAATGGACCAGAGGTTGTTACTGAGAGTCATCATCGCTGAAGATGATATAAGTAAGTTGACTTTAATTAAGAGACCACAGTCCATTGAAGAATTCAAAGTGCAACTTGTGGATAAACCGTCACTGCAGTATGACTTTAAACTGCAGTATGAAGATCAAGACTCCAATAATGCCCTCTGCAATTTGACTGAAATAACTGATTTACCTGAATCACATCCCTCTTGTGACTCTCCATTTAACAGCATTGTCATCACCCACCACAACATTAGACACTGA

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0048732 gland development biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0008152 metabolic process biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1901861 regulation of muscle tissue development biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0016202 regulation of striated muscle tissue development biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0000469 cleavage involved in rRNA processing biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0048634 regulation of muscle organ development biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0090501 RNA phosphodiester bond hydrolysis biological_process
GO:0030684 preribosome cellular_component
GO:0030687 preribosome, large subunit precursor cellular_component
GO:0032040 small-subunit processome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0005488 binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044716 False 1393 lncRNA 0.36 3 12016703 12019292
TCONS_00044965 False 2895 lncRNA 0.36 1 12017717 12020611
TCONS_00044717 True 419 lncRNA 0.38 2 12019687 12020580

Neighbor

gene id symbol gene type direction distance location
XLOC_022184 si:dkey-178k16.1 coding downstream 1564 11864223 ~ 12015139 (-)
XLOC_022183 CR388030.2 coding downstream 429171 11587417 ~ 11587532 (-)
XLOC_022182 CR388030.1 coding downstream 484233 11532340 ~ 11532470 (-)
XLOC_022181 NA coding downstream 670930 11342604 ~ 11345773 (-)
XLOC_022180 cntn3a.2 coding downstream 886020 11014693 ~ 11130683 (-)
XLOC_022186 AL929345.2 coding upstream 41683 12062294 ~ 12121657 (-)
XLOC_022187 AL929345.1 coding upstream 47509 12068120 ~ 12068234 (-)
XLOC_022188 fam217b coding upstream 134554 12155165 ~ 12158685 (-)
XLOC_022189 phactr3a coding upstream 212162 12232773 ~ 12345764 (-)
XLOC_022190 wfdc2 coding upstream 398002 12418613 ~ 12423778 (-)
XLOC_022179 NA non-coding downstream 1019447 10994789 ~ 10997256 (-)
XLOC_022174 NA non-coding downstream 1385279 10628152 ~ 10631424 (-)
XLOC_022192 NA non-coding upstream 653717 12674328 ~ 12830279 (-)
XLOC_022193 NA non-coding upstream 655691 12676302 ~ 12832883 (-)
XLOC_022198 NA non-coding upstream 1541107 13561718 ~ 13565609 (-)
XLOC_022199 NA non-coding upstream 1602908 13623519 ~ 13625585 (-)

Expression


Co-expression Network