G281141


Basic Information

Item Value
gene id G281141
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 60287388 ~ 60303967 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU318843
TTCTTCGTAGTTTTTTTATTGTCATTAATTGTTAAGAGCATTTTTATATTAGTACCTTATCAACAGGAGAAAAAACTGTGTACATCTAATTTTAATGACATTAACAGTTGCTGTAGGTTGGGGTAGAGGATAGGAGATAGGGGGATGCAGAAAGTACATAGAAGCAAACAAACATCAGGAATActaggagaggaaggagggctgAATACCACAATGGCAACAGAAAAAATACACCGTAACACTTTATCAAACAGATGCAACAATATTTGTTGAGTTTCCTTTTTTTAAGTTTGTTtatatgaaatgtattttttttatgcaTTTTCCCCCTTTATTTCCCCACCCTAAATGTTTTACACAAAACAAACCTAGCATCTAGAAGTGAACTGTAAGGACACAGGGTCCAGAGTTCCACAGCTGCTTCCTAAATTGAATATTTAAATAATAGTCATAGTTTCATTCACAATATTGTTCAGACAACTGCAAGCCCTCTTGAGTGCATTCTCAGCCTGCTCGAAGAGCCTTGGGTTGTTCATCAAACACTATGGACTAAAAGATCTTACAGCCATCCAATGCCTACTGTAGCTAGCGTTAGTGAATGGATCGTGATCACAGCTTCTGTGAGCTTTCAGCTACATCAAAGTTTCTTTTGAACTGAGATTTGTGAGATGAGAATCACTGCAGCATCCTCTTAAACTTAACCAGGACTGGCAAACCAGCCTTCTAGAAGAAAAACTCCCAGAGAGAACTCTTGAGAGTAGCATTATTTAGTACTCTGaaagtaaaatatattttataatcagAAATATGTCATGTGTATCTGAGAATTGTATTATGGCATTGCCTTTGCCATTGAGATTTTATGTTGGGACTCTTAATATGAAACTACCCTTCCCAGACTCACCTGCGTGTGAGGAGGATTCACGGGAGAGATGTGTGAGTGACAGAGAAGTGAAGTAATGGAGATGTAGCCTAATGTGTTGTGCTACTAAAGTATGTGCTGCTGCAACTTGGAATGATTCAACTCTAAAAAATATCTTGATTGTAACCTGACTTTTTATCATCGAAATCCACGGGCTCTCGGACAAGGTGATAGATAGTTAAGTAACATAGTTAGGGTACATTTAATACTCTAAGTAAAATAAGCCCTGTTCGAGCCAGAATGGCCCATATGGGCAGGAGCCtaactcctgtttctgtagtgtgaggcagcttgatgtacaagtacaccccctggacaggaagcTAGTCTGCCACAGGGCCTTTAGTACTCTATTGCAGGCCTGAAAGATGCACGTCTTAACAATATCAGCACAGTTGTCTGAAGTCAACTTCAACAAGCATAACATACTAGTCAACTAATATCTACAAAAACATGAAGAAGTGTTCATATCTTTATCCAATGATTCAGTAAATAACTTACTCAAATCCTTTTATTTCAAATAGAAAATAGCCTCTTTCCGTAACTAGAATTGATACATGCTCATCATACCATTATCTAGTGCTTGCAGTAATGCAATTGTTGCAATAAGTTAAACTTAAAGgacttttttttctcacttttttTAAATCGTTTTTTGAAGAGATGTTGTTGCTGACAAAGAGCTcgcatatatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttt
>TU318844
TTCTTCGTAGTTTTTTTATTGTCATTAATTGTTAAGAGCATTTTTATATTAGTACCTTATCAACAGGAGAAAAAACTGTGTACATCTAATTTTAATGACATTAACAGTTGCTGTAGGTTGGGGTAGAGGATAGGAGATAGGGGGATGCAGAAAGTACATAGAAGCAAACAAACATCAGGAATActaggagaggaaggagggctgAATACCACAATGGCAACAGAAAAAATACACCGTAACACTTTATCAAACAGATGCAACAATATTTGTTGAGTTTCCTTTTTTTAAGTTTGTTtatatgaaatgtattttttttatgcaTTTTCCCCCTTTATTTCCCCACCCTAAATGTTTTACACAAAACAAACCTAGCATCTAGAAGTGAACTGTAAGGACACAGGGTCCAGAGTTCCACAGCTGCTTCCTAAATTGAATATTTAAATAATAGTCATAGTTTCATTCACAATATTGTTCAGACAACTGCAAGCCCTCTTGAGTGCATTCTCAGCCTGCTCGAAGAGCCTTGGGTTGTTCATCAAACACTATGGACTAAAAGATCTTACAGCCATCCAATGCCTACTGTAGCTAGCGTTAGTGAATGGATCGTGATCACAGCTTCTGTGAGCTTTCAGCTACATCAAAGTTTCTTTTGAACTGAGATTTGTGAGATGAGAATCACTGCAGCATCCTCTTAAACTTAACCAGGACTGGCAAACCAGCCTTCTAGAAGAAAAACTCCCAGAGAGAACTCTTGAGAGTAGCATTATTTAGTACTCTGaaagtaaaatatattttataatcagAAATATGTCATGTGTATCTGAGAATTGTATTATGGCATTGCCTTTGCCATTGAGATTTTATGTTGGGACTCTTAATATGAAACTACCCTTCCCAGACTCACCTGCGTGTGAGGAGGATTCACGGGAGAGATGTGTGAGTGACAGAGAAGTGAAGTAATGGAGATGTAGCCTAATGTGTTGTGCTACTAAAGTATGTGCTGCTGCAACTTGGAATGATTCAACTCTAAAAAATATCTTGATTGTAACCTGACTTTTTATCATCGAAATCCACGGGCTCTCGGACAAGGTGATAGATAGTTAAGTAACATAGTTAGGGTACATTTAATACTCTAAGTAAAATAAGCCCTGTTCGAGCCAGAATGGCCCATATGGGCAGGAGCCtaactcctgtttctgtagtgtgaggcagcttgatgtacaagtacaccccctggacaggaagcTAGTCTGCCACAGGGCCTTTAGTACTCTATTGCAGGCCTGAAAGATGCACGTCTTAACAATATCAGCACAGTTGTCTGAAGTCAACTTCAACAAGCATAACATACTAGTCAACTAATATCTACAAAAACATGAAGAAGTGTTCATATCTTTATCCAATGATTCAGTAAATAACTTACTCAAATCCTTTTATTTCAAATAGAAAATAGCCTCTTTCCGTAACTAGAATTGATACATGCTCATCATACCATTATCTAGTGCTTGCAGTAATGCAATTGTTGCAATAAGTTAAACTTAAAGgacttttttttctcacttttttTAAATCGTTTTTTGAAGAGATGTTGTTGCTGACAAAGAGCTcgcatatatactgtatatatatatatacagtaccagtcaaaagtttggacacaccaactcatttaagtttgaattttttaaaaactattttctacatgttagaatattagtgaagacatcaaaactatgaaataacacacatggaatcacgtagtaaccaaaacagtgttaaaagcaaatcagaatatattttagatttgagattcttcaaagtagccaccttttgccttaatgacagctttgcaccctcttggcattctctcaaccagattaatctggaatgcttttccaacagtcttgaaggagttccaacatatgctgagcacttgttggctgcctttccttcactctgcggtccaactcatcccaaaccatctcatccttcttggtcaaattgcccttacacagcatggaggtgtgttttgggtcattgtcctgttgaaaaacaaatgatagtcccactaagcacagaccagatgggatggagtattgctgcagaatgctgtggtagccatgctggttaagtgtgccttcaattgtaaataaatcacagacagtgtcaccagcaaagcacccccacacctcacacctcctcctccatgctttacggtgggaaccacacacatggagatcatccgttcacctactgccatgtctcacaaagacatggcagttggaaccaaaaatctcaaatttggattcatcaggacaaaggacagatttccacaagtctaatgttcattgctcatgtttcttggcccaatcaagttttttctctctttaatggtgtcctttagtagaggtttctctaaagcaattcaaccatgaaggcctgattcacacagtcaacTCTGAACAGTAGATGTTGAGATGTATCAttaacttgaactctgtgaagcatttatttgggctgtaatttctgaagctggtaactctaatgaactctgcagcagaggtaactctgggtcttccattcctgtggcggtccttgtTAGAGCAGGTTTCATCATagaacttgatggtttttgcgactgcacttgaagaaactttcaaagttcttgaaatcttccggattgactgaccttcatgtcttaaagtaatgatggactgtcatttctcttagcttatttgatctgttattgacataatatggacttggtcttttgccacccctgccttgtcacaacacaaacgcattaagaaggaaagaaattccacaaattaggcacacctgttaattggcacacctgttaattggcacacctgttaattggcacacctgttaattggcacacctgtaaattgaaatgcattcctggtgactacctcatgaagctggttaaaaTAATGCCaaatgtgtgcaaagctgtcatctagacaaagggtggctactttgaagaatctcaaatataaaatacatttttgaaacactttcttggttatatggtt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU318843 False 1708 lncRNA 0.37 2 60287388 60303967
TU318844 True 3056 TUCP 0.38 2 60287388 60290567

Neighbor

gene id symbol gene type direction distance location
myl1 LOC100135947 coding upstream 1308 60277245 ~ 60286080 (+)
LOC110505381 NA coding upstream 17489 60267642 ~ 60269899 (+)
erbb4b LOC106586446 coding upstream 235094 59870559 ~ 60052294 (+)
ikzf2 LOC106586445 coding upstream 705432 59556678 ~ 59581956 (+)
LOC110505376 NA coding upstream 772327 59513445 ~ 59515061 (+)
LOC118964303 NA coding downstream 78707 60382674 ~ 60383352 (+)
tgfbr2l LOC106586454 coding downstream 330572 60634539 ~ 60654313 (+)
LOC110520315 ube2e3 coding downstream 1027392 61331359 ~ 61370875 (+)
LOC110520316 itga4 coding downstream 1171909 61475876 ~ 61505428 (+)
LOC110504376 LOC106586465 coding downstream 1286091 61590058 ~ 61647253 (+)
G281128 NA non-coding upstream 24806 60262368 ~ 60262582 (+)
G281082 NA non-coding upstream 71276 60215884 ~ 60216112 (+)
G281054 NA non-coding upstream 118946 60168239 ~ 60168442 (+)
G281052 NA non-coding upstream 121240 60164479 ~ 60166148 (+)
G281047 NA non-coding upstream 129270 60157806 ~ 60158118 (+)
G281166 NA non-coding downstream 18186 60322153 ~ 60323132 (+)
G281197 NA non-coding downstream 75241 60379208 ~ 60379424 (+)
G281200 NA non-coding downstream 85182 60389149 ~ 60389407 (+)
G281203 NA non-coding downstream 88154 60392121 ~ 60392369 (+)
G281212 NA non-coding downstream 102331 60406298 ~ 60406524 (+)
G280315 NA other upstream 232971 60052716 ~ 60054417 (+)
G277973 NA other upstream 2497056 57789734 ~ 57790332 (+)
G277296 NA other upstream 3022496 57264567 ~ 57264892 (+)
G275553 LOC107595854 other upstream 4371255 55915329 ~ 55916133 (+)
G275542 LOC106586374 other upstream 4386645 55900194 ~ 55900743 (+)
G281591 LOC106586456 other downstream 436272 60740239 ~ 60757350 (+)
G281714 NA other downstream 587557 60891524 ~ 60893778 (+)
G281996 NA other downstream 729799 61033766 ~ 61037105 (+)
G282707 il-1rii other downstream 1653421 61957388 ~ 61964066 (+)
LOC110520339 lrrc63 other downstream 1889637 62193287 ~ 62200069 (+)
G281142 NA non-coding downstream 115 60290682 ~ 60292657 (+)

Expression


Co-expression Network