G281579 (LOC106586456)


Basic Information

Item Value
gene id G281579
gene name LOC106586456
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 60723582 ~ 60727146 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU319349
CGTAGTTGTTCCTGAATGACCACAGGTCCTGTAATCTCCCTAGGCTCGCTAACTCCTCTGGTGTTGGTAGCTCTGATTCTGAAGAGATAAGTCTCCTTCTCTGTCAGACCAGTGACGGTATGCTGGGACATGGACTGTTTAACGGTGGCCACTGCACTCCATCTGTCTGATCCAACGATGTTAGCTTCAATGACGTAGCCCGTCAGTCTGCTTCCACCATCATGAAGAGGTTTCTCCCAGTTAAGTATGGCAGAGGACTTTCCAATATCCACAATGTGCAGATCTTGAGGAAGGCTGGGTACTTCACAGACCAACACTGATTCAGGGGTTTCACATGGTTCTCCAACACCATATATGTTCTCTGGTAACACTCTGAAGAAGTAGTGTACTGATTCCTCCAGGCCAGTAATTCTGAATAAGGTCTTCCTGCATTCTGTTGTAATTGTTTTGTAGGATTTCATTGAAGCTTCACGTTTCTCAATGATGTAGTTGTTCACAGGGGCTCCACCGTCAATAGTTGGTACGTCCCATGTAATGACGACAGACTCCTTTGTGTAGTCTTTGACTCTAACTGAACCAGGTGGTCCAGGAGTGTCTGGAAAATACAGAAATTATTAACGGACTGttcacggctctcgaccttcgcctctcccgagtccattcGGGgtttgcagcgatgagacaagactgtaactaccaattagatacCACAAAATtctggagaaaaaggggtaaaaaaaaaagaatacaaaaaaagagagagagctatgtatatacagtgccttgcaaaagtattcggcccccttgaactttgcaacc

Function

NR:

description
titin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU319349 True 819 lncRNA 0.45 2 60723582 60727146

Neighbor

gene id symbol gene type direction distance location
tgfbr2l LOC106586454 coding upstream 69269 60634539 ~ 60654313 (+)
LOC118964303 NA coding upstream 340230 60382674 ~ 60383352 (+)
myl1 LOC100135947 coding upstream 437502 60277245 ~ 60286080 (+)
LOC110505381 NA coding upstream 453683 60267642 ~ 60269899 (+)
erbb4b LOC106586446 coding upstream 671288 59870559 ~ 60052294 (+)
LOC110520315 ube2e3 coding downstream 604213 61331359 ~ 61370875 (+)
LOC110520316 itga4 coding downstream 748730 61475876 ~ 61505428 (+)
LOC110504376 LOC106586465 coding downstream 862912 61590058 ~ 61647253 (+)
LOC110520321 LOC106586467 coding downstream 921559 61648705 ~ 61663408 (+)
LOC110520324 LOC106586470 coding downstream 1046287 61773433 ~ 61832413 (+)
G281538 NA non-coding upstream 89203 60634084 ~ 60634379 (+)
G281492 snx4 non-coding upstream 101949 60619072 ~ 60621633 (+)
G281525 NA non-coding upstream 107768 60615592 ~ 60615814 (+)
G281517 NA non-coding upstream 117290 60605699 ~ 60606292 (+)
G281515 NA non-coding upstream 120293 60603003 ~ 60603289 (+)
G281680 NA non-coding downstream 122036 60849182 ~ 60923455 (+)
G281754 NA non-coding downstream 225994 60953140 ~ 60955335 (+)
G281957 NA non-coding downstream 239182 60966328 ~ 60966638 (+)
G281958 LOC105896813 non-coding downstream 240423 60967569 ~ 61023059 (+)
G281970 NA non-coding downstream 259392 60986538 ~ 60987139 (+)
G281141 NA other upstream 433015 60287388 ~ 60303967 (+)
G280315 NA other upstream 669165 60052716 ~ 60054417 (+)
G277973 NA other upstream 2933250 57789734 ~ 57790332 (+)
G277296 NA other upstream 3458690 57264567 ~ 57264892 (+)
G275553 LOC107595854 other upstream 4807449 55915329 ~ 55916133 (+)
G281591 LOC106586456 other downstream 13093 60740239 ~ 60757350 (+)
G281714 NA other downstream 164378 60891524 ~ 60893778 (+)
G281996 NA other downstream 306620 61033766 ~ 61037105 (+)
G282707 il-1rii other downstream 1230242 61957388 ~ 61964066 (+)
LOC110520339 lrrc63 other downstream 1466458 62193287 ~ 62200069 (+)

Expression


Co-expression Network