G281754


Basic Information

Item Value
gene id G281754
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 60953140 ~ 60955335 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU319542
AAGCAAACTGAAAAAACGCGACATTAATTGATTACACATCATGATCAGAGTACCCAGTGCATCATCATTACTGTGATGGAAATACTTCAAGCACATCGTTGTCAGTGATGGATCAAAGTCCAATATCTCATTCCCACTTCAGTAAATATCTACTGCATTTCCTCAAGCAAGTAAAAAGACAACGACAGCTGAGTAGTAGAGATGACTATTTGAATAGGAGTGTGGGTGGATTTAGTGGGAAATGTCCTATGATCATAAAAACTATACTGTAGGTGCGATAAaatgcaaacatttttaaaataattatGAGGTCTTAAGTTGTTAGCTAAATGGGCTGGTCGTTCATTCTATCCATTATTTTTTGCAATGATTGCTATGCTAAACAAATCATTGGCATGTAGCTCCAGGCTAGCTACTGTACTTCTCCTTTGCTCTAGCCAACTAAAgaaagcagctgaaatgacagtaACTATGTGTACTTTCCTTGGTTTTACATTTGTTTGTTTCttttgccatttctttggatatatccattataatgatcctgataaatgaatttgtcTGGCTCAGAGAAACTGTCAGTCACTTCACGTTCATATGCATGGCACGGAGGAGATCGCAATAAACCTTCCAcaggtcagagaagcagacagcaaggtttagacaaaccctAACTGTTGCAAACTAAATGCTAACCTAGTAGCATGGGGGAAAATTGTTTAGATACTTTTTAATGGGGGAGATGATGTTAAGGCTATAATATAAATTGACTGGCTGGGTTATGGGACAGTAGTCTGGCTGATACCAAACTCGAAGTCCTCCTGACTTGAGAGTCTGGAAAGGCTGTTTTGATGTTGTCTCACTCAAACACCTACAGGCACAGCCACACAAAGCCCCTGAGTGCTGCCCCCTTCCATTACAAATGTTGGATTTTCAAATCCAAACAATGAGAGGTCTCATCCAATCAATCCATCTGCTCAATTTCTGAGTGAATATTGCATTAATTAACAGCCTCCTTTCCAGACCAGTGAGTCACAGCTCTTCATTGCTGTGTGGTACCGTGAGTCGCGTCAGCCAGGCTAGTGGATAGTGGATGCGCATTAATAAATCTAATTGAACTGTTAACAGGCATTACCCGGTGAATGCGGGGATTGTTGTGCTATAACTCTCTTCTATCAACCAGTCtgcatccaggatccaaacaacctgttttataaatgtttttatataaTTTACATGGTGACAGCATGGTATCCCAGGAATACTGAACATTCCAAAGCACAAAACACTGCGCCTGAATCTGATTCATTGCAATTCAATCTTTGAAGACTGCAATCATAGAAATACTATTTATTTATGCCTATTAATTAGCCATTGTCAACATCTCATCTATGGTTATTTTGCTGGTGGCTCACTGTCACCCTACGTTTACATATTACTCGTCCACTAGCCGGCTCCATTTTACCCTGGCAGATTACACCCAACAGCGTTACAATATTATGTTTTACCCTGGCAGTCAATGATGGTGATGATAAGGTAAGCTGTATTAAAGCTTTAATGGTCTAAGTTATATTGGTATTGAACTGTGCAGGTTTGATAGGAGTTCCTCCCTCTTCATCACACGAACCATCAACAGGGAAAGGCAGTGGTTTCTCTTTCCATGTTTTCTGTGCCTAACTAAAAGGCTttataaaaatgtaaatgaaaaacaaaaaacatttatttaaaaactGATAAGATATCCATAGTTTTTAAAAACGAACAGCACCTAATTACTTTAGGCTACATAGTGTGCCAAACTGAAACATTGACAATGCCCACAGCCTAATCTCTTGTGTACAGACTACATAACATAAATGGTGTAATTTACATGGGGTTGCCAAGATTACCCACAAGATtacccacaaaaaaaaaaacataaatatgagTGCGCATCATGAATGAATGACTACACACCATTAATGTTATTCTGAGAGAAATTTGAGACATTTACTACTTTGGAGCAGGGGCCACTTCAGGTTTAACAAGGGCCGCTTCAGGTTTAACAGGGGCCGCTTCAGCTTTTGCAGAGGCAGGTTCACCTTGTACATGGGCCGCTTCAGCTTTTGTCGAGGCAGGTTGACCTTGTACAGGGGCCGTTTCAGCTTTTGCTGCTCCTTCTTTGGGTGGACATAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU319542 True 2175 lncRNA 0.40 2 60953140 60955335

Neighbor

gene id symbol gene type direction distance location
tgfbr2l LOC106586454 coding upstream 298827 60634539 ~ 60654313 (+)
LOC118964303 NA coding upstream 569788 60382674 ~ 60383352 (+)
myl1 LOC100135947 coding upstream 667060 60277245 ~ 60286080 (+)
LOC110505381 NA coding upstream 683241 60267642 ~ 60269899 (+)
erbb4b LOC106586446 coding upstream 900846 59870559 ~ 60052294 (+)
LOC110520315 ube2e3 coding downstream 376024 61331359 ~ 61370875 (+)
LOC110520316 itga4 coding downstream 520541 61475876 ~ 61505428 (+)
LOC110504376 LOC106586465 coding downstream 634723 61590058 ~ 61647253 (+)
LOC110520321 LOC106586467 coding downstream 693370 61648705 ~ 61663408 (+)
LOC110520324 LOC106586470 coding downstream 818098 61773433 ~ 61832413 (+)
G281680 NA non-coding upstream 29685 60849182 ~ 60923455 (+)
G281579 LOC106586456 non-coding upstream 225994 60723582 ~ 60727146 (+)
G281538 NA non-coding upstream 318761 60634084 ~ 60634379 (+)
G281492 snx4 non-coding upstream 331507 60619072 ~ 60621633 (+)
G281525 NA non-coding upstream 337326 60615592 ~ 60615814 (+)
G281957 NA non-coding downstream 10993 60966328 ~ 60966638 (+)
G281958 LOC105896813 non-coding downstream 12234 60967569 ~ 61023059 (+)
G281970 NA non-coding downstream 31203 60986538 ~ 60987139 (+)
G281976 NA non-coding downstream 36571 60991906 ~ 61027640 (+)
G282245 LOC106582271 non-coding downstream 251305 61206640 ~ 61223982 (+)
G281714 NA other upstream 59362 60891524 ~ 60893778 (+)
G281591 LOC106586456 other upstream 195790 60740239 ~ 60757350 (+)
G281141 NA other upstream 662573 60287388 ~ 60303967 (+)
G280315 NA other upstream 898723 60052716 ~ 60054417 (+)
G277973 NA other upstream 3162808 57789734 ~ 57790332 (+)
G281996 NA other downstream 78431 61033766 ~ 61037105 (+)
G282707 il-1rii other downstream 1002053 61957388 ~ 61964066 (+)
LOC110520339 lrrc63 other downstream 1238269 62193287 ~ 62200069 (+)
LOC110520346 htr2a other downstream 1412279 62367489 ~ 62408857 (+)
LOC110504398 LOC106586506 other downstream 1750996 62705451 ~ 62712740 (+)

Expression


Co-expression Network