G281958 (LOC105896813)


Basic Information

Item Value
gene id G281958
gene name LOC105896813
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 60967569 ~ 61023059 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU319783
cctcttatgtcttcagccttcgagatcctgcagggagccaggtttttcactaagttggaccttcgtaacgcttaccatctcgtgcgcatcagggagggggacgagtggaagacggcgtttaacactccgttagggcactttgaataccgggttcttcctttcggcctcgctaacgctccagctgtctttcaggcattagtcaatgatgtcctgagagacatgctgaacatgaatctggagtgacggtgaaaaaatcaggatatcgtcaaggtaaacgaaaacaaagatgttcagcatgtctctcaggacatcattgactaatgcctgaaagacagctggagcgttagcgaggccgaaaggaagaacccggtattcaaagtgccctaacggagtgttaaacgccgtcttccactcgtccccctccctgatgcgcacgagatggtaagcgttacgaaggtccaacttagtgaaaaacctggctccctgcaggatctcgaag

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU319783 True 499 lncRNA 0.51 2 60967569 61023059

Neighbor

gene id symbol gene type direction distance location
tgfbr2l LOC106586454 coding upstream 313256 60634539 ~ 60654313 (+)
LOC118964303 NA coding upstream 584217 60382674 ~ 60383352 (+)
myl1 LOC100135947 coding upstream 681489 60277245 ~ 60286080 (+)
LOC110505381 NA coding upstream 697670 60267642 ~ 60269899 (+)
erbb4b LOC106586446 coding upstream 915275 59870559 ~ 60052294 (+)
LOC110520315 ube2e3 coding downstream 308300 61331359 ~ 61370875 (+)
LOC110520316 itga4 coding downstream 452817 61475876 ~ 61505428 (+)
LOC110504376 LOC106586465 coding downstream 566999 61590058 ~ 61647253 (+)
LOC110520321 LOC106586467 coding downstream 625646 61648705 ~ 61663408 (+)
LOC110520324 LOC106586470 coding downstream 750374 61773433 ~ 61832413 (+)
G281957 NA non-coding upstream 931 60966328 ~ 60966638 (+)
G281754 NA non-coding upstream 12234 60953140 ~ 60955335 (+)
G281680 NA non-coding upstream 44114 60849182 ~ 60923455 (+)
G281579 LOC106586456 non-coding upstream 240423 60723582 ~ 60727146 (+)
G281538 NA non-coding upstream 333190 60634084 ~ 60634379 (+)
G282245 LOC106582271 non-coding downstream 183581 61206640 ~ 61223982 (+)
G282351 NA non-coding downstream 350669 61373728 ~ 61374361 (+)
G282350 NA non-coding downstream 351543 61374602 ~ 61374869 (+)
G282357 NA non-coding downstream 358165 61381224 ~ 61381473 (+)
G282373 NA non-coding downstream 374726 61397785 ~ 61398000 (+)
G281714 NA other upstream 73791 60891524 ~ 60893778 (+)
G281591 LOC106586456 other upstream 210219 60740239 ~ 60757350 (+)
G281141 NA other upstream 677002 60287388 ~ 60303967 (+)
G280315 NA other upstream 913152 60052716 ~ 60054417 (+)
G277973 NA other upstream 3177237 57789734 ~ 57790332 (+)
G281996 NA other downstream 10707 61033766 ~ 61037105 (+)
G282707 il-1rii other downstream 934329 61957388 ~ 61964066 (+)
LOC110520339 lrrc63 other downstream 1170545 62193287 ~ 62200069 (+)
LOC110520346 htr2a other downstream 1344555 62367489 ~ 62408857 (+)
LOC110504398 LOC106586506 other downstream 1683272 62705451 ~ 62712740 (+)

Expression


Co-expression Network