G282245 (LOC106582271)


Basic Information

Item Value
gene id G282245
gene name LOC106582271
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 61206640 ~ 61223982 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU320119
AGAAAAACAGAGCTGGACTACAAATATCAACATCCTCAGGTAATATATTAGTTTACAGTGAATGAGGAAAAGACTAGATTGACTAACATATCCTTGAGTCGTTCATTGAGCCTGGGAAGTCCCATATAGGCACAGAGCTCCTGAAACAAGATCTTGACGAAGATACGACTGGATGAGGTGGTGGTGTCCTCACTGACTTTAATACATTCCAGCACACTCCACGGGACTGAGTCTGTGTACAAGAGATGGGCGAACATTCTAGCAACGTTCCTCAGTTTATTGGTCTCTAGGCGATGGATGGTTTCATACTGCTCCATGAAGATGGCCTCAAAACTCTCCATGTAGTCCTTCTTCAGCAGACAAAACCTCCCTGCTAGAAGACCAAAGAACTTCTCGTATGTCCTCTGTTGGGCACAGCAGTCCAGAATCATGTTGCACAGCTCTTTCGTTTGGCTGTCAGGAAAGTCCATCTTGATCAATTTGTGGGCACACTCCTCAAAATCCAAACTGTTGAAAGAAGAGAAACATGTATTCACTATTCATCATGACTTAATAAGACAATAATAATTAGCCAATAAGTGCATAAGTTTGCATTATCATATTCCAAACAGCTTTATCAGGCCATATGGACTAGGACAGAGTGTCCAGGCACTAGGCCGGGTTATGTCTTTGCTTGGATGGAATTTTAAAAACGTATCACACAGAAAAAATAAACTTTATCTGCCCTCATGTTTATTTTAGAAGTACATTCAGTACGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU320119 True 758 lncRNA 0.41 4 61206640 61223982

Neighbor

gene id symbol gene type direction distance location
tgfbr2l LOC106586454 coding upstream 552327 60634539 ~ 60654313 (+)
LOC118964303 NA coding upstream 823288 60382674 ~ 60383352 (+)
myl1 LOC100135947 coding upstream 920560 60277245 ~ 60286080 (+)
LOC110505381 NA coding upstream 936741 60267642 ~ 60269899 (+)
erbb4b LOC106586446 coding upstream 1154346 59870559 ~ 60052294 (+)
LOC110520315 ube2e3 coding downstream 107377 61331359 ~ 61370875 (+)
LOC110520316 itga4 coding downstream 251894 61475876 ~ 61505428 (+)
LOC110504376 LOC106586465 coding downstream 366076 61590058 ~ 61647253 (+)
LOC110520321 LOC106586467 coding downstream 424723 61648705 ~ 61663408 (+)
LOC110520324 LOC106586470 coding downstream 549451 61773433 ~ 61832413 (+)
G281976 NA non-coding upstream 179000 60991906 ~ 61027640 (+)
G281958 LOC105896813 non-coding upstream 183581 60967569 ~ 61023059 (+)
G281970 NA non-coding upstream 219501 60986538 ~ 60987139 (+)
G281957 NA non-coding upstream 240002 60966328 ~ 60966638 (+)
G281754 NA non-coding upstream 251305 60953140 ~ 60955335 (+)
G282351 NA non-coding downstream 149746 61373728 ~ 61374361 (+)
G282350 NA non-coding downstream 150620 61374602 ~ 61374869 (+)
G282357 NA non-coding downstream 157242 61381224 ~ 61381473 (+)
G282373 NA non-coding downstream 173803 61397785 ~ 61398000 (+)
G282374 NA non-coding downstream 174063 61398045 ~ 61398461 (+)
G281996 NA other upstream 169535 61033766 ~ 61037105 (+)
G281714 NA other upstream 312862 60891524 ~ 60893778 (+)
G281591 LOC106586456 other upstream 449290 60740239 ~ 60757350 (+)
G281141 NA other upstream 916073 60287388 ~ 60303967 (+)
G280315 NA other upstream 1152223 60052716 ~ 60054417 (+)
G282707 il-1rii other downstream 733406 61957388 ~ 61964066 (+)
LOC110520339 lrrc63 other downstream 969622 62193287 ~ 62200069 (+)
LOC110520346 htr2a other downstream 1143632 62367489 ~ 62408857 (+)
LOC110504398 LOC106586506 other downstream 1482349 62705451 ~ 62712740 (+)
G284313 NA other downstream 1792344 63016326 ~ 63022591 (+)

Expression


Co-expression Network