XLOC_022196 (BX546500.1)


Basic Information

Item Value
gene id XLOC_022196
gene name BX546500.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 12926092 ~ 12931693 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043828
ttcatctgctccttatttgaagtgtctgcgttgtgtgacagttcattattatgatacgtgtttctaagtatgtgtgcctttctctctctgtgtttgtgtgggtgtcacgtggctgtcagtgggtgtttgttttcatgtcatcagctgagcggtcacatgatctttGTTACCGGAACTGTTCCGTAGCGCCGCTCGGCTgataatcagcgcgctacaggtgtagcgcattttttgtgcctataaatgttcagcgttcctgtctcacgttgtcagttcgttgttttgCTCACGGTTCTTTGTGTTTTGTCAGGCTCTTCTcttcgctggtggtgagtggtcTGGTTGTATTCCATGTTGCAGTATCTGATGCTTCCTGTTTCTTCCTGATGAATGTGTGATCCGCTCTGTTGATGAAGTACATCTGAGACATCCCGGTCTCTTCTATGACGAATGTTTtatctgctctgttgatgagtttTATGAACATTTGATCAGTGTTGCCGAACCAGACCACCACTATATTATTCACCTGTTCAGTGCCTCCAGCCACTCACCATTATTCTGTCTATTTGTGAGAACTATATTAAAAGACTTTGTTTTTTCTTGCAATTGGGTTCCTCATCTTTTATGTCAcgtgacagaacgaactgaccagaTTTGAACCCAGCAAGTATGGAGGTTTCCAGCCAGACCATCCAAGCACTTTTTAATCAAATCACCGAGCTGTCTAATCAAGTTCAGCAACTCAGTTCGGGTCTCCAAGCCGGATCCACGTTGTCAGTGTCTCCAGTCAAACTACCACCCAGTCCTGTTTTTAATGAGAGTTCACGGACCTCCGAACCACGACTACCACCACCACAAAGTTATTCAGGTGAACCCCATTTGTGCAGATCCTTTATTACCAAATGCGATCTTTTTATATCACTCCAGCCCTCATCTTTTCCCACTGAGGCGAGCAAGGTGGCATTTTTAATCAACTTACTAACGGACAAAGCTGCATTATGGGGAACAATGGTCTGGGAGAAGAGACTTCCCTGTTGTGTGTCTTTTAAAGCGTTTTCGGAGGAACTCCGGGTGGTTTTCGATCCAGCGACTTCGGGGAGAGAGGCAGCCAGACGACTCGCTGAGCTCCGTCAGGAGGAGCACAGTGTGGCGGAATATTCTATCGACTTTCGCACCCTGGCGGCCGAGTGCGGGTGGAACAGCGAAGCGCAGTGGGACATGTTCTTTCACGGACTGGCGGACCGTATTAAGGATGAAATCTACGTTTTGGAGCTTCCCAAGACACTGGACGGTCTCATTAACCTGGCCATAAGGGTGGACAATCGCCTTCAGCGCAGGAGTGCCCACAGAGAGCTTCGTTCACAACGTTTGGCTTCACAGACCGGTTGTTCGGAGGCTACACTTCCTGTTCCAGAATCCGAGCCCAGACAAATGGGAGGATTTCGCCTCTCAGCGGAGGAGAAACACCGCCGACGCACAAGTGGTTTGTGTATGTACTGTGGGGTTGCAGGGCATTTTGCAGCCTTATGCACGGTCAAGAACAATAATTCACCTAATGGTAAGCGTTTTTTGGTGGGAGAGATTATGACTGGAAAGGACTCTCCCAATACCACATCTCTACCCATTAAGTTGGGATTTAATTCAAGTTTTCATTCCTGTTATGCGCTCATTGATTCAGGAGCGGAAGGGAACTTTATTGACTCTGATTTAGTTAATGAGTTAAAAATTCCTTTCTCTCCTCTTTCCTCACCCATAGCAGTCCAAGCACTTAGCGGATTATCTCTTCCAACCATCACACACATCACAGCTCCTATTAGACTTGTCACTTCAGGAAATCATACtgaaaacatttctttctttcttactaaATCTGTTAATAATCCTGTCATTTTGGGACATCCGTGGTTGGTCCTACACAAGCCCCACATTAACTGGGGTCACAGTGCAGTTTTTTCATGGAGTGAGAGCTGTCATAAGTCTTGTTTATTGTCTGCTTGTTCCACTGttccttgttctgtgtttcaggaggagcaggtggatctgtcaaacgtgcctcgtgagtaccatgacctgaagagagtgttcagtaagtcccgggctgcttctctacctcctcaccgtccctatgactgtgctatagacttattgccaggtacgtctccgcccaaAGGCAAGTTATATTCACTgtctgttccagagagggaggccatggagaaatatatttctgattctctagcagccaagatcatccgcccgtcttcttcaccggcgggggcgggatttttttttgtgaaaaagaaggatggttccctTCGCCCATGCATTGACTATCGAGGgttgaacagcatcacggttaagaatacctaccctttgccgttgatgtcttcggccttcgagcgcctgcagggggcgaactttttcacaaagttagatctccgcaatgcttatcatttggttcgcataagacccggggatgagtggaaaacagcgtttaacacccctagagggcattttgagtactgcgttctgcccttcggcctttccaacgctccggctgttttccaggcactcgtcaatgacgtgttgagagatatgatagatcagtttatttatgtctacctggatgacattctgattttttctcactctctccaggaacacgttcaacacgtcaggcgagtgttgcagaggctgttagagaatgggctttatgtcaaggcggagaaatgcgtttttcatgcacagtcggTTCAGTTCTTGGGACatattgtgtcagtcgaggggatgcgcatggatccagagaagattcaggctgtggtagattggccaaccccagattcccgtaaggccctgcagaggtttctgggctttgccaatttttaccggcgttttattcgcaatttcagccagctcgccgcacctCTGACTTCCTTGACCTCCTCCAAGATGCCGTTCAGGTGGTCCAGTGCAGCTGAAGCTGCCTTTTCCAAACTAAAAGGCTGCTTCGTTTCAGCCCCTATCCTCATTGCCCCTGATCcttcccggcagtttgtggtggaggtcgatGCGTCTGAGGTTGGGGTCGGAGCCATTCTGTCCCAGCGCTCCTCCTCGGATGGCAAGATCCATCCTTGCGCGTATTTCTCTCATCGATTATCTCCTGCTGAaagaaattacgacattggtaatcgagagtTGTTGGCCGTCAAActtgctttggaggagtggcgccATTGGTTAGAGGGCTCGGGGGTGCCCTTTATCGtctggaccgatcataagaatcTTGAATATATTAGATCTGCTAAAAGATTaaactccaggcaggctcggtgggcattatttttcggacggtTTAATTTTACGATCTCTTACAGACCAGGCTCCAAAAACATCAAACCTGACGCATTATCACGTCTTTTCGACCCATCGGATCGCTTGTCATCACCTGATCCTGTGCTTCCCCAGGGGATTGTTGTAGCGAACATTTCCTGGGAGATCGAGTCGAGGGTTCGCACAGCCTTgaatggggtaacgcccccgatcgGATGCCCACCGAGTCGGTTATTCGTGCCGGAGGAATTACGGTCCGACGTTGTCCGGTGGGGTCATTCCTCCAAGGTAGCTTGTCACCCAGGGGTGAGTCGTACGTTATTCGTTATCAAacaacgattctggtggccaACTATGGCTCGTGATGTGCGCGATTTTGTATTGGCTTGCTCTGTCTGTGCGGTTTCTAAGTCTTCCAATCGCCCACCTGCTGGGCTCCTTCAACCGCTGTCAGTACCTTCAagaccctggtcacacatctcGCTAGATTTTGTTACGGGTCTTCCATCCTCTAACGGTAACACGGTAGTTTTGACCGTGGTGGACAGGTTCTCGAAGGCTGCTCATTTTAtctctctgcccaaattaccatcagccagagagacagcggttgctgtcattgatcatgtctttcgcattcatggcctcccgacggacgtggtttctgacagggggcctcagtttgtctctagattctggagagaattctgccgtttattgggggccactgttagtctttcttctggttttcatccccagagtaacggtcagaccgagagagccaatcaggatcttgagcgCACATTGCGATGTTTGGTCTCGCAGAATCCCTCCTCCTGGAGTCAGCAACTttcgtgggtggagtacgcacataattcgttaccagtgtcgtccacgggcctttctccgtttcagtgtagtctaggttaccagccaccagtttttcccagtctggaatccgaagtcgcggttccctctgttcacgcctttgtccagaggtgccgtcgcacttggaacagggccagacagaccctcctccgaGTGGGgacgcgcaccaaggctaaagccgatcgccaccggtctaagcctcccgtttacgttgtcggtcaaaaagtgtggctttcttcTAAAAACATTCCTCTCCGCACCGTTTGCAATAAgttagctcctaaatttattggcccttttattgtcactaaaatcattagtccagtggcaatccgcctcaaattacctccagcgtacaggagaattcatcccgtatTTCATGTATCCaaagtaaagcccgtttttcatacggcaattaatccGCACACTCCAGTtcccccccccgccgcgtctcgtagatggggagactgcttattcggttaagcgcattctggactctagacggaggggacgaggatttcagtacttggtggactgggaaggttacggtccGGAGGAGAGAAGTTGGGTTCCAGCCGGGGACATACTGgaccactctcttatcgatgattacaatcgccaggtaggcTTGTCTGGGGACGCCAGGAGGCGTCCCTAGGGGagagggtaatgtcacggttgtggattcatctgctccttatttgaagtgtctgcgttgtgtgacagttcattattatgatacgtgtttctaagtatgtgtgcctttctctctctgtgtttgtgtgggtgtcacgtggctgtcagtgggtgtttgttttcatgtcatcagctgagcggtcacatgatctttGTTACCGGAACTGTTCCGTAGCGCCGCTCGGCTgataatcagcgcgctacaggtgtagcgcattttttgtgcctataaatgttcagcgttcctgtctcacgttgtcagttcgttgttttgCTCACGGTTCTTTGTGTTTTGTCAGGCTCTTCTcttcgctggtggtgagtggtcTGGTTGTATTCCATGTTGCAGTATCTGATGCTTCCTGTTTCTTCCTGATGAATGTGTGATCCGCTCTGTTGATGAAGTACATCTGAGACATCCCGGTCTCTTCTATGACGAATGTTTtatctgctctgttgatgagtttTATGAACATTTGATCAGTGTTGCCGAACCAGACCACCACTATATTATTCACCTGTTCAGTGCCTCCAGCCACTCACCATTATTCTGTCTATTTGTGAGAACTATATTAAAAGACTTTGTTTTTTCTTGCAATTGGGTTCCTCATCTTTTATGTCACGTGACacctttactttttaatttatataatttaaatttattttacaataaactcACTTA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000086495

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043828 True 5602 mRNA 0.48 1 12926092 12931693

Neighbor

gene id symbol gene type direction distance location
XLOC_022195 ndnl2 coding downstream 12961 12897878 ~ 12913131 (-)
XLOC_022193 NA coding downstream 93209 12676302 ~ 12832883 (-)
XLOC_022192 NA coding downstream 95813 12674328 ~ 12830279 (-)
XLOC_022194 si:dkey-96f10.1 coding downstream 137830 12682353 ~ 12788262 (-)
XLOC_022191 snx21 coding downstream 472392 12428725 ~ 12453700 (-)
XLOC_022197 CR450832.1 coding upstream 357390 13289083 ~ 13295923 (-)
XLOC_022198 NA coding upstream 630025 13561718 ~ 13565609 (-)
XLOC_022199 NA coding upstream 691826 13623519 ~ 13625585 (-)
XLOC_022200 CR391935.2 coding upstream 704100 13635793 ~ 13635907 (-)
XLOC_022201 CU929459.1 coding upstream 782693 13714386 ~ 13714500 (-)
XLOC_022187 AL929345.1 non-coding downstream 857858 12068120 ~ 12068234 (-)
XLOC_022185 NA non-coding downstream 905481 12016703 ~ 12020611 (-)
XLOC_022183 CR388030.2 non-coding downstream 1338560 11587417 ~ 11587532 (-)
XLOC_022202 NA non-coding upstream 874666 13806359 ~ 13809597 (-)

Expression


Co-expression Network