XLOC_022215 (phf20b)


Basic Information

Item Value
gene id XLOC_022215
gene name phf20b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 14992800 ~ 15036789 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043859
GCCGGAGAAAACAAACTGCGTGGATGAAGGCGCTCTCAAAGCATGCGACTTAATGCACTCTCGGCGCATTTGGACTCGCTTTCTTCGGTTTCGGAGTACATTCATCTGCAATAGAGGTTGCTGATTGTGTGTGTCCAGCATGACAAAGAGTCCTCCTAACAGGCGTGGGATCGTGTTTGAGGTGGGAGCGCAGCTGGAGGCCAGAGACACCCTGAAGAACTGGTACGCAGCCAACATAGAAAAGATCGACTATGAAGATGAGAAAGTTCTGATCCACTACAGACAGTGGAGTCACCGCTATGACGAGTGGTTCGACTGGAGCAGTCCGTACCTCAGACCCGTGGAGCGAATCCAGCTGAGGAAACAGGGGCTGAATGAACGACAGTGCGCTTCAGGTTTTCAGGTCAACCAGAAAGTGCTAGCCAGCTGGTCTGACTGTCGCTACTACCCTGCTAAGATCCTGTCTCGAGACAAAGATGATTTCTACACAGTGAAATTTTTTGATGGGATCATCAAGACAGTGAAGGGAATTAAAGTCAAGCCGTTCCGTAAACAGAGCTCTGATGGAAGGAGCAATCAGCAAGCTCGAAAGCGTGCCGATCAGAACGAAAAAGAATTGAAACCCAAGGAGAATGGAAACAGCCGGCACAACAGCTCGAGACACAGCGTATCAGACCACGATGGAGAGAGCGAATCAGAGGCGGACGAAGACACCACAGTGATGGATGAGTCCACAGACCTCCAGAACGGCGGAGAGAAAGAAAGCACAGAAACGAAGATGGTAAACGATTCAGAGGTGAGTTCTGCTGAGCACCAGCCCAGTGAAGACCAGAACCAGCCCAGTGAAGACAAGACCGAAAACCTGGAGAATGGAAATGTAGAGATTAAAatagaggaggaggaagaagaagagatGGATGGAGGACAGGAGGAGGCTAAAGTACTTCATAATGGCATTGACAAGAACGATGAGCACAAGGGCGAAGCATCGGACGAAAGTCCTAGTTTGCCCAAGAGGACACGGAGCAGGACGGCAGATGGAAAAGAAGCAGAAATGGTCAATGGTCCAGAACTGAGGAAGAGACGAGCTTCAACAGGACAGACGTCACCGGCCAAAAGAAGCAGAGCCAATTCAAGCACAGACAGAAACACTCAGACTCCCATCAAACCAGTTAAATCTGACTCTGTCCCAGACACTTTGGACATTAAGGATGAAAAGACGAGTCCTGCAGGAAAACCAGCCCCTGCAGAAGAGGCAGGATCTACCCCTGAACTTGCTGCAGCACTCAAACGTCAAGTCCACCTCCCAACCACAAACAAGTACAGCAGAGAACCACTTTACAGGGTCATCAAAAACCAGCCTCCCCCTATCCTGTCCATTGAGCTGGACCACAACCCCTTCAAATGCAAGATGGCCGGATGCCTTAAGTCTTTCCGCAAGGCGTCCCTCCTGCACTACCACATGAAGTACTATCACGCACAGAGCGACCCGAGCCCCCCACGCTGCGTCCAGACGCGCTCTTCAGACAAGCAGAGCCCCAGTCAGGAGACCCCCCGCAGACGCCGCACCGTCTCTGCTTCACACCATACTCCATCTCCTCTGAGTGACAGTAAGTCGGGTCACTCTCTGTCGCCCCCTGCTGTGGGTATCAAGCACCGGCAGCGCTCGGCCACACTGGGAGCCGAGAGGAGCAAAGAGAACCAGGTCTTCAACCGCTCGCTGCATGACGACAGAGACTGGGTTGCCAAGGAAACAGCGCTGAAGGAACGCGAGAGGCTGAGAGAGAAACGGCAGAGGGAGTTCTTCCGCATCAAgctgaagaaaaagaagaagaagaaaaggaagTCGAAGTCAGGTGAAGACAGCAGCAGTGATTTGTCCTCGGACAGTCCAGTATGGAGTGAGGACGAGTCTGACACTGAGCTGGATCTGAACGTCCCCCTCTCGGAGCAGGGGGTGGAAACAGTCACTCACAGCTCTGAGATCGTACGCTGTATTTGTGAAGTGCAGGAGGAGAACGACTTCATGATACAGTGTGACGAGTGTCTGTGCTGGCAGCATGGGACATGTATGGGTCTCTATGAGGACAGTGTGCCAGACAGTTACAGCTGCTATATCTGCAGAGACCCACCAGCTCAGAGGCAGAGTCAGAGGTACTGGTACGATAAAGACTGGCTGAGCAGTGGACACATGTACGGCTTGTCTTTTCTGGAAGAGAACTACTCTCACCAGAACAGTAAGAAGGTGACGGCAGCACATCAGCTTCTAGGAGACGTCCACCGAGTGTTTGAGGTCCTCAACGGCCTTCAGCTCAAGATGAGCATCCTACAGACACAAGCCCATCCGGACCTGAAGCTCTGGCGGCAGCCCTGGAAACATGCAGACGGCCTGCGGAGGAGGATGGCAGGTGACTCTGGCATTGCTACTCCATTGCCGCCCTCGCCTCCTGAAATGGGAGAGAATGAGTTTGAGACACTAAAGAGCGAAGCCCCGTCGCCTATGGAGACGCATTGCTCTTTTCAGGACTCGTACATTAGCAGTGAGCACTGCTATCAGAAACCCCGTACCTACTACCCAGCAGTGGAGAGAAGACTAGTGGTGGAGACGCGGGGCGGCTCTGAGCTGGAGGACAGTCTCAGGAGCACAGAGGACCTGCTGGAGATGGCGGAGCAGAGGTACGGCACGCAGCTGGACCACGACCAGCACAAGCTGGCTGATCGCTCCTTTAGTAAGGAGCTGGAGAGCCGAATGAAACGACTGGTGTCCGCTGAGCAGGAAAAGAGTTGTGGGGTTGAAATCAAGGAAGAGGAGCCTGACCCTGTAACCCCTGACCCCAAGCCTGACCCTGACCTTGTGCTACACCAGCAGTGGCAGCTCAATCTGCTGGAGCACATTGAAGCGGTGCAGGATGAGGTCACGCACAGAATGGACCTCATCGAGCGAGAACTTGACGTGCTGGAGAGTTGGCTGGACTACACAGGTGAGCTGGAGCCTCCAGATCCACTGGCTCGACTCCCTCAGCTGAAACATCGCATCCGACAACTGCTCACTGACCTGGGAACTGTCCAGCAGATCGCACTCTGCTCCTCGTCCTCTTGAGGGCGCCAGAGAACAGCTCAAACTCGATCGCCAATAGATACACgtgcctgtttgtttgtttttttactttctctCTCTAAAAAAATCAAGCAAGCTAATGTTTCTGGCACATGTCTGTTGGACTGATGAACATCCAAGCTAACTGATATCTGATGCAAACAACGGTTTTTATTTTATAACGCTTCATTGTAGCACTTAGCTGTCTGTCATAGACCTAGCAGGTATTTTGAtatcgtttgtttttttttgtcatttcctcTGTGTTCTTGACATGCTAAATAATTATTTGTGTTACTTCATATGTAATCAGTTTTTTTTGGGACATTTTCCCTCTGGGTAAAGAGcttaaaaaaggaactgaagGGTATTTTGCTgtagttaaagtaaaaaaaacaaaaacaaatgttaaatatgagcataacaatatacaaaagctatattttaaatctgaaaacaCTTGCATTTTACTTCTATATTTGTACTAATGGCTATGAGAGTCATGTGATCTTGTAAATAACTCAACCGATTGCTTCAATAcgtgttcttttttatttttaaatgaaactatTGCATTTACAGTAAAGACTTTCTGTAATCTTTGATCTGTTGTGAATACTGTAATTGTGGGCTTTCCGCCTATAACCAtccctttttgttttattttgttgacaCAATTGATGTTGGTTGCATTTCAAATCTGTGGACTTTTTCCACTGGCGCATATTACATAAGCACAGAATGTTGTTCACTTGCTGACCGAGCATGTATCTCTGTATGTctgtttcttttcttcttctaATTTCTGATTTTGTTTCTATTCACTTTCCTGTCGCTCTCGAGGCTACGCATTTTTGAATTAAGACATTAGATGCCTTTTAAGTTATTGTAATTGTGAATTTAAGTTATTGATTTTACTTTGGTCCATTGGTTTTCTTTTATACGGATTATTGAATGATTAGAGAGAACGAGAGAAAAGCTGGGGTCTTTTTTATTAGTGTTCTCGCCCTGTGGTGTTAGGATTTTCATTTAGATCATTactgtttatataaaaaatgtgctTAATCTTACTTCAGGCAAATTTGAGTGTCATtcacttttaaacacacacatacacacaagagaCATTTGTTATAAGCCTGTGGATTGATATAATCCTGCCGAtgggtgtttttatttttatttgatttgtttttgtaagTTTCTTTGTACAACTAATGAGTGGTTGACCAATTGACTTCCTCAGTATTgtgtattatatttttttgtctgcCCTGTTGCTTTCCAGTAATGGAAATCTACTTATGAATCATAAGTATTGCTgacttttttatgtattttttttcattgttgccATCTTATGTCAGGGGTCCCTTGAAATCTACAAGTTCTGAAAAATATTGACATATAATCCAAATGCAAGgaaataaatgcaaacatttaaacTCAA
>TCONS_00043860
CACCGGCAGCGCTCGGCCACACTGGGAGCCGAGAGGAGCAAAGAGAACCAGGTCTTCAACCGCTCGCTGCATGACGACAGAGACTGGGTTGCCAAGGAAACAGCGCTGAAGGAACGCGAGAGGCTGAGAGAGAAACGGCAGAGGGAGTTCTTCCGCATCAAgctgaagaaaaagaagaagaagaaaaggaagTCGAAGTCAGACTCTCACAGCACTGAGGAGAGCATTGGCCCAAAGCCTCTCCCCTGCAATCTGAATTCGGCCCACAAATTGCCCCTCTCCCTCACACACCGATCCTACACAGGACACGGCCCCGAAAAGATGCTCAGCCAGGGTGAAGACAGCAGCAGTGATTTGTCCTCGGACAGTCCAGTATGGAGTGAGGACGAGTCTGACACTGAGCTGGATCTGAACGTCCCCCTCTCGGAGCAGGGGGTGGAAACAGTCACTCACAGCTCTGAGATCGTACGCTGTATTTGTGAAGTGCAGGAGGAGAACGACTTCATGATACAGTGTGACGAGTGTCTGTGCTGGCAGCATGGGACATGTATGGGTCTCTATGAGGACAGTGTGCCAGACAGTTACAGCTGCTATATCTGCAGAGACCCACCAGCTCAGAGGCAGAGTCAGAGGTACTGGTACGATAAAGACTGGCTGAG

Function

symbol description
phf20b Predicted to enable metal ion binding activity. Predicted to be involved in histone acetylation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of MLL1 complex and NSL complex. Is expressed in liver and yolk syncytial layer. Orthologous to human PHF20 (PHD finger protein 20).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016573 histone acetylation biological_process
GO:0071339 MLL1 complex cellular_component
GO:0044545 NSL complex cellular_component
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040822-33 Predicted to enable metal ion binding activity. Predicted to be involved in histone acetylation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of MLL1 complex and NSL complex. Is expressed in liver and yolk syncytial layer. Orthologous to human PHF20 (PHD finger protein 20).

Ensembl:

ensembl_id ENSDARG00000038737

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043859 False 4547 mRNA 0.47 18 14992800 15036789
TCONS_00043860 True 659 processed_transcript 0.55 6 15001359 15014574

Neighbor

gene id symbol gene type direction distance location
XLOC_022214 sla2 coding downstream 1879 14808221 ~ 14990921 (-)
XLOC_022213 gss coding downstream 223277 14743087 ~ 14769523 (-)
XLOC_022212 NA coding downstream 254414 14735335 ~ 14738386 (-)
XLOC_022211 NA coding downstream 409261 14574498 ~ 14583539 (-)
XLOC_022210 CR388373.2 coding downstream 577587 14407888 ~ 14415213 (-)
XLOC_022216 si:ch211-218g4.2 coding upstream 9755 15046544 ~ 15090782 (-)
XLOC_022217 BX537335.1 coding upstream 71059 15107848 ~ 15107962 (-)
XLOC_022218 sulf2b coding upstream 167033 15203822 ~ 15330230 (-)
XLOC_022219 NA coding upstream 395624 15432413 ~ 15563597 (-)
XLOC_022220 NA coding upstream 653742 15690531 ~ 15697049 (-)
XLOC_022207 BX897727.1 non-coding downstream 1003318 13989364 ~ 13989482 (-)
XLOC_022203 NA non-coding downstream 1168608 13818507 ~ 13824192 (-)
XLOC_022221 NA non-coding upstream 659738 15696527 ~ 15764318 (-)
XLOC_022224 BX511184.1 non-coding upstream 909365 15946154 ~ 15951976 (-)

Expression


Co-expression Network