XLOC_022219


Basic Information

Item Value
gene id XLOC_022219
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 15432413 ~ 15563597 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044718
CAGCGATTGAAAGAGAATGTGAGTAAAGCAAAAGAGGCAGGCGTGTTTTATCAGATGGCTCTTGCCGTCCTGATTCAGAAAGCTCACTGCCTCTGGTAGAGCTCAAACacggaaagagagagagaaagagagagagtgcaaGGTACTTCAGGAAATTGAAACCGCTTCAgttagaactttttttttcactCCTCTCTCTTTAAAACTTTCCATCCAGCCTCTCTCGCTCTTACTTCTGTGTTGTCATTTGAAAGTTTGACAAACTTTGCAGCAATGCTGTGACAACAGTGCAAAGGGGTCTAGGAAGACAGATATCAGGATAGAAGAAGACAAAAGTGCACTGTGACCAGCAACTCCTGGCTGGATCGCCAAATTCGGGGTCTCCACCGCAGGACAGAAGGGAACAAACTGCCACCTGCCTCCCCTGCAGCTGTGCGTGAGaaCCACCTGGATTGGTGAGCTCGATCAGTTGAGATCTTCTGAAGCAGCAGTGCATCTCTTTCGGAGAAGTGGAGAAGAAATCATTTCGCCTTTGTCAGGTAAAGCAATCAATCGTTCTTCTCCAGTGAGCAGTGGTCTTTCCATCTCTGC

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0051674 localization of cell biological_process
GO:0048738 cardiac muscle tissue development biological_process
GO:0048468 cell development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0072359 circulatory system development biological_process
GO:0007507 heart development biological_process
GO:0006928 movement of cell or subcellular component biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0055007 cardiac muscle cell differentiation biological_process
GO:0016477 cell migration biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0035051 cardiocyte differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048869 cellular developmental process biological_process
GO:0048870 cell motility biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:0040011 locomotion biological_process
GO:0003007 heart morphogenesis biological_process
GO:0007399 nervous system development biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0045111 intermediate filament cytoskeleton cellular_component
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005882 intermediate filament cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0099513 polymeric cytoskeletal fiber cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044718 True 591 lncRNA 0.47 3 15432413 15563597

Neighbor

gene id symbol gene type direction distance location
XLOC_022218 sulf2b coding downstream 102183 15203822 ~ 15330230 (-)
XLOC_022217 BX537335.1 coding downstream 324451 15107848 ~ 15107962 (-)
XLOC_022216 si:ch211-218g4.2 coding downstream 341631 15046544 ~ 15090782 (-)
XLOC_022215 phf20b coding downstream 395624 14992800 ~ 15036789 (-)
XLOC_022214 sla2 coding downstream 441492 14808221 ~ 14990921 (-)
XLOC_022220 NA coding upstream 126934 15690531 ~ 15697049 (-)
XLOC_022221 NA coding upstream 132930 15696527 ~ 15764318 (-)
XLOC_022222 eef1a2 coding upstream 287341 15850938 ~ 15878879 (-)
XLOC_022223 mrgbp coding upstream 336096 15899693 ~ 15916391 (-)
XLOC_022224 BX511184.1 coding upstream 382557 15946154 ~ 15951976 (-)
XLOC_022212 NA non-coding downstream 694027 14735335 ~ 14738386 (-)
XLOC_022211 NA non-coding downstream 848874 14574498 ~ 14583539 (-)
XLOC_022210 CR388373.2 non-coding downstream 1017200 14407888 ~ 14415213 (-)
XLOC_022207 BX897727.1 non-coding downstream 1442931 13989364 ~ 13989482 (-)
XLOC_022226 NA non-coding upstream 953385 16516982 ~ 16518846 (-)
XLOC_022227 CR318668.1 non-coding upstream 997636 16561233 ~ 16562161 (-)

Expression


Co-expression Network