LOC110522562 (LOC105017690)


Basic Information

Item Value
gene id LOC110522562
gene name LOC105017690
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 36039096 ~ 36123362 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601019.2
gagagagaaagagatctgagagcagagagacagagagagagagagagagagagagagagaaggggaagagagagagactacaggaACGCAGTCAGTTGCCTGTGCTGCTCAGTACCAGAAACAGGGAGCTGGGGAGGAAATGGAGGGGCTCAGGATCATCGGCGGGAACTGACATTAcagaccaggagaggagaggagagggagaactattggagaggagaggaggaaaggaaggggCTCGTCTGCACAACAGAAGATTTCTAAGgAGAGAGCCCAGGATTGAATGGGACCCACTATGCCGCCCAGTAAGAAGGCCAGGAGCCAGAACAACGGATTAGTAGCCACCCAGGGTCTGAGTCCTTTCTACAGGGAGGCGGAGGCAACAGACCTGTCCTTGTCCCTGTCGGCCTCCTTCTCCAAGGCCGAGGACGAGGAGCTCACCAGCCTCTCCTGGCTCCACGAGAGCACCAACCTTCTCAACAGCTTCTCTCACTCGGGGCTCCGCTCCGTCTCCCCCCTGCAAGATCCTGATGGTCACCCCataccccccctctccccttcctcctcctccccctcccccgaTCCATGTGACTCCTCTTCCTACGACATGGCCACGGGAGCCAATAGGAAGCCCCCGTATTCCTTCAGCTGCCTAATCTTCATGGCAATAGAGGATGCGCCATCCAAGAGGCTGCCGGTGAAAGATATCTATGGTTGGATCCTGGAGCATTTCCCCTATTTTGCTAGCGCCCCTACAGGCTGGAAGAACTCGGTGCGCCATAATCTGTCGCTCAATAAGTGTTTCAAGAAGGTGGACAAGGACAGGAGTCAGaGTATAGGTAAAGGCTCGTTGTGGTCCATAGATCCAGAGTACAGACACAACCTGATCCAGGCCTTGAAGAAGACCCCGTACCACCCCTACTCGCCGGGACTGGTTACCCCCTTCACCtcttctcccacctctcctcAGGCATATCACAGtcctctACTTTGGCCAAGGAGTCCCTTCTTCAGAAAGAATGGAGTTCTCTTACAAGTTTCTCAAGGCGTGATCCAAAATGGGGCCTGCGTCAGGAGCCATTGTCTGTTTCCTGTCATCCGACCCCTACCCATTAGCCCCGTGGGCAGAAGGACCACTGCGATAAGGTCAGCTCTGGGAGACTACCTGACCCCCTGTGACACCTCCCACCCTCCCAGCGACGACCTCCAGGAGGACCACAACTACAGCAATGCCAAATCCCCCAGCATGCCCTGTTCTTCCCAGGGGCCCTCCGTGTCCGATGAAGACGATGAAATCATTGCAGTGGAGGTGGGAGTCCACCGAGGGGTCAAATCCGAACCTAAAGAAGTCCCACTGGACTCTGCCTCCGTCTCCTTCCTATCCCAGCATGCCCGGCGACGGGGACTGCCCTGGACCAAAAACCGCCTGCGGGCCCTGAGTGACACACTGCCGCTGAAGAAGCGCCGTTCGGCAGCATCGGCAGAGAAGCCGCCGTTGGAGAGCGATGATGAGGAGATGAAGGAGGCGGCTGGGTCGTTGCTCCACCTGGCGGGCGTCAGGGCGTGCCTCAACAACATCACAAACCGAGCCAAGGCTGCTCAGAAAGAGAAGGAGCAGAAAGAGGCCCTCAGAAATTAACTAATGCCAGGCCATAGAGAGGCCTACACATCAGGCCTGTACACCTGGCCTACACACCTGGCCAGCACACCTGGACTACACACATATCGCCATGGCCTAGAAAGTAATAGCTGAGACACGCCACAAAGACCAACGGCTAAAAGCAGCGGGTTGGTGTGGTGTGTTGCAAGGTGTGTTAgcaatcacctgctgggtgttgACAAATGGTGGAGATTCAACATGTAGAAACGTTGTGAAATGAACAGAAATGGACAGCAGATATTCTGGTCAGAGTAGATAGGAAGGACACCAGCTGCTTCTAACCATTGGTGGTGTGTTGTGTCTCTGCTGCCTGATTCCCACTATTGACCCAAACTAAAGCCTATACTGTGCTGGCTCTGAACATGTATTTTCAGAGTGTCCTTTCCAGCATGGTTCCAGCAGCAACTATGGTGGATGAGGGTAACCAGGCCAGGAAGCCCCAGTACATCTCGGCTTGGCTCAGCTCAACTTTGGCTTccatagtgtgaaaagggtatatGGCCAGGCCTGAGCACAGAGTCCTTCAGTAGGACTACACACCAGGTCTACACACTGACCTATCAACCACCAACGGGCCAAGACATAGAACTCTATTCAAGCATTAGTCTCAATAGACATTACttcatctatctctctcactctatctctctctagctctctttctctcctccaggGGCATTAGGAGCATCCTACTTATTTGTGGCAATATCAGAAATCCATGTTTTCCTATATGTTTCCTATACGTTTCCTATATGTTTCCTATACATTTCCTATACGTTTCCTATATGTTTCCTATATGTTTCCGATACGTTTCCTATACGTTTCCTATACGTTTCCTATATGTTTCAATGCTAACTCTGATGGGTAATTGATTCTCATGTGTCTCggttgatgttgatgtttttaTGTTGTGTAAAGGGATGCAAGCCATAGAAAAATATGTTTTGTCACTAATTAGGGAAAAACATAGTAGAAAATGTCATGTTTGAGGAGACTAGCTGACCGGTTTGTGTAATCTGTAAGTGTCAGAGGTTACGTCTGTGAATCTGTAGCAAATGTCCAGTAATGTAAGCAAGGAAGTTGAGCCAATAATACTTACAGTTTTAAAACAGTTAAAACCTGCTGCTCACACCTCCTACGCCCATGAGCACAACATGTAAGACTGTGCCAAAGACAAGCGACCAGGTTGCCTGATGTAGCCAATCTGCTTACAAAGACAAATGTAAAGGCATAGCAACAACATATATGGTAATGTACGGCTCAGTTGGTGGAGCACGGCTGTTGCACCACCTAGGGTTGTGGATTCAATACCCGTGGCTACCCGCATAAATTGTGTTCATGCacgactgtaagttgctttggataaaagcatctgctcaATGGCAATGAGTATATTATTACATCAGAAGATCTTCAGTGAAGAGACAGGAGAATACCGTAAATGTCTACACAATTGTAAAAATCTGTTCTTAGAGAATCACGCATGCACTTAATTGACATTCATTACAGCAATTTATATTACCAATAGTAAAGGCATCATGGAGAACGGGGCACGATTCCTTTAAGAGCACTTTTTAATATTTAAGGATAATTAGAACTTTACTGTTACAATGGTTttttgttgtcatggtgatgaCTTAGTGCCGGGTCAGAGGCAATATATCTCCTCCATCTTGTGCTTGTTGCTCatctgcatctgaaatggcaccctattccctttatagtgcactaccttgtCCAGAGCGTCatgggctctggccaaaagtagtgcactatatagggaatagggtgccatttcagacacagattCACTTAGACTTTGTCCCTCAAACTCTTCCAGAATTTCTCTTCTATTAAAAAGTGAATGTCAGTTTAAATATACCCCATGTTACGACACCTGCCTATCATTTAACAGACTCACAAAACTATTTACATAAATTGTGGATTCGTTGTCGTTTTTATCTCTGTTTGAAATGTTTCCCATTCTTCCTCTACCTACTCTCATGAAAGTATAAGCAATTTGTCCAGTCTGGACAACTGTAAAAAGGTtagaaaatattttatttttcctttCTTAATTGAAGCAATTTGACCTGCAGGACTTTCTCAGTTATATTGCATGGGTGCTTGTAAATAAGATACAAAAGTAAATCATTTTTTATTCAAAGATCATGtaatataaacaatgtatttagcATGAAGCATGACTTATTTTCATATAAACTTAGATCCTACAAGAGAAAACTAAGTTTTTTGCAGACAATTCTTATTCCCTCGATTTTTgtttaatttaatttgattttgttTGTTGTAAATTGATAATTGTATTTCTTCAGATGAGCAGATTTAAAAATACAAATCTTCTTCAAGGAGAAATGTTATGGGGAAATCACTCTGCATTTATGAGGCCCTTCTACTCTGGGCTTTAGGTATAacagacctgggtttaaatactatttgaaagctttcaaatactttgaatgACCTtgagtgccagatgggcggggtttgtaCTTTGGGACTTTTCTATTTGTTCCATTGAGGCAAGCCCTATCAAGCACAGCCCAAGTATTTTAAATAAGGTCAAATACTGTAGCGTTTAAACCCATGTCTGTTAGGTATAAGGCGAGATTGAAAAGCCTCTAGTCTTCTGCCTCTTAAAAGATAAATATGTCAATGGTCTAGTGTTTTTCAGAAGTtatcaatagtgtgtgtgtgtgtgagtgtttgtgtgtgtccaacAACCATACACCCTTTAACATTGTGCTTGTTCTCAAGGCGTTGTGTTCCGATGTCTTTGATTGACATGATTTTATATTGAACAGCACATATTTCTTTATTTATCAcagtattttctcattttgtgaaTATGTTACTATTGGGTCCGAGTTTTCTCCTGGCAGAAACCTCAGTGTAAACTGACGGAGTATAAGGAACTGTTTAACATGGAATTTAGAATTCGTCAGAATGTTCAGAACAGAAGTTCCACTGTTCTAATTGGCTCCCTAGTCTACACCAGATTAGCATAGGCAAACCTTTTGTTCAAAGTTATGTCAGATACAATATATTAATGTATGACTCAATAGAGCCTGTTTTTATGGATTATTTACTTTGGAAAAATGACAGTACAAAGGGAAAGTATTATATAATGAGCGATGTTTAAACCCTGCCAATTGTTTAAGTTTTGAGTGATTCTGTACATTTAGCCCTGCCGTAGATGATTAGTGTAAGCTATAATGAGAATACATTAAAGCCTTAGTCAGTTCATGCTCTGGTATGTCCATATATACAtgcatacatttaaatgtttacctttatttaactaggcaattcagttaagaacaaattcttatttacaatgacgggcctGCCTAGAACAACATATgtttgaccttgtcagcttggggatttgatccagcaacgtTTCAATTACTGActcaaagctctaaccactaggctacctgctgcccaaaactgtacaaacatacatacatacatacatacatacatacattggaGTGAGATAATGAACATGTTTCTGGTACAACCAGCAGAGGTAATAGGGTTTGGACTGAGGTTATGTGCAGAGTAGAGTcagagtagagtcagagaggtccagagagagtcAGAGTAGAGTCAGAGTAGAGTCAGAGTATAGTCAGACAGGTCCAGAGAGAGTCAGAGTAGA
>TU392876
agagagactacaggaACGCAGTCAGTTGCCTGTGCTGCTCAGTACCAGAAACAGGGAGCTGGGGAGGAAATGGAGGGGCTCAGGATCATCGGCGGGAACTGACATTAcagaccaggagaggagaggagagggagaactattggagaggagaggaggaaaggaaggggCTCGTCTGCACAACAGAAGATTTCTAAGgAGAGAGCCCAGGATTGAATGGGACCCACTATGCCGCCCAGTAAGAAGGCCAGGAGCCAGAACAACGGATTAGTAGCCACCCAGGGTCTGAGTCCTTTCTACAGGGAGGCGGAGGCAACAGACCTGTCCTTGTCCCTGTCGGCCTCCTTCTCCAAGGCCGAGGACGAGGAGCTCACCAGCCTCTCCTGGCTCCACGAGAGCACCAACCTTCTCAACAGCTTCTCTCACTCGGGGCTCCGCTCCGTCTCCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601019.2 False 5348 mRNA 0.45 6 36039096 36123362
TU392876 True 445 TUCP 0.58 2 36039166 36072956

Neighbor

gene id symbol gene type direction distance location
LOC118964470 NA coding upstream 154856 35883168 ~ 35884241 (+)
LOC110522558 LOC106571671 coding upstream 219788 35803948 ~ 35819308 (+)
LOC110522555 LOC106608214 coding upstream 277837 35732092 ~ 35761259 (+)
LOC110521090 LOC106608213 coding upstream 315503 35561988 ~ 35723593 (+)
LOC110521089 LOC106608211 coding upstream 620672 35249617 ~ 35418424 (+)
LOC110522563 LOC106608227 coding downstream 15594 36138956 ~ 36158325 (+)
LOC110522575 NA coding downstream 915193 37038555 ~ 37040052 (+)
snw1 LOC106608236 coding downstream 1029662 37153024 ~ 37167042 (+)
LOC110517371 LOC106571681 coding downstream 1064648 37188010 ~ 37226273 (+)
LOC110522567 LOC106608238 coding downstream 1147811 37271173 ~ 37283482 (+)
G347210 NA non-coding upstream 57170 35981148 ~ 35981926 (+)
G347177 NA non-coding upstream 131156 35907689 ~ 35907940 (+)
G347173 NA non-coding upstream 137781 35901101 ~ 35901315 (+)
G347155 NA non-coding upstream 196817 35841957 ~ 35842279 (+)
G347233 NA non-coding downstream 2046 36125408 ~ 36128946 (+)
G347236 NA non-coding downstream 7087 36130449 ~ 36130907 (+)
G347604 NA non-coding downstream 10135 36133497 ~ 36133739 (+)
G347619 NA non-coding downstream 36359 36159721 ~ 36160047 (+)
G347636 NA non-coding downstream 36847 36160209 ~ 36160984 (+)
G347178 NA other upstream 130645 35908246 ~ 35908451 (+)
G347151 NA other upstream 205252 35833369 ~ 35833844 (+)
G346334 NA other upstream 964758 35073939 ~ 35074338 (+)
LOC110522546 LOC106608201 other upstream 1216914 34807607 ~ 34831281 (+)
LOC110522530 LOC106608164 other upstream 1499636 34536950 ~ 34541410 (+)
G348133 NA other downstream 1036732 37160094 ~ 37161123 (+)
LOC110522576 LOC106608246 other downstream 1322105 37445368 ~ 37501952 (+)
G349855 NA other downstream 2281283 38404645 ~ 38405464 (+)
G349877 NA other downstream 2308817 38432179 ~ 38434024 (+)
LOC110522591 LOC105024333 other downstream 2767021 38890314 ~ 38897681 (+)

Expression


Co-expression Network