LOC110522590


Basic Information

Item Value
gene id LOC110522590
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 38817900 ~ 38820524 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473345.2
gacagagaacattttacatttacatcccgCCCTGAATGTAAGCCAGGACATGACCAGACGGACCAATGCATTTACATTTCAATCGCGCCAAAACGGCCCAATCACAGCTGTGTATGCAAACCAACTGATCGGTAAACAGTTTTTTTAAACAGTaaaaaatagaagaaaaaaatgtTTCCTAATCAACTTGAAAAAATAAATGGAGCCTAACGAGATTGAGAAGGTTCAGGAGACAATAGACAGAGCCAGTGGCCGGGTCTTCTGAAGATCACGAGGAAGGAAATGCCTGGCCGCATCTCAAAGAACACTTCCGCTTcaagcagagaggaggagacagtaaCTATGGAATGTAAAGATGGTGGAGGTGGCTGCCTACAAAAACTCTGCTTCAAATTTTAGGAAACATGTAATGGTACAAAAAGTAAATgtgtaaatatgtatatattttttaaagtaaagttgtaaatgtattttattgcCATGAATGGCGTTTGTTGTGTAGGCTATGTAGCCAGTTTCATTCAATCTGTAGCgtaatgctaacgttagctagctcatcCTGTTGCTAGCTAGTTAGACGCTAACCCTGACCAATGTCTTAACACAGCTGAAGGAACTTTTGCCTGTAGTGCGGGCTACTACCTCATTGACATTATGGTGGCTAGTAGTTAGCCATCCCCATAATTTAAATTGTTGGGGATAGCTAAAAGTGAAATTAAGGAACTTGTttagataaaataaataattttgaGACCTGGGATTTTTAGAGGAAACATCCATTAAAGATGACAAACTACAATATGCTCACCTTTGCAACCACAAACAAAAGAACCAAGGAACTATCAAACACCTCTTCAACTTGCAAAGATATCTGAAATGGCAGTGGGAGGAGCCAGGTGCGTCTCACAAGCAACCGTTGACAAGCTTGTCATTGATTTGATCTGTGAGGGCCAACAGCCGTTCTCTGCGGTCAAACAACCAGCTTTTAAAGAGTTGGTAACCACCCTGCATCCTCAATGCAAAGTAATCTCCAGACCTACTGTTCGTTCAAGAATAAATGAAGCAGCCAATCACACGAAGAAGACCGTTAGGGTACATTATGTTGCCACCACCACTGATTGGACAGCTCATCAAAGGAGTTACATAGGGGTCACTTGATAGATTAAGAAACTGACGTTCTGCTGCACTCGCTTGCAGGAGATTGAGAGGTTCCCACACAGGTGATGTGCTTGCAGGTGTCCTCGACGACATCCATTATGCATACAGGATCAGGGGAAAAGTAGTAAGAACCACAACAGACAGTGGATCAAACTTCATCAaagcattcaatgttttttttgggtGAGCAGAGCCAGGCAGTCGAGTCAGCAGACCGAGACACAGATGCTGAAGAGCCAGCAGAGCAGGTTGAATGCTAAGACACCTATTCCATCCTGGAAAATGACAGTGGCCTAGAATAATCAACTCCCTCAGCATCAACGGTGTGCATGTCACCTGCTGAAGCTAATTGCAACAGATTCTGCGCTGGCAGAAACACAGTGATGGCTACAAAAGGTTGTCCAGAGCATCTTTTGCCAAATGCCATGTGGAGTAAAACAGGACGGTCAACCTTAGCTGCTGAAGTTGTAGAGAATGAGTGCAAACTGCAGTTGATCCGTCCAAATCTAAACAAGTTGGAACTCAACTTACCTGACTGTGGAGAGGATCACACATATCATACAAGAGAAGGGGGAGGATACCATAAGAAAGGTGTGACAAGAATTAACTGAAAATGGATGAGCCCGGCAGAAATGTCCTTCTTGAATGAGTACTGCAAAGTGATGAAGCCTTTGGTCTCAGCTTTGAACATTTTACAGTCTGAGACCAACATGCATATGGGGTGGCTGCTACCAGTGATCCGCTTACTAAAATCAAAACTTCAAGAGGTCGGGAAGCATCTTGCCAAATGTGCCTACCACTTATCAGAGCCATTCAGAGAGAAGTGATGTGAGTTAAGTGTTCGATAGGTTGTTCCACAAATAATATGGCTTTTGAACATTTTGTATATGTGAAGTTGAAGATTTAATATTAAAATCAGCTGTGGTGGATCTTA
>TU396283
gaggagacagtaaCTATGGAATGTAAAGATGGTGGAGGTGGCTGCCTACAAAAACTCTGCTTCAAATTTTAGGAAACATGTAATGGTACAAAAAGTAAATgtgtaaatatgtatatattttttaaagtaaagttgtaaatgtattttattgcCATGAATGGCGTTTGTTGTGTAGGCTATGTAGCCAGTTTCATTCAATCTGTAGCgtaatgctaacgttagctagctcatcCTGTTGCTAGCTAGTTAGACGCTAACCCTGACCAATGTCTTAACACAGCTGAAGGAACTTTTGCCTGTAGTGCGGGCTACTACCTCATTGACATTATGGTGGCTAGTAGTTAGCCATCCCCATAATTTAAATTGTTGGGGATAGCTAAAAGTGAAATTAAGGAACTTGTttagataaaataaataattttgaGACCTGGGATTTTTAGAGGAAACATCCATTAAAGATGACAAACTACAATATGCTCACCTTTGCAACCACAAACAAAAGAACCAAGGAACTATCAAACACCTCTTCAACTTGCAAAGATATCTGAAATGGCAGTGGGAGGAGCCAGGTGCGTCTCACAAGCAACCGTTGACAAGCTTGTCATTGATTTGATCTGTGAGGGCCAACAGCCGTTCTCTGCGGTCAAACAACCAGCTTTTAAAGAGTTGGTAACCACCCTGCATCCTCAATGCAAAGTAATCTCCAGACCTACTGTTCGTTCAAGAATAAATGAAGCAGCCAATCACACGAAGAAGACCGTTAGGGTACATTATGTTGCCACCACCACTGATTGGACAGCTCATCAAAGGAGTTACATAGGGGTCACTTGATAGATTAAGAAACTGACGTTCTGCTGCACTCGCTTGCAGGAGATTGAGAGGTTCCCACACAGGTGATGTGCTTGCAGGTGTCCTCGACGACATCCATTATGCATACAGGATCAGGGGAAAAGTAGTAAGAACCACAACAGACAGTGGATCAAACTTCATCAaagcattcaatgttttttttgggtGAGCAGAGCCAGGCAGTCGAGTCAGCAGACCGAGACACAGATGCTGAAGAGCCAGCAGAGCAGGTTGAATGCTAAGACACCTATTCCATCCTGGAAAATGACAGTGGCCTAGAATAATCAACTCCCTCAGCATCAACGGTGTGCATGTCACCTGCTGAAGCTAATTGCAACAGATTCTGCGCTGGCAGAAACACAGTGATGGCTACAAAAGGTTGTCCAGAGCATCTTTTGCCAAATGCCATGTGGAGTAAAACAGGACGGTCAACCTTAGCTGCTGAAGTTGTAGAGAATGAGTGCAAACTGCAGTTGATCCGTCCAAATCTAAACAAGTTGGAACTCAACTTACCTGACTGTGGAGAGGATCACACATATCATACAAGAGAAGGGGGAGGATACCATAAGAAAGGTGTGACAAGAATTAACTGAAAATGGATGAGCCCGGCAGAAATGTCCTTCTTGAATGAGTACTGCAAAGTGATGAAGCCTTTGGTCTCAGCTTTGAACATTTTACAGTCTGAGACCAACATGCATATGGGGTGGCTGCTACCAGTGATCCGCTTACTAAAATCAAAACTTCAAGAGGTCGGGAAGCATCTTGCCAAATGTGCCTACCACTTATCAGAGCCATTCAGAGAGAAGTGATGTGAGTTAAGTGTTCGATAGGTTGTTCCACAAATAATATGGCTTTTGAACATTTTGTATATGTGAAGTTGAAGATTTAATATTAAAATCA

Function

NR:

description
PREDICTED: uncharacterized protein LOC109086182

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473345.2 False 2092 mRNA 0.42 3 38817900 38820524
TU396283 True 1749 lncRNA 0.42 3 38818227 38820508

Neighbor

gene id symbol gene type direction distance location
thbs1b LOC106608163 coding upstream 166838 38626216 ~ 38651062 (+)
LOC110522580 LOC106608254 coding upstream 526362 38288197 ~ 38291538 (+)
LOC110521100 LOC106608253 coding upstream 583222 37969722 ~ 38234678 (+)
LOC110522584 LOC106608258 coding upstream 918692 37897636 ~ 37899208 (+)
LOC110521098 LOC106608260 coding upstream 920376 37879402 ~ 37897524 (+)
LOC118964474 LOC106608159 coding downstream 5259 38825783 ~ 38885772 (+)
LOC110522591 LOC105024333 coding downstream 69790 38890314 ~ 38897681 (+)
LOC118964476 NA coding downstream 78880 38898435 ~ 38900534 (+)
LOC110522592 LOC106608157 coding downstream 100814 38921338 ~ 38942012 (+)
LOC110521104 LOC106608154 coding downstream 140011 38960535 ~ 38994558 (+)
G350210 NA non-coding upstream 512 38816347 ~ 38817388 (+)
G350206 NA non-coding upstream 8531 38808930 ~ 38809369 (+)
G350232 NA non-coding upstream 11670 38805720 ~ 38806230 (+)
G350225 NA non-coding upstream 34998 38781874 ~ 38782902 (+)
G350221 NA non-coding upstream 50520 38767164 ~ 38767380 (+)
G350244 NA non-coding downstream 41949 38862473 ~ 38862866 (+)
G350249 NA non-coding downstream 50185 38870709 ~ 38870993 (+)
G350253 NA non-coding downstream 60152 38880676 ~ 38882424 (+)
G350208 NA non-coding downstream 80584 38901108 ~ 38901586 (+)
G349877 NA other upstream 383876 38432179 ~ 38434024 (+)
G349855 NA other upstream 412436 38404645 ~ 38405464 (+)
LOC110522576 LOC106608246 other upstream 1320894 37445368 ~ 37501952 (+)
G348133 NA other upstream 1656777 37160094 ~ 37161123 (+)
LOC110522562 LOC105017690 other upstream 2744944 36039096 ~ 36123362 (+)
G350211 NA other downstream 83206 38903730 ~ 38904774 (+)
G350665 NA other downstream 567617 39388141 ~ 39389474 (+)
G351441 NA other downstream 1314163 40134687 ~ 40136773 (+)
G352136 LOC106608303 other downstream 2169635 40990159 ~ 40990505 (+)

Expression


Co-expression Network