LOC110521104 (LOC106608154)


Basic Information

Item Value
gene id LOC110521104
gene name LOC106608154
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 38960535 ~ 38994558 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976243.1
GTGATGTCAAGTGAAAAGCGGATGCTGCTGGGAGCTTCCCCCGCCACCGCACCCATCAGAGGAGGAGTGGGCTGGGTGGAATCCCTTCTCTTATACCTAGGCTTTGTTACCAAAGAGACCGCTCCTCTTGGTTTGATAGACAGAGCTGCTCGCCGGTTCCTCGAAAGACGATCAAAAGACTTGATTGCATTTTGGGCAGACATGGGCTGGGGTGTAGCTGTGTTGCTTTTGGTAATTCGTTGCTGAGTTAGCTTTGCTGGCTGTTCTAATTTCTAACACGCTATGGCTAAGCAGTATGATGTGCTCTTCCGACTCCTGCTTCTCGGAGATTCGGGGGTCGGAAAAACATGTTTATTATGCAGATTCACGGACAACGAATTTCACCCGTCTCACATTTCCACAATCGGAGTCGATTTCAAAATGAAGACGCTAGAGATAGACGGCATCAAAGTGAGGATACAGATTTGGGACACAGCAGGACAGGAGAGATATCAGACCATCACTAAGCAGTACTACAGACGAGCACAGgGAATCTTCCTGGTTTACGACATCACAAGTGAGCGATCCTTCCAGCACATCATGAAGTGGGCCAGCGATGTGGACGAGtatgCCCCTGATAACATCCAGAGGATCCTCATAGGGAACAAGTCAgacgaggaggagaagagacaggttGCTACAGGACAGGGCAACAAGCTGGCCAAGGATTATGGGATGGACTTCTTTGAGACAAGTGCCTCCACCAACTATAACATCACAGAGTCCTTCACACGATTGGCTGAGCAGGTCCTGGCAGCCAATAAGAAGGACCTGGACCTCCTAAGGGCGTCGGTCACAGACGAGCTCAACCTCGCCgccctggaggaggaggagggcatcACAGACGGGGCCGCCGCCTCACAGAAGGGCTGCTGGTGTTAAGGgctgggcctggtcaaaagtagtgcactatgtagggaatagggtgaaaaaagtagtgccctatgtagggaatagggtgaaaaaagtagtgccctatgtagggaatagggtgaaaaaagtagtgcccta

Function

NR:

description
PREDICTED: ras-related protein Rab-15-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07908 RAB15; Ras-related protein Rab-15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976243.1 True 1050 mRNA 0.51 6 38960535 38994558

Neighbor

gene id symbol gene type direction distance location
LOC110522592 LOC106608157 coding upstream 18523 38921338 ~ 38942012 (+)
LOC118964476 NA coding upstream 60659 38898435 ~ 38900534 (+)
LOC110522591 LOC105024333 coding upstream 62854 38890314 ~ 38897681 (+)
LOC118964474 LOC106608159 coding upstream 74763 38825783 ~ 38885772 (+)
LOC110522590 NA coding upstream 140011 38817900 ~ 38820524 (+)
LOC118964477 NA coding downstream 127 38994685 ~ 38995753 (+)
LOC110521105 LOC106571085 coding downstream 40836 39035394 ~ 39190157 (+)
LOC118964499 NA coding downstream 118165 39112723 ~ 39113347 (+)
rgs6 LOC106571069 coding downstream 228153 39222711 ~ 39384500 (+)
pigh pigh coding downstream 478750 39473308 ~ 39478404 (+)
G350266 NA non-coding upstream 20219 38939013 ~ 38940316 (+)
G350260 NA non-coding upstream 48455 38911852 ~ 38912080 (+)
G350255 NA non-coding upstream 55345 38904969 ~ 38905190 (+)
G350208 NA non-coding upstream 58949 38901108 ~ 38901586 (+)
G350392 NA non-coding downstream 3275 38997833 ~ 38998312 (+)
G350399 NA non-coding downstream 14006 39008564 ~ 39011033 (+)
G350400 NA non-coding downstream 14358 39008916 ~ 39010648 (+)
G350402 NA non-coding downstream 18684 39013242 ~ 39013443 (+)
G350407 NA non-coding downstream 21591 39016149 ~ 39016374 (+)
G350211 NA other upstream 55761 38903730 ~ 38904774 (+)
G349877 NA other upstream 526511 38432179 ~ 38434024 (+)
G349855 NA other upstream 555071 38404645 ~ 38405464 (+)
LOC110522576 LOC106608246 other upstream 1463529 37445368 ~ 37501952 (+)
G350665 NA other downstream 393583 39388141 ~ 39389474 (+)
G351441 NA other downstream 1140129 40134687 ~ 40136773 (+)
G352136 LOC106608303 other downstream 1995601 40990159 ~ 40990505 (+)
G352340 NA other downstream 2215689 41210247 ~ 41210998 (+)
G352341 NA other downstream 2216555 41211113 ~ 41214206 (+)

Expression


Co-expression Network