LOC118964477


Basic Information

Item Value
gene id LOC118964477
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 38994685 ~ 38995753 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051534.1
ATGcccaatgtagggaatagggtgtcacttcttatgtaaagactgggtctggatGTGTCTCAaaacacaccctattccctatgcgagatctggtttaaagtagtgcactttgtagggaataaggtggagGGTGACACTTCTCTTCTTCATGTTAGAACCTGATTAACGTAGCCGATTGCCTTTCTACCATCATAGGTGGTGTACTGGCATTTGATaggttttttaaaattgtatttttcattGTAGTTGTTAGGTTTTGCCACAAGAGGGTGCTGCTGATACATGCTGCATTATATACAAAGCTTTCAGTATTTAGAGTACACCGCAGGGCTGTTGATAAAGTGGGCACGACCCATTTacactgttccctttatagtacactgcTCGGCTAAACTCAGACCTACTGCACCATAGGGAATACACTGTTTGTGACTAGCAACGGACCAGCGAGAGATCTGCGTGCGTCCACACTTCGAGCCTCATATTTTTATTTTCTTGCAACTTCAATGAAGTTAATTATTCAACTGGTCATTTATTAAACACTTAATTTAGCATTTGACCAGAGTGGTCTGACGTTATTATTCTTAACCTGGCCTATTCTCTCTACGACTGACACAATGTTAATAGTGCTACCATCAACCAAAACTCATGTTTAtgtgtgcaagtgataatatggTATGTAGTATTGAATGAAATGCTGGACTATGATTTCTAGATACAGATGAAATGTATGTCTGTTTTGTttggtgatgggggggggggcggggagtACGTTTTGAATTGCATTTGGTGGATATATATAACGTGCAACATTGTACTTATTTCACGTGTTTATTGAATAAATGCTTGAAGATGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051534.1 True 857 mRNA 0.40 2 38994685 38995753

Neighbor

gene id symbol gene type direction distance location
LOC110521104 LOC106608154 coding upstream 127 38960535 ~ 38994558 (+)
LOC110522592 LOC106608157 coding upstream 52673 38921338 ~ 38942012 (+)
LOC118964476 NA coding upstream 94809 38898435 ~ 38900534 (+)
LOC110522591 LOC105024333 coding upstream 97004 38890314 ~ 38897681 (+)
LOC118964474 LOC106608159 coding upstream 108913 38825783 ~ 38885772 (+)
LOC110521105 LOC106571085 coding downstream 39641 39035394 ~ 39190157 (+)
LOC118964499 NA coding downstream 116970 39112723 ~ 39113347 (+)
rgs6 LOC106571069 coding downstream 226958 39222711 ~ 39384500 (+)
pigh pigh coding downstream 477555 39473308 ~ 39478404 (+)
vps18 LOC106608270 coding downstream 532674 39528427 ~ 39562620 (+)
G350270 NA non-coding upstream 966 38955573 ~ 38993719 (+)
G350288 NA non-coding upstream 3724 38986829 ~ 38990961 (+)
G350266 NA non-coding upstream 54369 38939013 ~ 38940316 (+)
G350260 NA non-coding upstream 82605 38911852 ~ 38912080 (+)
G350255 NA non-coding upstream 89495 38904969 ~ 38905190 (+)
G350392 NA non-coding downstream 2080 38997833 ~ 38998312 (+)
G350399 NA non-coding downstream 12811 39008564 ~ 39011033 (+)
G350400 NA non-coding downstream 13163 39008916 ~ 39010648 (+)
G350402 NA non-coding downstream 17489 39013242 ~ 39013443 (+)
G350407 NA non-coding downstream 20396 39016149 ~ 39016374 (+)
G350211 NA other upstream 89911 38903730 ~ 38904774 (+)
G349877 NA other upstream 560661 38432179 ~ 38434024 (+)
G349855 NA other upstream 589221 38404645 ~ 38405464 (+)
LOC110522576 LOC106608246 other upstream 1497679 37445368 ~ 37501952 (+)
G350665 NA other downstream 392388 39388141 ~ 39389474 (+)
G351441 NA other downstream 1138934 40134687 ~ 40136773 (+)
G352136 LOC106608303 other downstream 1994406 40990159 ~ 40990505 (+)
G352340 NA other downstream 2214494 41210247 ~ 41210998 (+)
G352341 NA other downstream 2215360 41211113 ~ 41214206 (+)

Expression


Co-expression Network