vps18 (LOC106608270)


Basic Information

Item Value
gene id vps18
gene name LOC106608270
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 39528427 ~ 39562620 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976263.1
GTGCCAAGATCACCTGACTACACACGGGTCCTTTCCCTTTTTTTGTGCGTTTGGAAGTTTTCGGGGAAGTTGCACACAATTAGCATGTTTTGACAGTTTTTTATATGGCTAAGATAATGCCGTTTTCTATCATGTAGAGTACGCTTCAGTTCTGAATCCTTTCTGACGAGACGCACGCAACAGAATGGGCTCTTTGTAGACTCCAGAAATCTAGCGGTACCTTGTTAGCTCATAGCCAGTCATTATGCCACCGCATGATCCGACCTTGTAGCAGTTAGCTGTTAGTTAGTTCCTCTGCTGTAGATCACCGCTACGTTTTGCAATGTCTTCTATCCTGGATGAATACGAAGACTCGCAGAACAGCAGGCACCCTGTGCAACATAGTAGCCGTCTGTCTGCTGCCAACATCGGCATAACGCATTCAGGGTTTGTGAATGTGAGACTCGAAGAGGAGAAGCCGATATTCAACAAACAGAGGATTGATTTCTCACCCCCGGAGAAGATCAACCACTTTGCTGTCTGTAACAATCAGCTATGCATGAGTTTAGGGAAGGACACTCTCCTGAGGATTGACCTTGCCAAGCCAGACCAGCCCAACCAGATAGAACTGGGGAGGAAGGATGACAGCAGAGTACACAAGCTCTTCCTGGACCCCACAGGGTCCCACCTGGTGATTTCTCTCAGTACCAGCGAGTGTCTGTATCTGAACAGGAACACCCAGAAGGTGAGGTCTCTGTCCCGCTGGAGAGGGCACCTCATAGAGAGTGTAGGCTGGAACAAGCTGCTGGGGACAGAGACCAACACTGGGCCCATCCTAGTGGGAACCAGCCAGGGAATCATCTTCGAGGCTGAGATCTCTGCTTCAGAGGGAAGCCTGTTTAACACCAACCCTGACCAGTACTTCAAacagGTCCACTCCCTGGAGGAGGACGGGAAGCCTGCTCCTGTATGCTgtatagaggtggagagaggtccGGAGTCTAAAGTCGTCATCATCGCCACCACCAGGAAGCGTCTGTTCCAGTTCGTAGGTCGTGTGGCGGAGGGGTCCGAGCAGCAAGGCTTCAGCTCCGTCTTCTCTCAGAACCAGGAGCTGCTGCCCAGCTTCCAGGAGTTTCCGTTTAACATGGGCTACAGTGAGATCACCTTCTACACCTCCAAGCTCAGGTCCTGCCCCAAGGCCTTCGCATGGATGATGGGTAATGGAGTTCTCTACGGTCAGCTGGACTACATCAGGCCGGACTCGGTGCTCAGTGATGTGCAGgtGTGGGATTATACCCCAGACATAGACTTCAGTTTCAACAAGCCCATCTCTATCGTGTTGACTCAGTTCCACTTTCTACTCCTCCTCCCTGACCGCGTCAAGGCCATCTGCACCCTCAACGGACAGgtgGTGTACGAGGATGTGTTTCCTGATAAGTTCGGCACTCTGAAGAAGATGATCAAAGACCTAGCAGGAGGCCTGGTGTGGATCTATACTGAGAAGGCTGTCTTCAGATACCACATCCAGAGAGAAGCCAGGGATGTGTGGCAGATGTACATGAGCATGAACAAGTTTGACCTGGCTAAGGAGTACTGCCGGGACCGGCCAGAGTGCATGGACATGGTCCTGGCTAAGGAGGCAGAACACTGCTTCCAGAACAAACGCTACTTGGAGAGCGCTAAATGCTACGCTCTGACCCAGAACTACTTCGAAGAGATTGCTTTGAAGTTTATCGAGGCAAAACAGGACGAGGCTCTGAAAGAGTTCCTGCTGAAGAAACTCAATAATTTAAAACAGAGTGAGAAGACCCAGATCACCCTACTGGTCACTTGGCTGACTGAGCTTTACCTGAACCACCTGGGGCTTCTAGAATCAGACGAGGGGAAACATGGGGTGTTCCAGGAGACGCGTGATGAGTTCCGGAAGTTCCTCAGTAGTTCCAAACACAAGGAGTGTCTCTATAACAACCGAACGACCATCTATGACCTGCTGGCTAGCCACGGCAACGTGGACGACATGGTCTACTTCTCTGTCATCATGCAGGACTATGAGAGGGTGATCTCCCACCACTGTCAGCATGATGACTATAGCGCCGCCCTGGAGGTGCTCTCGAAGCACTGCGACGAGAAGCTCTTCTATAAGTTCTCCCCCATCCTCATGCAACACATACCTAAGAAGGTGGTGGACGCCTGGATCCAGATGGGTTCCAGGCTGGAACCTAAGAAGCTGATCCCAGCCCTGGTCAACTACAGTCAGATGGGTTCAACACAACAGGTCAACGAGACCATCCGGTACATGGAGTTCTGTGTCTACCAGCTCACTGTGACAGAAGAGGCCATACACAACTACCTGCTGTCCCTCTACGCCAAGTACAAACCTGATAGTCTGTTGTGGTACCTGGAACAGGCTGGTACCCACGCGTCATACATCCACTATGACTTAAAGTACACGCTGAGGCTGTGTGCTGAACATGGTTACCTCCAGGCCTGCGTTCTGGTCTATAAGATCATGGAGCTGTATGAGGAAGCTGTCGATCTGGCCCTACAAGTGGATGTGGACCTGGCCAAGTCATGTGCTGACCTGCCTGAGGATGACGAGGAGTTGAGGAAGAAGTTGTGGCTGAAGATCGCTCGTCACGTGGTGCAAGAGGAGAAGGATGTGAAGAAGGCCATGAACTGTCTGTCCAGCTGTAACCTGCTCAAGATCGAAGACATACTGCCCTTCTTCCCGGACTTCGTCACCATAGACCACTTCAAGGAGGCTATCTGCAGCTCTTTACAGGAGTACAACCAGCATATAGACGAGCTGAAGCAGGAGATGgaggaggcgacggagagcgccaAGCGGATCCGAGAGGACATCCAGGAGATGAGGAACAAGTACGGGGTGGTGGAGAACCAGGAGAAATGTGCTGCCTGTGACTTCCCCCTCCTCAACAGACCCTTCTATCTGTTCCTCTGTGGTCACATGTTCCACTACGACTGCCTCTTCCTGGAGGTGACCCCTCACCTGTCCACCTACAAGCAGACTAAACTAGGTGAGCTGCAGAAGAAGTTGGCTGCAGCCACTCAGACCTCCAAGTCTCGCCACCGCCCTGCCCCcaaggagaaggaggaagggggCGACACCGCCAGCCTGGGCAAAGAGAATGCTGGAGTCAGCCGTGAGCAAATCAAGTCAGACATCGATGACATCATCGCGTTTGAATGCGTGTACTGCGGCGAGCTGATGATCAAGTCGATCGACAAGCCGTTTATTGATCCACAGAAGTTGGAGGAGGAGAAGTCCAGCTGGCTCTGAGTTAAATGGTTGGCAGCTTGGAGCTGAAATGAGCTAGGTCTGAAATGGACTGCCTGATATGAGGTGGGAAAATTTGACTGAAGAAGATCTGAAATTAGTGAAATGTGCTTTAACTGTCTGAACCGATGAGAGGTGAAATAGACTTGTCTGAAATGACTGAAATGCGCAGCGTGTGTTGTCTGAAATGGAACCGACCAGTGTGTACACTGTAGGCCAGAAAATCAGCTGTTATTCTCCTTTGATAATGGGATGTACAGCCACAGCTGCACAGTGCCGGGCGATGGATACTCACAGGAGTGGGGAAGAATGCAGGCGCTCCTATATAAGCCCTATAAGTGTCTCTGTAACATGATATATTCTACAGACTCTCTCTCTGCGAAGCTTAGAAAAACTGCCACTATGTCGGGATCACACACCTTGGGTTTATTAAGCATTACAAGATCGGTTCACTATCTTTTACACTCATCTGTCTAAATTAACAAATTAACTTGTGAAATGTTCTCTGAAATGGAATGCATATTTATACATCTTCACTGGTATTAGTTAGTTCCACTGGCTATTGACATGAATAGTACTATAAAAAGGTATGTAAAGAACTACAGTTTTTGTTATTAgtttcctttatgacatcatgAGAACTTTCTTCACACCTGTTTCATTGGCTGGCAGTTTATTATGTTGTGACATCTGAGATCAGGTCAATGTAACCCACTTTTGGTTTGCAAAATGCACCTATGAAAATTAAACGAATCTTTAATTCTG

Function

NR:

description
vacuolar protein sorting-associated protein 18 homolog

GO: NA

KEGG:

id description
K20181 VPS18, PEP3; vacuolar protein sorting-associated protein 18

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976263.1 True 4045 mRNA 0.50 16 39528427 39562620

Neighbor

gene id symbol gene type direction distance location
pigh pigh coding upstream 50023 39473308 ~ 39478404 (+)
rgs6 LOC106571069 coding upstream 143927 39222711 ~ 39384500 (+)
LOC110521105 LOC106571085 coding upstream 341563 39035394 ~ 39190157 (+)
LOC118964499 NA coding upstream 415080 39112723 ~ 39113347 (+)
LOC118964477 NA coding upstream 532674 38994685 ~ 38995753 (+)
ino80 ino80 coding downstream 959 39563579 ~ 39651706 (+)
syndig1l LOC106608262 coding downstream 619757 40182377 ~ 40268661 (+)
LOC118964479 NA coding downstream 749018 40311638 ~ 40312681 (+)
LOC118936457 NA coding downstream 816914 40379534 ~ 40386303 (+)
LOC110522596 LOC106591683 coding downstream 829030 40391650 ~ 40437808 (+)
G350733 LOC106608271 non-coding upstream 2464 39523399 ~ 39525963 (+)
G350708 NA non-coding upstream 52739 39475199 ~ 39475688 (+)
G350688 NA non-coding upstream 85753 39442438 ~ 39442674 (+)
G350674 NA non-coding upstream 116338 39411829 ~ 39412089 (+)
G350664 NA non-coding upstream 137041 39389603 ~ 39391386 (+)
G350744 NA non-coding downstream 4335 39566955 ~ 39567609 (+)
G350763 NA non-coding downstream 62289 39624909 ~ 39625349 (+)
G350783 NA non-coding downstream 95843 39658463 ~ 39658882 (+)
G350788 NA non-coding downstream 99053 39661673 ~ 39661953 (+)
G350665 NA other upstream 138953 39388141 ~ 39389474 (+)
G350211 NA other upstream 623653 38903730 ~ 38904774 (+)
LOC110522591 LOC105024333 other upstream 630771 38890314 ~ 38897681 (+)
G349877 NA other upstream 1094403 38432179 ~ 38434024 (+)
G349855 NA other upstream 1122963 38404645 ~ 38405464 (+)
G351441 NA other downstream 572067 40134687 ~ 40136773 (+)
G352136 LOC106608303 other downstream 1427539 40990159 ~ 40990505 (+)
G352340 NA other downstream 1647627 41210247 ~ 41210998 (+)
G352341 NA other downstream 1648493 41211113 ~ 41214206 (+)
G352477 NA other downstream 1803581 41366201 ~ 41366607 (+)

Expression


Co-expression Network