LOC118936457


Basic Information

Item Value
gene id LOC118936457
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 40379534 ~ 40386303 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976308.1
CCCACCCATTCCAGATTGAGCCAATTGCAAAGATTTGTTTTGTACCCTATGGGGGAAGCCAACATACACTGCAAGGGGAAATAGATGTCAGAAATGCAGTGCTTTATCACTGTAAGCTATCTGTCCAGAACCAGATTTGCTTGCAATGCACATGATTGTATTATCAAATCATACAAGTGGACTTCTGGTGACGATTATGGGCATCCTGCCTGCACTGGAGCTGAACCAACTGGATCCCAAACAAGTGTGGTGTCTGGTCCAAATGCTAAAGCTACTGGCCACAATAGCCTGGCAAGTGTGACGCAGGGTCCAAATGCCACAGCTGAAGCAACTACCAACCATGCCTCTGCAGAAGCGGCTGGCCCCCGCGCCTCAGCTGAAGCAACTGCCAACCATACCTCTGCAGAAGCGGCCCACGGCTCAGCTGAATCAACTGCCAACCATGCCTCGGCAGAAGCCAATGGTCCCCACTCCTCAGCTGAAGCAACTGCCAACCATACCCCTGCAGAAGCGGCCGCCGGCCTTCGCGTCTCTGCAGAAGCGAAGGCCGGCCTTGAACAGAGACGGCCCGACCCCTCGACAAGCTAGATAGGGAGATCATAATTTGGTTAGCCCAACTCCTTAAATCGTCTTTCCCCTGTTACTGTGCCTCCATTTGAAGAAAAGGGCAAAGGTAACTGGAATTGTGCAAACTAATGCACTTGTTTGAAATAAGGATCTCCTTCACTTGTGCATCGTCATGCAAATTGTTTACAGGGGTGAACACTACAATGGTATGCATTGTTTTCAAAACCATACGACTAAAATTGACATCTGATTGGGCCACTATTGCTGACACTAAGGTTGTACGGTTATGATTTTGATTTGTCCTGGTGTTCCTGCTACTCTTGCATGATTTGTTCAATAAACTATTTGACTTCCA

Function

NR:

description
coiled-coil domain-containing protein 8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976308.1 True 922 mRNA 0.48 2 40379534 40386303

Neighbor

gene id symbol gene type direction distance location
LOC118964479 NA coding upstream 66853 40311638 ~ 40312681 (+)
syndig1l LOC106608262 coding upstream 113845 40182377 ~ 40268661 (+)
ino80 ino80 coding upstream 727828 39563579 ~ 39651706 (+)
vps18 LOC106608270 coding upstream 816914 39528427 ~ 39562620 (+)
pigh pigh coding upstream 901130 39473308 ~ 39478404 (+)
LOC110522596 LOC106591683 coding downstream 5347 40391650 ~ 40437808 (+)
stmn4 LOC106608277 coding downstream 193383 40579686 ~ 40597389 (+)
paqr8 paqr8 coding downstream 240090 40626393 ~ 40630821 (+)
LOC110521109 LOC106608311 coding downstream 264351 40650654 ~ 40674839 (+)
LOC110522626 LOC106608310 coding downstream 322359 40708662 ~ 40714024 (+)
G351643 NA non-coding upstream 5616 40359939 ~ 40373918 (+)
G351466 NA non-coding upstream 109787 40233300 ~ 40269747 (+)
G351477 NA non-coding upstream 181883 40197198 ~ 40197651 (+)
G351451 NA non-coding upstream 227707 40151448 ~ 40151827 (+)
G351739 NA non-coding downstream 79509 40465812 ~ 40466209 (+)
G351771 NA non-coding downstream 114621 40500924 ~ 40501156 (+)
G351773 NA non-coding downstream 115929 40502232 ~ 40502684 (+)
G351786 NA non-coding downstream 127415 40513718 ~ 40514109 (+)
G351789 NA non-coding downstream 211309 40597612 ~ 40598001 (+)
G351441 NA other upstream 242761 40134687 ~ 40136773 (+)
G350665 NA other upstream 990060 39388141 ~ 39389474 (+)
G350211 NA other upstream 1474760 38903730 ~ 38904774 (+)
LOC110522591 LOC105024333 other upstream 1481878 38890314 ~ 38897681 (+)
G349877 NA other upstream 1945510 38432179 ~ 38434024 (+)
G352136 LOC106608303 other downstream 603856 40990159 ~ 40990505 (+)
G352340 NA other downstream 823944 41210247 ~ 41210998 (+)
G352341 NA other downstream 824810 41211113 ~ 41214206 (+)
G352477 NA other downstream 979898 41366201 ~ 41366607 (+)
G353125 NA other downstream 1738373 42124676 ~ 42125759 (+)

Expression


Co-expression Network