G350665


Basic Information

Item Value
gene id G350665
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 39388141 ~ 39389474 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU396860
AGTACCCAAAACGGACACAGTATGATATCCATATAAAATCGATGGTCTCCGAACTAAAACAAAATTATATTGACACATATATTTCTTGGAGTGGGAAGTTGGCATGGTGATATAAACAGGAAGACATGTTGTTAAAATGTCTGACATGAGGGGGGAAGAATAAGGAAAACATTAAAATGTTATTGACATCATGGATGCATCTCAAATGGTACACTTCCTTAAATACATTACCGGGCAAAACCTTTAGAaaacctactcattaaagggtttttctttattt
>TU396861
AGTACCCAAAACGGACACAGTATGATATCCATATAAAATCGATGGTCTCCGAACTAAAACAAAATTATATTGACACATATATTTCTTGGAGTGGGAAGTTGGCATGGTGATATAAACAGGAAGACATGTTGTTAAAATGTCTGACATGAGGGGGGAAGAATAAGGAAAACATTAAAATGTTATTGACATCATGGATGCATCTCAAATGGTACACTTCCTTAAATACATTACCGGGCAAAACCTTTAGAaaacctactcattaaagggtttttctttattttttactattttctacattgtataataatattgaagacatcaaaacgatgtaataacacgtatggaatcatgtagtaaccaaaaaagtgttaaacaaataaaaatacataatacaaatacagattcttcaaatagccaccgtttgctttgatgacagctttgtacactcttggcattctctcaaccagcttcatgagatagtcacctggaatgcatttaaatgtgacaaggtagggctggtatacagaagatagccctatttggtaaaagaccaagtccattttatggcaagaacagctcaaataagtaaaagagaaatgacagtccatcattagtttaagacatgaaggtcagtcaatatggaacatttcaagaactttgaaagtttattcaagtgcagttgcaaaaaccatcaagcgctatgatgaaactggctatacagttgaaatgtgtcctttggtctggtgtccaaattggagatttttggttccaaccgctgtgtctttgtgagacgcggtgtgggggaacagatgatctccgcatgtgtatttcccaccgtgaagcatggaggaggaggtgttaatggtgtgggggtgctttgctggtgacactgtctgtgatttatttagaattcaaggcacacttaaccagcatggctaccacagcattctgcagcgatgtgccatcccatctggtttgggctttgtgggactatcacttgtttttcaacggaacaatgacccaacacacctccatgctgtgtaagagctatttgaccaagatggagagtgatggagtgcagcatcagatgacctggcctccacaatcccccgacctcaaccaaattgagatggtttggcatgttggactgcagagtgaaggaaaagcagccaacaagtgctcagcatatgtgggaactccttcaagacagttggaaaagcattccaggtgaagctggttgagagaatgccaagagtgtgcaaagctgtcgtcaaggcaaagggtggctatttgaa
>TU396863
ttggcattctctcaaccagcttcatgagatagtcacctggaatgcatttaaatgtgacaaggtagggctggtatacagaagatagccctatttggtaaaagaccaagtccattttatggcaagaacagctcaaataagtaaaagagaaatgacagtccatcattagtttaagacatgaaggtcagtcaatatggaacatttcaagaactttgaaagtttattcaagtgcagttgcaaaaaccatcaagcgctatgatgaaactggctatacagttgaaatgtgtcctttggtctggtgtccaaattggagatttttggttccaaccgctgtgtctttgtgagacgcggtgtgggggaacagatgatctccgcatgtgtatttcccaccgtgaagcatggaggaggaggtgttaatggtgtgggggtgctttgctggtgacactgtctgtgatttatttagaattcaaggcacacttaaccagcatggctaccacagcattctgcagcgatgtgccatcccatctggtttgggctttgtgggactatcacttgtttttcaacggaacaatgacccaacacacctccatgctgtgtaagagctatttgaccaagatggagagtgatggagtgcagcatcagatgacctggcctccacaatcccccgacctcaaccaaattgagatggtttggcatgttggactgcagagtgaaggaaaagcagccaacaagtgctcagcatatgtgggaactccttcaagacagttggaaaagcattccaggtgaagctggttgagagaatgccaagagtgtgcaaagctgtcgtcaaggcaaagggtggctatttgaagattctcaaaaacaaaatatattttgatttgtttaacac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU396860 False 280 lncRNA 0.34 1 39388141 39388420
TU396861 False 1295 TUCP 0.41 1 39388141 39389435
TU396863 True 886 TUCP 0.44 1 39388589 39389474

Neighbor

gene id symbol gene type direction distance location
rgs6 LOC106571069 coding upstream 3641 39222711 ~ 39384500 (+)
LOC110521105 LOC106571085 coding upstream 201277 39035394 ~ 39190157 (+)
LOC118964499 NA coding upstream 274794 39112723 ~ 39113347 (+)
LOC118964477 NA coding upstream 392388 38994685 ~ 38995753 (+)
LOC110521104 LOC106608154 coding upstream 393583 38960535 ~ 38994558 (+)
pigh pigh coding downstream 84888 39473308 ~ 39478404 (+)
vps18 LOC106608270 coding downstream 140007 39528427 ~ 39562620 (+)
ino80 ino80 coding downstream 175159 39563579 ~ 39651706 (+)
syndig1l LOC106608262 coding downstream 793957 40182377 ~ 40268661 (+)
LOC118964479 NA coding downstream 923218 40311638 ~ 40312681 (+)
G350594 NA non-coding upstream 172778 39214912 ~ 39215363 (+)
G350586 NA non-coding upstream 187663 39200079 ~ 39200478 (+)
G350585 NA non-coding upstream 195499 39192388 ~ 39192642 (+)
G350505 NA non-coding upstream 215201 39172553 ~ 39172940 (+)
G350664 NA non-coding downstream 1183 39389603 ~ 39391386 (+)
G350674 NA non-coding downstream 23409 39411829 ~ 39412089 (+)
G350688 NA non-coding downstream 54018 39442438 ~ 39442674 (+)
G350708 NA non-coding downstream 86779 39475199 ~ 39475688 (+)
G350733 LOC106608271 non-coding downstream 134979 39523399 ~ 39525963 (+)
G350211 NA other upstream 483367 38903730 ~ 38904774 (+)
LOC110522591 LOC105024333 other upstream 490485 38890314 ~ 38897681 (+)
G349877 NA other upstream 954117 38432179 ~ 38434024 (+)
G349855 NA other upstream 982677 38404645 ~ 38405464 (+)
LOC110522576 LOC106608246 other upstream 1891135 37445368 ~ 37501952 (+)
G351441 NA other downstream 746267 40134687 ~ 40136773 (+)
G352136 LOC106608303 other downstream 1601739 40990159 ~ 40990505 (+)
G352340 NA other downstream 1821827 41210247 ~ 41210998 (+)
G352341 NA other downstream 1822693 41211113 ~ 41214206 (+)
G352477 NA other downstream 1977781 41366201 ~ 41366607 (+)

Expression


Co-expression Network