G350733 (LOC106608271)


Basic Information

Item Value
gene id G350733
gene name LOC106608271
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 39523399 ~ 39525963 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU396943
CAGAGGGTTTGGTTTAGAAGATTAGTGACAGAAATATGCGATTCCCCAAAGGTAAACTGTTCACAGCTTTTAGAAGCATTATGGTGAAAATTCCTTGTCACCTGTAACATTGCAGACAAAAAAAACCAAACATTTGATGAACTGTTTAAAACAAACAGAAATATATATCAAATTCACATGAGCTCTTCCACGAGAAGCATAACCAGCATATAGCCTGGATGCCAACCCTCGTCTCAATAAACAAGCTAGGACTGACTCACCATCGGTCTGGCAATAACATCCCTGTCCAATAAACCACAGACCTAGACGGGCACCCAGGCTATTTAAAGTGAGTGTTAACATTCAAGCAGGAGTTATTTTAGCCTACTATAATGTACACAGTGTATTCTATAGAGCAGTAGGGTTGAATCGGCTGGAGATAGAGAGTGAGGAGTACAATCAGATGGAGACAAGTTAGGTGTTTCATTCACTGGAGGTTAAGGGAGCTGGGCGGTCTTGGGGTTTCTATTGCCTGGGGTTTTCTAGTCTCTACTCACTACCGATGTAAACAAACAAAGGCTAAAACAGTGGGCTGGGGATTTCTCCTGGGCCAGGGTataggaagtgtatactggctacggcgtcTCAAGAGGGACAAAGTTTTTCAAGAAAAggtattttaagggagtatgTGAGGCACAGACATTCACTTCTCCTAGTGGAGAACTGTTAGGCTGCAAACGCAACAGAACATTCTGCAGAGGCATTTAGGCTGCAAACCCAACAGAACATTCTGCAGAGACATTTAGGCTGAAAACCCAACAGAACATTCTGCAGAGGCATTTAGGCTGAAAACCCAACAGAACATTCTGCAGAGGCATTTAGGCTGAAACCCCAACAGAACATTCTGCATTTAGGCTGAAAACCCAACAGAACATTCTGCAGAGGCTGAAACCCCAACAGAACATTCTGCAGAGGCatgaaccttgtcagctcaggggtttgaacttacaaccttgcggttattagtccaactctctaaccactaggctaccctgcccggCATCGAAGCTTAATAATTGAACTCATTCATTTGGTGGGtgtttatatttgtcctgtttcctATTAGTCCTATGTGGGTTTTTGGCacatcccaactctccctgagacaccctcggagagtggggtcgcgaccctggagcaattattgcctatttattgccttacgccatttgcacacactgcgtatagactttttctattgtgttattgactgtacgtttgtttattccaggtgtaactctgttgttgttgttgttgttgtttgtgtcatactgcttttgctttattttggccatgTCCCAGTtgtaacttgttctcaactggccttaactggttaaataaaggcgaaatAAAAGATAAAATCAATAAAAAGTGCCGTGTGATTTTTTTTACCTCATCGGTGGCTGGCCCAATgccctaaccgctaggctacgtgCCACCCTAACCAACACAATGGCCTGTGGAAGCCATTCCCAGGTCACACACAGGTAAGAAGGTAGCACCTAGCCTAGTGCTGTGACTTCAGCCTACGTACACCGTTGAATATGAATAGGCCTTGTTTTGTGTGGCTGGGCAGCAAAAATGCAAATGAGAAAAGGCTAACAACCAACCCCTGACGACCTAAAAAAAACATCCTTCTCTCTCACAACCCACTGACTCTCTGACTATCACACAGAGGCAGCGCAGCAAGCTCTCAGGTTAGAAAAGACACCAATCCAGACCATGCAAAGGAATTCACACCATTTACATGACAGCCTTGTCCCACTGACAAGATGTACTCAATGTCCTTGGTTTTAAATTTCTCTTGTCTTCATTACGCTTCAGTACCTGTTCTTACTTGGTTACCTGCAATGGCTAGTGAAACCTGCAATGGCTAGTGAAGTACGCTATACCACTCTACCACTGTCTTCAGTCCAGGACTCCAGTAGAACTCAGTTCATTTACCAATTCTGGGCCGATTCCAAAGCTACAAGTTCTTAGTAAGTCTTCATAagttaataaataataatagtcATTATTCTGTCCAGGACCCATGGGATCTCATCTCAGATAAAACAGAATAATTTCTTCCAGCTGCATTTAGAGAAGGCCTTGCTGCGTCTGTCCGACAGctgcctcttcttctccttcctggTCTTGTGTTTGATGGCAGCAAAGATGGCCGCGTCGAACGCCTCTTTTAAGTTCTTCTGCGTCAACGAAGAACACTCGACATAGTCCGCCGCTCTGATCTTCACCGCCACGCTCCGCGCCCGATTGGTCAGCACCGGTTTGACCCCGCAGCGGGCCAGGTTGATCAGGACGTTGACGTCCAGCAGGAGGTCGGACTGGGTGCCCACGAGGATGATGGGAGCTGAGGGGTTGCAGGCTCGGATCTCTGGGATCCACTTGTTGGTGACATTGTGGAAGGAGGTGGGGTTGACCACACTGAAGCAGAGCAGGAAGACGTCCGTGTGGGAGTAGGAGAGGGAGCGGAAATCGTCAA
>TU396946
CAGAGGGTTTGGTTTAGAAGATTAGTGACAGAAATATGCGATTCCCCAAAGGTAAACTGTTCACAGCTTTTAGAAGCATTATGGTGAAAATTCCTTGTCACCTGTAACATTGCAGACAAAAAAAACCAAACATTTGATGAACTGTTTAAAACAAACAGAAATATATATCAAATTCACATGAGCTCTTCCACGAGAAGCATAACCAGCATATAGCCTGGATGCCAACCCTCGTCTCAATAAACAAGCTAGGACTGACTCACCATCGGTCTGGCAATAACATCCCTGTCCAATAAACCACAGACCTAGACGGGCACCCAGGCTATTTAAAGTGAGTGTTAACATTCAAGCAGGAGTTATTTTAGCCTACTATAATGTACACAGTGTATTCTATAGAGCAGTAGGGTTGAATCGGCTGGAGATAGAGAGTGAGGAGTACAATCAGATGGAGACAAGTTAGGTGTTTCATTCACTGGAGGTTAAGGGAGCTGGGCGGTCTTGGGGTTTCTATTGCCTGGGGTTTTCTAGTCTCTACTCACTACCGATGTAAACAAACAAAGGCTAAAACAGTGGGCTGGGGATTTCTCCTGGGCCAGGGTataggaagtgtatactggctacggcgtcTCAAGAGGGACAAAGTTTTTCAAGAAAAggtattttaagggagtatgTGAGGCACAGACATTCACTTCTCCTAGTGGAGAACTGTTAGGCTGCAAACGCAACAGAACATTCTGCAGAGGCATTTAGGCTGCAAACCCAACAGAACATTCTGCAGAGACATTTAGGCTGAAAACCCAACAGAACATTCTGCAGAGGCATTTAGGCTGAAAACCCAACAGAACATTCTGCAGAGGCTGAAACCCCAACAGAACATTCTGCAGAGGCatgaaccttgtcagctcaggggtttgaacttacaaccttgcggttattagtccaactctctaaccactaggctaccctgcccggCATCGAAGCTTAATAATTGAACTCATTCATTTGGTGGGtgtttatatttgtcctgtttcctATTAGTCCTATGTGGGTTTTTGGCacatcccaactctccctgagacaccctcggagagtggggtcgcgaccctggagcaattattgcctatttattgccttacgccatttgcacacactgcgtatagactttttctattgtgttattgactgtacgtttgtttattccaggtgtaactctgttgttgttgttgttgttgtttgtgtcatactgcttttgctttattttggccatgTCCCAGTtgtaacttgttctcaactggccttaactggttaaataaaggcgaaatAAAAGATAAAATCAATAAAAAGTGCCGTGTGATTTTTTTTACCTCATCGGTGGCTGGCCCAATgccctaaccgctaggctacgtgCCACCCTAACCAACACAATGGCCTGTGGAAGCCATTCCCAGGTCACACACAGGTAAGAAGGTAGCACCTAGCCTAGTGCTGTGACTTCAGCCTACGTACACCGTTGAATATGAATAGGCCTTGTTTTGTGTGGCTGGGCAGCAAAAATGCAAATGAGAAAAGGCTAACAACCAACCCCTGACGACCTAAAAAAAACATCCTTCTCTCTCACAACCCACTGACTCTCTGACTATCACACAGAGGCAGCGCAGCAAGCTCTCAGGTTAGAAAAGACACCAATCCAGACCATGCAAAGGAATTCACACCATTTACATGACAGCCTTGTCCCACTGACAAGATGTACTCAATGTCCTTGGTTTTAAATTTCTCTTGTCTTCATTACGCTTCAGTACCTGTTCTTACTTGGTTACCTGCAATGGCTAGTGAAACCTGCAATGGCTAGTGAAGTACGCTATACCACTCTACCACTGTCTTCAGTCCAGGACTCCAGTAGAACTCAGTTCATTTACCAATTCTGGGCCGATTCCAAAGCTACAAGTTCTTAGTAAGTCTTCATAagttaataaataataatagtcATTATTCTGTCCAGGACCCATGGGATCTCATCTCAGATAAAACAGAATAATTTCTTCCAGCTGCATTTAGAGAAGGCCTTGCTGCGTCTGTCCGACAGctgcctcttcttctccttcctggTCTTGTGTTTGATGGCAGCAAAGATGGCCGCGTCGAACGCCTCTTTTAAGTTCTTCTGCGTCAACGAAGAACACTCGACATAGTCCGCCGCTCTGATCTTCACCGCCACGCTCCGCGCCCGATTGGTCAGCACCGGTTTGACCCCGCAGCGGGCCAGGTTGATCAGGACGTTGACGTCCAGCAGGAGGTCGGACTGGGTGCCCACGAGGATGATGGGAGCTGAGGGGTTGCAGGCTCGGATCTCTGGGATCCACTTGTTGGTGACATTGTGGAAGGAGGTGGGGTTGACCACACTGAAGCAGAGCAGGAAGACGTCCGTGTGGGAGTAGGAGAGGGAGCGGAAATCGTCAA
>TU396945
ATAGAGAGTGAGGAGTACAATCAGATGGAGACAAGTTAGGTGTTTCATTCACTGGAGGTTAAGGGAGCTGGGCGGTCTTGGGGTTTCTATTGCCTGGGGTTTTCTAGTCTCTACTCACTACCGATGTAAACAAACAAAGGCTAAAACAGTGGGCTGGGGATTTCTCCTGGGCCAGGGTataggaagtgtatactggctacggcgtcTCAAGAGGGACAAAGTTTTTCAAGAAAAggtattttaagggagtatgTGAGGCACAGACATTCACTTCTCCTAGTGGAGAACTGTTAGGCTGCAAACGCAACAGAACATTCTGCAGAGGCATTTAGGCTGCAAACCCAACAGAACATTCTGCAGAGACATTTAGGCTGAAAACCCAACAGAACATTCTGCAGAGGCATTTAGGCTGCAAACCCAACAGAACATTCTGCAGAGACATTTAGGCTGAAAACCCAACAGAACATTCTGCAGAGGCATTTAGGCTGAAAACCCAACAGAACATTCTGCAGAGGCatgaaccttgtcagctcaggggtttgaacttacaaccttgcggttattagtccaactctctaaccactaggctaccctgcccggCATCGAAGCTTAATAATTGAACTCATTCATTTGGTGGGtgtttatatttgtcctgtttcctATTAGTCCTATGTGGGTTTTTGGCacatcccaactctccctgagacaccctcggagagtggggtcgcgaccctggagcaattattgcctatttattgccttacgccatttgcacacactgcgtatagactttttctattgtgttattgactgtacgtttgtttattccaggtgtaactctgttgttgttgttgttgttgtttgtgtcatactgcttttgctttattttggccatgTCCCAGTtgtaacttgttctcaactggccttaactggttaaataaaggcgaaatAAAAGATAAAATCAATAAAAAGTGCCGTGTGATTTTTTTTACCTCATCGGTGGCTGGCCCAATgccctaaccgctaggctacgtgCCACCCTAACCAACACAATGGCCTGTGGAAGCCATTCCCAGGTCACACACAGGTAAGAAGGTAGCACCTAGCCTAGTGCTGTGACTTCAGCCTACGTACACCGTTGAATATGAATAGGCCTTGTTTTGTGTGGCTGGGCAGCAAAAATGCAAATGAGAAAAGGCTAACAACCAACCCCTGACGACCTAAAAAAAACATCCTTCTCTCTCACAACCCACTGACTCTCTGACTATCACACAGAGGCAGCGCAGCAAGCTCTCAGGTTAGAAAAGACACCAATCCAGACCATGCAAAGGAATTCACACCATTTACATGACAGCCTTGTCCCACTGACAAGATGTACTCAATGTCCTTGGTTTTAAATTTCTCTTGTCTTCATTACGCTTCAGTACCTGTTCTTACTTGGTTACCTGCAATGGCTAGTGAAACCTGCAATGGCTAGTGAAGTACGCTATACCACTCTACCACTGTCTTCAGTCCAGGACTCCAGTAGAACTCAGTTCATTTACCAATTCTGGGCCGATTCCAAAGCTACAAGTTCTTAGTAAGTCTTCATAagttaataaataataatagtcATTATTCTGTCCAGGACCCATGGGATCTCATCTCAGATAAAACAGAATAATTTCTTCCAGCTGCATTTAGAGAAGGCCTTGCTGCGTCTGTCCGACAGctgcctcttcttctccttcctggTCTTGTGTTTGATGGCAGCAAAGATGGCCGCGTCGAACGCCTCTTTTAAGTTCTTCTGCGTCAACGAAGAACACTCGACATAGTCCGCCGCTCTGATCTTCACCGCCACGCTCCGCGCCCGATTGGTCAGCACCGGTTTGACCCCGCAGCGGGCCAGGTTGATCAGGACGTTGACGTCCAGCAGGAGGTCGGACTGGGTGCCCACGAGGATGATGGGAGCTGAGGGGTTGCAGGCTCGGATCTCTGGGATCCACTTGTTGGTGACATTGTGGAAGGAGGTGGGGTTGACCACACTGAAGCAGAGCAGGAAGACGTCCGTGTGGGAGTAGGAGAGGGAGCGGAAATCGTCAA

Function

NR:

description
PREDICTED: rho-related GTP-binding protein RhoV-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU396943 False 2527 lncRNA 0.46 2 39523399 39525963
TU396946 False 2457 lncRNA 0.46 2 39523399 39525963
TU396945 True 2085 lncRNA 0.47 3 39523817 39525963

Neighbor

gene id symbol gene type direction distance location
pigh pigh coding upstream 44995 39473308 ~ 39478404 (+)
rgs6 LOC106571069 coding upstream 138899 39222711 ~ 39384500 (+)
LOC110521105 LOC106571085 coding upstream 336535 39035394 ~ 39190157 (+)
LOC118964499 NA coding upstream 410052 39112723 ~ 39113347 (+)
LOC118964477 NA coding upstream 527646 38994685 ~ 38995753 (+)
vps18 LOC106608270 coding downstream 2464 39528427 ~ 39562620 (+)
ino80 ino80 coding downstream 37616 39563579 ~ 39651706 (+)
syndig1l LOC106608262 coding downstream 656414 40182377 ~ 40268661 (+)
LOC118964479 NA coding downstream 785675 40311638 ~ 40312681 (+)
LOC118936457 NA coding downstream 853571 40379534 ~ 40386303 (+)
G350708 NA non-coding upstream 47711 39475199 ~ 39475688 (+)
G350688 NA non-coding upstream 80725 39442438 ~ 39442674 (+)
G350674 NA non-coding upstream 111310 39411829 ~ 39412089 (+)
G350664 NA non-coding upstream 132013 39389603 ~ 39391386 (+)
G350665 NA non-coding upstream 134979 39388141 ~ 39389474 (+)
G350744 NA non-coding downstream 40992 39566955 ~ 39567609 (+)
G350763 NA non-coding downstream 98946 39624909 ~ 39625349 (+)
G350783 NA non-coding downstream 132500 39658463 ~ 39658882 (+)
G350788 NA non-coding downstream 135710 39661673 ~ 39661953 (+)
G350211 NA other upstream 618625 38903730 ~ 38904774 (+)
LOC110522591 LOC105024333 other upstream 625743 38890314 ~ 38897681 (+)
G349877 NA other upstream 1089375 38432179 ~ 38434024 (+)
G349855 NA other upstream 1117935 38404645 ~ 38405464 (+)
G351441 NA other downstream 608724 40134687 ~ 40136773 (+)
G352136 LOC106608303 other downstream 1464196 40990159 ~ 40990505 (+)
G352340 NA other downstream 1684284 41210247 ~ 41210998 (+)
G352341 NA other downstream 1685150 41211113 ~ 41214206 (+)
G352477 NA other downstream 1840238 41366201 ~ 41366607 (+)

Expression


Co-expression Network