si:ch211-127i16.2 (LOC106565287)


Basic Information

Item Value
gene id si:ch211-127i16.2
gene name LOC106565287
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 34107180 ~ 34147326 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977324.1
GCTGTTGGGTTTTTTCTTCCAGTCCCGAAGTCATCCACATGACTGTTTATGGCTCGATTATGTAAACGACTTATCTGGTGTAAAAGTTTGATAAAGCAGTTACAGTCTTCAGTACGAAACATTTAGCCAACAGTTAAATTAGAATAGTCCAAGTTTTCAGAGTTTTGCAGTCATGACTGAAGAAACGTGGGATGTTGTTATTGTCGGCGCTGGGCTGTCAGGACTGAGTGCTGCTCAGACTCTGCGGAAGAGAAATGGCAAACTCAGAATATTAATTCTGGAAGGAAAAGACCGGGTAGGAGGACGAACTGTTACCCAGGAATTACTTGCCGCCCACGGCATTGATCGCTGGGACATGGGAGGGCAGTGGGTTGGCAGCACTCAGACATACGTCATGGACCTCATTCAGGAGTTTGGCCTGgaggtctacacacaatacaccacagGCAAGAAAGTACACCACGTTGGTGGTCCTCGTGCCAAGGTTcgcagcagcagcaccagtatCCCTGCCCTCTCTACACTGGTGCTACTGGACCTGTCACAGCTCGTCTGGAAGATTGACAGGTTGAGTTCCACAGTGTCAGTGGAGGACCCCATGAAGACCCCCAATGCCCAGGAGTTGGACAGTATGACCCTACATTCCTACATAGAGAAACATGCCTGGACAGAAGaGATGAAGGAGGAGATGGGTGTGTGCAGCCGGGTTGTGTTTGGTATGGAGCCCAATCAGATGTCCTTCCTCTACTTCCTCATGTATGCTGCAGCAGCTGGAGGTGTCCTGTGCCTGCTGGAGAGCACCCCAGGCTCAGCACAGGAGTTCAGGGTCAAGGGGGGAACCCAGCAGCTGTCAGAGCGTTTAGCCCAGCAGATTGGGTGGGAGAGTGTCCGGCTGGGCAAGGCTGTGACGGCCATATGGCAGGACGCTGAGCAGGCCAAGGTGATGACAGCCACCCACTCCTACCTGTGCAGAGCAGTGATTGTCACCTGCCCTCCTCACCTggcagCTAAGATCCACTACCAACCTGCTCTACCCATTCAGAGAGAACACCTCACACAGAACATGCCTGTTGGGCACTTGATGAAGTTTGTCATCACCTACCAGATGgcgTTCTGGCGTGAGAAGGGTTTCTCGGGAGAGATAGTGGCACGACCCTCTGCGGATTGTCCCTTGAGTATCACCTTCGACGGCACCAGTCCCAGTGGGAGTGCTGCTCTTGTGGGCTTCATCTCTGGCATGCAGGCCTACGATTGGAGCTCCAGAGAGCTGAGCGAGAGGAGGGATGCTGTCATTCTCAGCCTGGTGAAATACCTGGGAGAGGAGGCTGCTAGCTACATCCACTATGAGGAGAAAGACTGGGCCTTGGAGGAGTACAGCGGGGGTTGTCCTGTTAATGTCATGGCACCGGGTCTGCTGACATATTACCACCCCAGCCTCCGCACGCCCTGTGGCAGGATCCACTGGGCCGGCACGGAGACGGCCACCCAGTGGTGTGGCTATATGGATGGGGCAATTCAGTCAGGTCAGAGGGCAGCCCTAGAAGTCCTAGCCAGGCTGTGCCCTTTCACCCTGAcccaggaggagcaggaggcTGTGCAGGCTGCCCAGAACCAGAACCACGAGTCTGGACCATGCCAACACATACCTTCCACATCCCATCTCCGCAGGGCTCTGATCCTCACCACGCTCATCATGGCCACTGCTGTACTATTGGCTCAGCCACAGCTCTGCCGAGACTGGATTGGACAGGCTCGGCAGGTAGTGCTACGAAGGTTTGCTTTGTGGTAATAAAATATGCTGTTGTGTTGGAAAAACATCCACTTGACAGGGAAATGCCTCCGCTCACAGATATCTAAAGATGTTAAATACGATTGAATTATCTGTGACATACAGTATGGTTAACACTGTTTGCCTGGTGGACATTTTTCATTTAAAGAAATGTAATGCTTGTACATTGTAatgtggtggtgggtgggggtgAGACTatacagaaaaaaaaaatgtttactttgGACTGCATTGTACTGTAAGTCAATTCAATTATATGTAAAGGGTTTTATATGTGAACATTCCCTACAGTCGTATTAAGTCATACAGTgccgtcagaaagtattcacagcctTGATTTTTTCCGCATTTCGTTCTGTTACAAAGttggattaaaatggatttaattgtatttttttgtcaacgatcgacacaaaatactctaatgtcaaagtagaagaaAAATGCTAAAATGTAAAAAGGTGTATGAAAATAaaacacatat
>XM_036977325.1
GCTGTTGGGTTTTTTCTTCCAGTCCCGAAGTCATCCACATGACTGTTTATGGCTCGATTATGTAAACGACTTATCTGGTGTAAAAGTTTGATAAAGCAGTTACAGTCTTCAGTACGAAACATTTAGCCAACAGTTAAATTAGAATAGTCCAAGTTTTCAGAGTTTTGCAGTCATGACTGAAGAAACGTGGGATGTTGTTATTGTCGGCGCTGGGCTGTCAGGACTGAGTGCTGCTCAGACTCTGCGGAAGAGAAATGGCAAACTCAGAATATTAATTCTGGAAGGAAAAGACCGGGTAGGAGGACGAACTGTTACCCAGGAATTACTTGCCGCCCACGGCATTGATCGCTGGGACATGGGAGGGCAGTGGGTTGGCAGCACTCAGACATACGTCATGGACCTCATTCAGGAGTTTGGCCTGgaggtctacacacaatacaccacagGCAAGAAAGTACACCACGTTGGTGGTCCTCGTGCCAAGGTTcgcagcagcagcaccagtatCCCTGCCCTCTCTACACTGGTGCTACTGGACCTGTCACAGCTCGTCTGGAAGATTGACAGGTTGAGTTCCACAGTGTCAGTGGAGGACCCCATGAAGACCCCCAATGCCCAGGAGTTGGACAGTATGACCCTACATTCCTACATAGAGAAACATGCCTGGACAGAAGaGATGAAGGAGGAGATGGGTGTGTGCAGCCGGGTTGTGTTTGGTATGGAGCCCAATCAGATGTCCTTCCTCTACTTCCTCATGTATGCTGCAGCAGCTGGAGGTGTCCTGTGCCTGCTGGAGAGCACCCCAGGCTCAGCACAGGAGTTCAGGGTCAAGGGGGGAACCCAGCAGCTGTCAGAGCGTTTAGCCCAGCAGATTGGGTGGGAGAGTGTCCGGCTGGGCAAGGCTGTGACGGCCATATGGCAGGACGCTGAGCAGGCCAAGGTGATGACAGCCACCCACTCCTACCTGTGCAGAGCAGTGATTGTCACCTGCCCTCCTCACCTggcagCTAAGATCCACTACCAACCTGCTCTACCCATTCAGAGAGAACACCTCACACAGAACATGCCTGTTGGGCACTTGATGAAGTTTGTCATCACCTACCAGATGgcgTTCTGGCGTGAGAAGGGTTTCTCGGGAGAGATAGTGGCACGACCCTCTGCGGATTGTCCCTTGAGTATCACCTTCGACGGCACCAGTCCCAGTGGGAGTGCTGCTCTTGTGGGCTTCATCTCTGGCATGCAGGCCTACGATTGGAGCTCCAGAGAGGACTGGGCCTTGGAGGAGTACAGCGGGGGTTGTCCTGTTAATGTCATGGCACCGGGTCTGCTGACATATTACCACCCCAGCCTCCGCACGCCCTGTGGCAGGATCCACTGGGCCGGCACGGAGACGGCCACCCAGTGGTGTGGCTATATGGATGGGGCAATTCAGTCAGGTCAGAGGGCAGCCCTAGAAGTCCTAGCCAGGCTGTGCCCTTTCACCCTGAcccaggaggagcaggaggcTGTGCAGGCTGCCCAGAACCAGAACCACGAGTCTGGACCATGCCAACACATACCTTCCACATCCCATCTCCGCAGGGCTCTGATCCTCACCACGCTCATCATGGCCACTGCTGTACTATTGGCTCAGCCACAGCTCTGCCGAGACTGGATTGGACAGGCTCGGCAGGTAGTGCTACGAAGGTTTGCTTTGTGGTAATAAAATATGCTGTTGTGTTGGAAAAACATCCACTTGACAGGGAAATGCCTCCGCTCACAGATATCTAAAGATGTTAAATACGATTGAATTATCTGTGACATACAGTATGGTTAACACTGTTTGCCTGGTGGACATTTTTCATTTAAAGAAATGTAATGCTTGTACATTGTAatgtggtggtgggtgggggtgAGACTatacagaaaaaaaaaatgtttactttgGACTGCATTGTACTGTAAGTCAATTCAATTATATGTAAAGGGTTTTATATGTGAACATTCCCTACAGTCGTATTAAGTCATACAGTgccgtcagaaagtattcacagcctTGATTTTTTCCGCATTTCGTTCTGTTACAAAGttggattaaaatggatttaattgtatttttttgtcaacgatcgacacaaaatactctaatgtcaaagtagaagaaAAATGCTAAAATGTAAAAAGGTGTATGAAAATAaaacacatat

Function

NR:

description
probable flavin-containing monoamine oxidase A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977324.1 False 2273 mRNA 0.50 12 34107180 34147326
XM_036977325.1 True 2186 mRNA 0.50 11 34107180 34147326

Neighbor

gene id symbol gene type direction distance location
LOC110523649 LOC106565324 coding upstream 18196 33846773 ~ 34088984 (+)
trnaa-ugc-11 NA coding upstream 74340 34032765 ~ 34032840 (+)
LOC110523646 LOC106565369 coding upstream 263059 33830706 ~ 33844121 (+)
LOC100136128 LOC106565394 coding upstream 307466 33640488 ~ 33799714 (+)
LOC110523645 LOC106565424 coding upstream 614782 33490123 ~ 33492398 (+)
adra1ab LOC106565247 coding downstream 289460 34436786 ~ 34448792 (+)
LOC110523660 LOC106565209 coding downstream 939500 35086826 ~ 35206863 (+)
si:dkey-242g16.2 LOC106565196 coding downstream 1206772 35354098 ~ 35357244 (+)
stoml2 stml2 coding downstream 1320614 35467940 ~ 35480670 (+)
LOC118964586 LOC106565090 coding downstream 1334902 35482228 ~ 35542795 (+)
G392756 NA non-coding upstream 14994 34091852 ~ 34092186 (+)
G392063 NA non-coding upstream 17386 34089095 ~ 34089794 (+)
G392226 NA non-coding upstream 28070 34078854 ~ 34079110 (+)
G392195 NA non-coding upstream 35795 34028045 ~ 34071385 (+)
G392776 NA non-coding downstream 380 34147474 ~ 34150795 (+)
G392804 NA non-coding downstream 35414 34182740 ~ 34183700 (+)
G392805 NA non-coding downstream 36441 34183767 ~ 34183976 (+)
G392806 NA non-coding downstream 37993 34185319 ~ 34185533 (+)
G392900 NA non-coding downstream 74830 34222156 ~ 34222491 (+)
G391805 NA other upstream 745839 33360957 ~ 33361341 (+)
G391513 LOC100136561 other upstream 944200 33158826 ~ 33162980 (+)
G390393 NA other upstream 1886647 32220181 ~ 32220533 (+)
G390184 NA other upstream 2146435 31960355 ~ 31960745 (+)
G388019 NA other upstream 3819356 30286951 ~ 30287824 (+)
G394882 NA other downstream 1757786 35905112 ~ 35905781 (+)
G394910 NA other downstream 1819611 35966937 ~ 36004829 (+)
you2 you2 other downstream 1885934 36033260 ~ 36034806 (+)
G395005 LOC106564805 other downstream 2055575 36202901 ~ 36206616 (+)

Expression


Co-expression Network