si:dkey-242g16.2 (LOC106565196)


Basic Information

Item Value
gene id si:dkey-242g16.2
gene name LOC106565196
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 35354098 ~ 35357244 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602558.2
CTCCGTTTGACGAAGGTGGAGACAGGGGACATTTGATTGGTTAAACCACACGGTTCACGTGAAGACTCAACTGCTGGGGGCGCGACTCACGAGTAGGATCTCATTAAATACCCCTTGGATGTCTTGAGAGAACATTCACTTGAGCCGTCGAAAGGGTTGATACTGTAACAACGTTTAGAATGGAAACAACTGGGAGGTGATATTACGAAGATATCATTCTGGTCTTTGCTAGAACATATTGTTAGCTCTGCTCCATACAACATCCAGTCTGAGAATGAGCTGTACACAAGTGCTTCATGTGTTTGTCGGCCACTCCATACCCCAGCAGTCTGCCATGCCAGTGGACCTCGCCATGCAACTGTGCCAGAGCCTGCCCCTCTGTCGTCTACAGGGTGTGTCCCCGCTGAAGATCCTGAGACCTCACCTTCACACCAGAGACTACCGGTCTCCCAGAGCCAGCCTTCACACTGCTGCGCCGcactcctcatcctcatcctcctcctccccagagcGGTCTGAGACCAAGAGCTGTGTGCGTAGGAGCAGTGCCAACCCTAAGAAGAAGCGTGTAGTGTTTGCTGATACTAAGGGGCTGTCTCTCACTGCAGTGCGACTATATATCCCAGACAACTCCTTTTCCACGACCCAGAGGGCTgactcttcttccctctctaacacctcctcccctcctatcAGACCGCAGGGCCTGTGGCCGGGTCCTGCCGGTGGGAAGCAGCAGCTCTTGAGATTAAGTCTGGCCTTCCCCCAACCCATGGCAGACTTCAAGACCTTCCAAGCCCGCCTGCAGGAGGTCCTGGTGCAGCTGGAGAGCTGCAGTGTGACTGAGCGATCACTGAGTGGCACCGTGCGTGTCTGCAATGTCAGCTTTGAGAAGGCTGTGTACGTGCGAGTAACCTTTGACTCGTGGCGAAGCCACCAGGACATCCCCTGTTCCTACCTGCAGCAGCGCTACGGGGCCACTGAGACTGACGTGTTTGCCTTTGATGTTCCCCTCCCCCAAAACCTGGATCCAAGCAAGCGTCTGGAGTTCTGTGTGTTGTTCCGGCCAGGCAGCGGGGCCGCGCTGCGTTGGGACAACAACGGGGGACagaactactgtgtgtgtgtagagcctGAGGGGGCTGGGTATAGTAAAGCCCCGGTACAGCGCCGCAACACCACTCCCCACTCCCTCCAACGTCCCCCCTCATGGCCAAGGAGTGGGGGAACCAGCCTGAAGAGCCCCCTTTACACTGAACTCTCCCACCCCTCAGAAGCCTTCATCAGCCAGAGTTCAGGGTGACTGGATAACTGTCACTTTCTGGTAGAGTGAACTCTCCCTAGTTGGGTCAGGAAGCGAGCCAGCCTTGCCACTTCTGATTCATTCAGGTGTGGATCTAAGTAGCTGTCTCAACTGCCAGCTGGGCAATCTGTTGCTTAGAAAATGTGCAATGTTAAACCTGATTTTAATCTTGAGCGAGGAAGTGACTCATTGAATTGACTGTTAAAATGGAATGACCCCACCTGATGGTAGAGGTTAGGAGGACTACAATGTGTTCCTTTGTAGTGGCCCTTAACGTCCACGGCTCATCTGGGCCCCAACTAATGTGAAATTGATTTGCACCATTGTATTTCTTACAGAATATAGTCctgtgttacttttttttttacccatttcaGTGGGTGAGTTTCCCAGCACCAAGATCACATAATAAGTTATTATTTTAGTGTATCTAGGCTTCTGGGAAACGTCCAGAGGTTTTTGTTTCTAGGTGTATATGATGCACTAATTGTACAAACTCAATGCCCTCCCACTGAGGCTGGATGCTCTTTATAACTGCCATGCAGACTCCAACTTCAGCCACCCTGACTGGTCTTTGAACAAATGTAATATGTGCTTTGAGTTTTTATTAAACATTTGAAAATAA
>XM_021602557.2
TTGACGAAGGTGGAGACAGGGGACATTTGATTGGTTAAACCACACGGTTCACGTGAAGACTCAACTGCTGGGGGCGCGACTCACGAGTAGGATCTCATTAAATACCCCTTGGATGTCTTGAGAGAACATTCACTTGAGCCGTCGAAAGGGTTGATACTGTAACAACGTTTAGAATGGAAACAACTGGGAGGTGATATTACGAAGGTATTCAGTGTGTTTATTCTCTGTTCTTCAAGCCAATTACAGATGGACTTTATTAGAGTGAATATTCCATATCATTCTGGTCTTTGCTAGAACATATTGTTAGCTCTGCTCCATACAACATCCAGTCTGAGAATGAGCTGTACACAAGTGCTTCATGTGTTTGTCGGCCACTCCATACCCCAGCAGTCTGCCATGCCAGTGGACCTCGCCATGCAACTGTGCCAGAGCCTGCCCCTCTGTCGTCTACAGGGTGTGTCCCCGCTGAAGATCCTGAGACCTCACCTTCACACCAGAGACTACCGGTCTCCCAGAGCCAGCCTTCACACTGCTGCGCCGcactcctcatcctcatcctcctcctccccagagcGGTCTGAGACCAAGAGCTGTGTGCGTAGGAGCAGTGCCAACCCTAAGAAGAAGCGTGTAGTGTTTGCTGATACTAAGGGGCTGTCTCTCACTGCAGTGCGACTATATATCCCAGACAACTCCTTTTCCACGACCCAGAGGGCTgactcttcttccctctctaacacctcctcccctcctatcAGACCGCAGGGCCTGTGGCCGGGTCCTGCCGGTGGGAAGCAGCAGCTCTTGAGATTAAGTCTGGCCTTCCCCCAACCCATGGCAGACTTCAAGACCTTCCAAGCCCGCCTGCAGGAGGTCCTGGTGCAGCTGGAGAGCTGCAGTGTGACTGAGCGATCACTGAGTGGCACCGTGCGTGTCTGCAATGTCAGCTTTGAGAAGGCTGTGTACGTGCGAGTAACCTTTGACTCGTGGCGAAGCCACCAGGACATCCCCTGTTCCTACCTGCAGCAGCGCTACGGGGCCACTGAGACTGACGTGTTTGCCTTTGATGTTCCCCTCCCCCAAAACCTGGATCCAAGCAAGCGTCTGGAGTTCTGTGTGTTGTTCCGGCCAGGCAGCGGGGCCGCGCTGCGTTGGGACAACAACGGGGGACagaactactgtgtgtgtgtagagcctGAGGGGGCTGGGTATAGTAAAGCCCCGGTACAGCGCCGCAACACCACTCCCCACTCCCTCCAACGTCCCCCCTCATGGCCAAGGAGTGGGGGAACCAGCCTGAAGAGCCCCCTTTACACTGAACTCTCCCACCCCTCAGAAGCCTTCATCAGCCAGAGTTCAGGGTGACTGGATAACTGTCACTTTCTGGTAGAGTGAACTCTCCCTAGTTGGGTCAGGAAGCGAGCCAGCCTTGCCACTTCTGATTCATTCAGGTGTGGATCTAAGTAGCTGTCTCAACTGCCAGCTGGGCAATCTGTTGCTTAGAAAATGTGCAATGTTAAACCTGATTTTAATCTTGAGCGAGGAAGTGACTCATTGAATTGACTGTTAAAATGGAATGACCCCACCTGATGGTAGAGGTTAGGAGGACTACAATGTGTTCCTTTGTAGTGGCCCTTAACGTCCACGGCTCATCTGGGCCCCAACTAATGTGAAATTGATTTGCACCATTGTATTTCTTACAGAATATAGTCctgtgttacttttttttttacccatttcaGTGGGTGAGTTTCCCAGCACCAAGATCACATAATAAGTTATTATTTTAGTGTATCTAGGCTTCTGGGAAACGTCCAGAGGTTTTTGTTTCTAGGTGTATATGATGCACTAATTGTACAAACTCAATGCCCTCCCACTGAGGCTGGATGCTCTTTATAACTGCCATGCAGACTCCAACTTCAGCCACCCTGACTGGTCTTTGAACAAATGTAATATGTGCTTTGAGTTTTTATTAAACATTTGAAAATAA

Function

NR:

description
protein phosphatase 1 regulatory subunit 3C-B-like

GO: NA

KEGG:

id description
K07189 PPP1R3; protein phosphatase 1 regulatory subunit 3A/B/C/D/E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602558.2 False 1928 mRNA 0.51 3 35354098 35357244
XM_021602557.2 True 1990 mRNA 0.51 3 35354104 35357244

Neighbor

gene id symbol gene type direction distance location
LOC110523660 LOC106565209 coding upstream 155107 35086826 ~ 35206863 (+)
adra1ab LOC106565247 coding upstream 905306 34436786 ~ 34448792 (+)
si:ch211-127i16.2 LOC106565287 coding upstream 1206772 34107180 ~ 34147326 (+)
LOC110523649 LOC106565324 coding upstream 1265114 33846773 ~ 34088984 (+)
trnaa-ugc-11 NA coding upstream 1321258 34032765 ~ 34032840 (+)
stoml2 stml2 coding downstream 110696 35467940 ~ 35480670 (+)
LOC118964586 LOC106565090 coding downstream 124984 35482228 ~ 35542795 (+)
unc13bb LOC106565090 coding downstream 189301 35546545 ~ 35595618 (+)
atp8b5b LOC106565083 coding downstream 245357 35602601 ~ 35620548 (+)
LOC110523670 LOC106565078 coding downstream 282484 35639728 ~ 35651003 (+)
G394373 NA non-coding upstream 49553 35304311 ~ 35304545 (+)
G394361 NA non-coding upstream 54456 35299373 ~ 35299642 (+)
G394321 NA non-coding upstream 84128 35269644 ~ 35269970 (+)
G394320 NA non-coding upstream 84458 35269043 ~ 35269640 (+)
G394312 NA non-coding upstream 90741 35263087 ~ 35263357 (+)
G394485 NA non-coding downstream 85322 35442566 ~ 35443828 (+)
G394495 NA non-coding downstream 106575 35463819 ~ 35464867 (+)
G394497 NA non-coding downstream 108859 35466103 ~ 35466675 (+)
G394473 NA non-coding downstream 123664 35480908 ~ 35481712 (+)
G394475 NA non-coding downstream 203281 35560525 ~ 35596524 (+)
G392776 NA other upstream 1205397 34147474 ~ 34150795 (+)
G391805 NA other upstream 1992757 33360957 ~ 33361341 (+)
G391513 LOC100136561 other upstream 2191118 33158826 ~ 33162980 (+)
G390393 NA other upstream 3133565 32220181 ~ 32220533 (+)
G390184 NA other upstream 3393353 31960355 ~ 31960745 (+)
G394882 NA other downstream 547868 35905112 ~ 35905781 (+)
G394910 NA other downstream 609693 35966937 ~ 36004829 (+)
you2 you2 other downstream 676016 36033260 ~ 36034806 (+)
G395005 LOC106564805 other downstream 845657 36202901 ~ 36206616 (+)
G395034 NA other downstream 923056 36280300 ~ 36301290 (+)

Expression


Co-expression Network