stoml2 (stml2)


Basic Information

Item Value
gene id stoml2
gene name stml2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 35467940 ~ 35480670 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602568.2
CCTATCAACAGGGGGACGTGTTTAACCAGTGCACCAATTTGATGTTGTAACTTCGTTTCCTGAATCGGTCGAGGGTCACACATGAACAAATATTCATTCATTTCACCTAAACCACATAGCTACATATCAGCCAACAATTACGTTAAGAAAATGTTCCGAACATTGTGCCGGACTGGCGGTGCCCTTTTAATGCATTCCCAGAGAACAGTGCCCACAGTCCCAGCGTTGTGGGTGACACAAGCCCAGCAGCGATGTGCGTCCAGTCTGCCCATGAACACTGTGGTTCTGTTTGTGCCACAACAAGAATCCTGGGTTGTGGAAAGGATGGGCCGCTTCCATCGCATCTTAGAGCCGGGCTTGAATTTCCTAATACCAATACTGGACAAAATCCGTTATGTGCAAAGTCTTAAAGAGATAGTTATTGATGTCCCAGAGCAGTCTGCGGTCTCTTTAGATAATGTGACACTACAGATAGATGGAGTCCTCTATCTTAGAATATTGGATCCTTTTAAGGCCAGCTATGGAGTTGAGGACCCAGAGTATGCTGTCACCCAACTTGCCCAGACCACCATGCGGTCAGAGCTGGGAAAACTGACCCTGGACAAAGTATTCAGGGAAAGAGAGACCCTTAATACCAACATAGTCCACTCCATCAACCAGGCGTCAGATGATTGGGGAATCCGTTGCCTTCGTTATGAAATCAAGGATATACATGTTCCACCACGTGTCAAAGAGTCCATGCAGATGCAGGTGGAGGCAGAGCGTAAGAAGAGAGCCACTGTGCTGGAGTCTGAAGGTCACAAGGAAGCAGCCATCAATGTTGCTGAGGGTCGCAAGCAAGCTCAGATCCTGGCCTCGGAAGGACAGAAAACAGAACAGATCAACAAAGCAGCTGGTGAGGCCAATGCTGTCTTAGCCAAAGCAGAGGCCAAAGCTAAGGCTATCCGGCTGTTGTCAGACGCTCTAGCTGAACAGAATGGAAACGCTGCAGCTTCCCTCAGTGTGGCAGAGCAATACGTATCCGCTTTCTCCAACCTGGCCAAAGAGTCTAACACCATCCTGCTGCCCTCCAACTCTGGTGACATCAGTGGCATGGTCACACAGgCTATGACTATTTACGGCAGCCTGGCTAAGCAGAGCTCAAAAAAGTTAGAAAGTGTGTCCCCAGAGTGGGCGATGGAGAAGAGTGAGGAGCTTGTACCACCAGCCCAGTAGTGAAGGATGTCAAGACCACTCAAAGCAGTCACCGAACCGGAAGCAGTGACAGACAACCATGAGGCGCCAAGGCATTGTTGCCTGGTCAGCACCACCACTGTCTGGCCCAAAGGACACACTATCTGTTGCAGATTGAAGGACATTGAAACAGGAACAGGATAAGAACATAAAGACTTGTTTAGAGGCCTGGAAACATCAACCCATTTTGGAGGATTCATGTCACTTACACATTGTTTAATTTTGATTGAGTGTTATTGCACCCATTACATACATATGTTCCAATTACAAATCCACAAGCTGTCATATTGGTACTCTTCTCTTGCATCAAATACCAAATGACTGCGATGATCGAAAACTAGTAACCTGATTTAGTGCGTTCTGTTTAAGTGCTGTATTGTTGTCTTTTATATTTCCAACTATTTGTTCTTCATATGTTTTCATTTAAATATGTCATGAATGTTTTCCTTCATGTGAGAGCTTGTGACCTTACATTAAGAGCCACCCAGggtcagaggaagcagaggagggaatATGGTCAGGTATATGAAGAGAGGTTAGAATGCAATCTTTCCTGGAATACTTTCAATTTGGCTGCATTTAGACGGGCAGACCATTCTGATCTTTCTTCTACTAATTGgtcttgaccaatcacatcagatctttttcagagctgatctgattggtcaaaagaccaattaatgAAATGAATGATGCCTGTGTAAATTATAAACTACATCAAGTTAAGTCACCAAAAGTACTTGTAAGAAAATGACCTTGGATGGAAATAGTTTGTTGAAGtggaatgttttatttcacaCCAATACCGAATGGGAAGGGGCCTCTGTTTTGGAGGAAGGTTTTGCATAACATAGCAAGTTTATTGATTTAAATGGCCAATATACCGATAATGGTCATCCACGATGATACTGTCACTATTAAAGGTATTGTGATTGACTTTAGGGAGGATTGTAACACCTCATCACAATAAATCTTGGTTTGAATGATTTGGAAGTAGA

Function

NR:

description
stomatin-like protein 2, mitochondrial isoform X1

GO:

id name namespace
GO:0042776 mitochondrial ATP synthesis coupled proton transport biological_process
GO:0007005 mitochondrion organization biological_process
GO:0006851 mitochondrial calcium ion transmembrane transport biological_process
GO:0050852 T cell receptor signaling pathway biological_process
GO:0045121 membrane raft cellular_component
GO:0005739 mitochondrion cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602568.2 True 2231 mRNA 0.44 10 35467940 35480670

Neighbor

gene id symbol gene type direction distance location
si:dkey-242g16.2 LOC106565196 coding upstream 110696 35354098 ~ 35357244 (+)
LOC110523660 LOC106565209 coding upstream 268949 35086826 ~ 35206863 (+)
adra1ab LOC106565247 coding upstream 1019148 34436786 ~ 34448792 (+)
si:ch211-127i16.2 LOC106565287 coding upstream 1320614 34107180 ~ 34147326 (+)
LOC110523649 LOC106565324 coding upstream 1378956 33846773 ~ 34088984 (+)
LOC118964586 LOC106565090 coding downstream 1558 35482228 ~ 35542795 (+)
unc13bb LOC106565090 coding downstream 65875 35546545 ~ 35595618 (+)
atp8b5b LOC106565083 coding downstream 121931 35602601 ~ 35620548 (+)
LOC110523670 LOC106565078 coding downstream 159058 35639728 ~ 35651003 (+)
si:dkey-106l3.7 LOC106563357 coding downstream 178558 35659228 ~ 35667190 (+)
G394497 NA non-coding upstream 1265 35466103 ~ 35466675 (+)
G394495 NA non-coding upstream 3073 35463819 ~ 35464867 (+)
G394485 NA non-coding upstream 24112 35442566 ~ 35443828 (+)
G394373 NA non-coding upstream 163395 35304311 ~ 35304545 (+)
G394361 NA non-coding upstream 168298 35299373 ~ 35299642 (+)
G394473 NA non-coding downstream 238 35480908 ~ 35481712 (+)
G394475 NA non-coding downstream 79855 35560525 ~ 35596524 (+)
G394472 NA non-coding downstream 116958 35597628 ~ 35599459 (+)
G394722 NA non-coding downstream 143169 35623839 ~ 35624053 (+)
G394728 NA non-coding downstream 149971 35630641 ~ 35630854 (+)
G392776 NA other upstream 1319239 34147474 ~ 34150795 (+)
G391805 NA other upstream 2106599 33360957 ~ 33361341 (+)
G391513 LOC100136561 other upstream 2304960 33158826 ~ 33162980 (+)
G390393 NA other upstream 3247407 32220181 ~ 32220533 (+)
G390184 NA other upstream 3507195 31960355 ~ 31960745 (+)
G394882 NA other downstream 424442 35905112 ~ 35905781 (+)
G394910 NA other downstream 486267 35966937 ~ 36004829 (+)
you2 you2 other downstream 552590 36033260 ~ 36034806 (+)
G395005 LOC106564805 other downstream 722231 36202901 ~ 36206616 (+)
G395034 NA other downstream 799630 36280300 ~ 36301290 (+)

Expression


Co-expression Network