LOC118964586 (LOC106565090)


Basic Information

Item Value
gene id LOC118964586
gene name LOC106565090
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 35482228 ~ 35542795 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977348.1
GACCTTTTCAGAGATTATGCTCACTCAATGGATGGACTAGATGTCATTAGAGAGTATTTCGGCGCCGCCCTCTTATCTCGGTGCCGCCCTCTTATCTCGGTGCCCTCAGGTTAGTCTAATGAATTTTATCATGGCGTGCCCGTGGCAGGGGGCTATTGCTCTCTGCCGAACCTTTATGTTTCTTTTTACAGCATCTGAAGCCCACCTGTAACAACTTAAAAAAGTGATTGGAGACATTGTTTGTAATGTTACCTGGCTGAGCGCATTTTTTCTGAGACGTTTGGTACATTTTTTTAACTAGAGGGATTGTCAGAGAAAAGCTCTTGCCATGTCTCTACTTTGTGTAAGAGTAAAGAAAGCCAAGCTACATGGATCACGGGACAAGTTCAATTCATATGTGACTCTGAAGGTACAGAATGTCAAGAGCACCACCATCACCGTGCGAGGGGACCAGCCATGCTGGGAGCAGGACTTCATGTTTGAGATCAACCGTCTGGACCTGGGGCTCATCGTGGAGGTGTGGAACAAAGGCCTTATCTGGGACACCATGCTGGGGACTGCCTGGATCCCCCTCAAGAGCATCCGCCAGTCAGAGGAGGAGGGCTCAGGGGAGTGGACCTTCCTGGACGCTGAGGTTCTGATGAAGGCTGATGAGATTTACGGCACCAAGAACCCAACTCCCCACCGGGTTCTGCTAGACACGCGCTTTGAGCTGCCTTTCGACATCCCAGACGATGAGGCACAGTACTGGACCGGCAAGCTGGATCGCATCAACACTATGAGGATCCATGATGAGtACCCTCTGCAGGATGAGGTCCAAAGACGCCCCATGCCGCTTGCTGCCTCCCAATGTTGCAACTATTTCGGATGGGCTGACACACTGACGCTGGATGACCATGACAGTGCGGTGGACGACCGGGACAGTGACTACCGTAGTGAGACCAGCAACAGCTTGCCCCCGCGCTACCACACCACGACCCAGCCCAACTCCTCCATGCACCAGTACCCCATGGGCCCCCGGCTCCAGAACCACCTGGACTCCTGCACCGACTCCATCCACAGCTTTGACATGGACTACAGAGACCACCGTGGTAGCAGGGCCCTCCACCTGTTGCAGTGTATCCTGTATTTGGGTCGGCACCAGATATTACATCAGAGAAGCCTGTGGAGGAGCCATCTTTAGGCATCCGGTGGAAAGTAGTCGCTTTGGGTCCTCTGGAAACCTGAGCCAGACCAGCTCCCAGCTTAGTGAGACAGGCCAGGAGAGTGCTCCAGGCTCAGGGCTGGAAGAGTCCTTCCACTCTTACCACAGTACCACCTTC

Function

NR:

description
PREDICTED: uncharacterized protein LOC106565090 isoform X8

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977348.1 True 1322 mRNA 0.53 11 35482228 35542795

Neighbor

gene id symbol gene type direction distance location
stoml2 stml2 coding upstream 1558 35467940 ~ 35480670 (+)
si:dkey-242g16.2 LOC106565196 coding upstream 124984 35354098 ~ 35357244 (+)
LOC110523660 LOC106565209 coding upstream 283237 35086826 ~ 35206863 (+)
adra1ab LOC106565247 coding upstream 1033436 34436786 ~ 34448792 (+)
si:ch211-127i16.2 LOC106565287 coding upstream 1334902 34107180 ~ 34147326 (+)
unc13bb LOC106565090 coding downstream 3750 35546545 ~ 35595618 (+)
atp8b5b LOC106565083 coding downstream 59806 35602601 ~ 35620548 (+)
LOC110523670 LOC106565078 coding downstream 96933 35639728 ~ 35651003 (+)
si:dkey-106l3.7 LOC106563357 coding downstream 116433 35659228 ~ 35667190 (+)
sppl3 LOC106565002 coding downstream 281418 35824213 ~ 35862626 (+)
G394473 NA non-coding upstream 516 35480908 ~ 35481712 (+)
G394497 NA non-coding upstream 15553 35466103 ~ 35466675 (+)
G394495 NA non-coding upstream 17361 35463819 ~ 35464867 (+)
G394485 NA non-coding upstream 38400 35442566 ~ 35443828 (+)
G394373 NA non-coding upstream 177683 35304311 ~ 35304545 (+)
G394475 NA non-coding downstream 17730 35560525 ~ 35596524 (+)
G394472 NA non-coding downstream 54833 35597628 ~ 35599459 (+)
G394722 NA non-coding downstream 81044 35623839 ~ 35624053 (+)
G394728 NA non-coding downstream 87846 35630641 ~ 35630854 (+)
G394731 NA non-coding downstream 89644 35632439 ~ 35632653 (+)
G392776 NA other upstream 1333527 34147474 ~ 34150795 (+)
G391805 NA other upstream 2120887 33360957 ~ 33361341 (+)
G391513 LOC100136561 other upstream 2319248 33158826 ~ 33162980 (+)
G390393 NA other upstream 3261695 32220181 ~ 32220533 (+)
G390184 NA other upstream 3521483 31960355 ~ 31960745 (+)
G394882 NA other downstream 362317 35905112 ~ 35905781 (+)
G394910 NA other downstream 424142 35966937 ~ 36004829 (+)
you2 you2 other downstream 490465 36033260 ~ 36034806 (+)
G395005 LOC106564805 other downstream 660106 36202901 ~ 36206616 (+)
G395034 NA other downstream 737505 36280300 ~ 36301290 (+)

Expression


Co-expression Network