LOC110523692 (LOC106564846)


Basic Information

Item Value
gene id LOC110523692
gene name LOC106564846
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 36085124 ~ 36120105 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977378.1
ccacgtccaggagtcttgtgtcctcggccgctgcctgtcaccacgctgcttggtcctgttgtggtgagGGATTctgtcacggcagatttcctcctcttcctctgaagaggaggtgtagcaaagATCAGACCAATATGCAGTGTGCTCTGGCGAGGGTTGTCACTGGGGAGGAAACACAAAACGCCTGGGACAAGCTGAACAAATGGGACAGCTGCCAGGACTGTGCCCAAATAATTGAACTCCTTACAGCCCTTCTCTCCAATCCAGACATGCAGACCAAGATCAGGAGCGAGCTGGAGAAACTGTGTGACCACATGCCAGGTCCTGCAGCACCTAAACTGTGCCGGGAGCAGGTGGATAAGAACCTCCCACTGTCCTTCGCCTTCTTGACCAGCTTCGCCaAACCAGCTCAGGTGTGCTCCGTATTGGGACTGTGTGGCTCCCAGTCAGAGGGCCAGCAGCATGACCTGCTGACCAATCACATTCAAGACACTCTGAAGTCAGCCATGACAATGACAAAGGTGCAGTTCGCACCACAATGTACCTTCTGCGTTTATCTCATCAAGATACTGAAGAATATGCTGCCAAAAATGGCTGTGATTGATATGCTCGGGAAGGTGTGTGGGATTCTGCCCTCATCTTACAGAGATCAGTGTAAGAACCTGATAGAGAAGTATGGTAAGAAGCTGATGGACATGCTCCTGAGCTACATCAACCCTGAGGCCATCTGCACCCTCATCCAAGTCTGTCATGGCATGGAGACGCTTGTCAGCGagagtgCTCCTCTGTCTGACTGTGACTCCTGTCTGACCCTGGCGGTTTTGACTCATCTACAACTGGGCTCCAATGCTTCAGAGCCCCAGACCGCCTCCTTCCTGGGCTCTGTTTGCCAGCTCCACCCCAATGCCCTCCCCAAGTGTGACGGCTTCACCAAGCTCCATGGCCACCAGCTTAAGGGGGTTCTGGGTAAACCAGAGTCTGCCCttaatgtgtgtgagAGGGTGGGCCTGtgtgggggagtgagagaggcaggagaacagagagaggacccATGCATTCTGGGCACCAGCTACAGGTGCAGAGACCTCAAGACTGCCCTGGAATGCGGGACAGTGTCCTTCTGCCAGAAGTTTTTGTGGAAGTAAGAACCTTCACCCAGCACCTACTCACAAAGTGGACGACTGACAATCCCAAGATTTAGAGAGCCTGCAGCCTTTGCTACGATGAATGATCCCAAAGCTTTCAACATCAAATTGTAAAAACTTGATATTTACTGTGTCAATATCAGAGAACATGTCCTGCAGACATGGGCATTGATTGCACGGAGTATTTGGCCAATGATAttttataaagctcttttgtCCTTTTATCTGCTGTACACAACAGACTCTGTATgaactccacaaagcaagtcaaTGAATTCCTAGGGCTGGGGATTTCAAGAGAATGCAATAAAGATATTGAAACTAGACATTCTTTATATTTGCTGTAAAGGTGGCCTAGAAAGGTACTGGGGAAATGATTAAACTAGGGCTGGGGTGTTGACACACCAACGATATGAAGAATTACTGACTTGCAACATGTATGCTTGCGATTTTAGCTGTACATGTAGTCATAAAATCCTTCTCAAATATATTGTTCATGCCCATTCTCCTTGTTACTGAAATGTTAAAAATAAGGTGTGATCAAAGCTAAACAACTATATCAATTTACTCAAATAATAAAAACAGTTTCCT
>XM_021602613.2
GTCTTTAAGGGAGAGACTGACTTATGATGGCATTTTTCAAGCTTGTATTCGTTGTCTTAATTGCTTACCAGACCACAGCTCTGGCGAGGGTTGTCACTGGGGAGGAAACACAAAACGCCTGGGACAAGCTGAACAAATGGGACAGCTGCCAGGACTGTGCCCAAATAATTGAACTCCTTACAGCCCTTCTCTCCAATCCAGACATGCAGACCAAGATCAGGAGCGAGCTGGAGAAACTGTGTGACCACATGCCAGGTCCTGCAGCACCTAAACTGTGCCGGGAGCAGGTGGATAAGAACCTCCCACTGTCCTTCGCCTTCTTGACCAGCTTCGCCaAACCAGCTCAGGTGTGCTCCGTATTGGGACTGTGTGGCTCCCAGTCAGAGGGCCAGCAGCATGACCTGCTGACCAATCACATTCAAGACACTCTGAAGTCAGCCATGACAATGACAAAGGTGCAGTTCGCACCACAATGTACCTTCTGCGTTTATCTCATCAAGATACTGAAGAATATGCTGCCAAAAATGGCTGTGATTGATATGCTCGGGAAGGTGTGTGGGATTCTGCCCTCATCTTACAGAGATCAGTGTAAGAACCTGATAGAGAAGTATGGTAAGAAGCTGATGGACATGCTCCTGAGCTACATCAACCCTGAGGCCATCTGCACCCTCATCCAAGTCTGTCATGGCATGGAGACGCTTGTCAGCGagagtgCTCCTCTGTCTGACTGTGACTCCTGTCTGACCCTGGCGGTTTTGACTCATCTACAACTGGGCTCCAATGCTTCAGAGCCCCAGACCGCCTCCTTCCTGGGCTCTGTTTGCCAGCTCCACCCCAATGCCCTCCCCAAGTGTGACGGCTTCACCAAGCTCCATGGCCACCAGCTTAAGGGGGTTCTGGGTAAACCAGAGTCTGCCCttaatgtgtgtgagAGGGTGGGCCTGtgtgggggagtgagagaggcaggagaacagagagaggacccATGCATTCTGGGCACCAGCTACAGGTGCAGAGACCTCAAGACTGCCCTGGAATGCGGGACAGTGTCCTTCTGCCAGAAGTTTTTGTGGAAGTAAGAACCTTCACCCAGCACCTACTCACAAAGTGGACGACTGACAATCCCAAGATTTAGAGAGCCTGCAGCCTTTGCTACGATGAATGATCCCAAAGCTTTCAACATCAAATTGTAAAAACTTGATATTTACTGTGTCAATATCAGAGAACATGTCCTGCAGACATGGGCATTGATTGCACGGAGTATTTGGCCAATGATAttttataaagctcttttgtCCTTTTATCTGCTGTACACAACAGACTCTGTATgaactccacaaagcaagtcaaTGAATTCCTAGGGCTGGGGATTTCAAGAGAATGCAATAAAGATATTGAAACTAGACATTCTTTATATTTGCTGTAAAGGTGGCCTAGAAAGGTACTGGGGAAATGATTAAACTAGGGCTGGGGTGTTGACACACCAACGATATGAAGAATTACTGACTTGCAACATGTATGCTTGCGATTTTAGCTGTACATGTAGTCATAAAATCCTTCTCAAATATATTGTTCATGCCCATTCTCCTTGTTACTGAAATGTTAAAAATAAGGTGTGATCAAAGCTAAACAACTATATCAATTTACTCAAATAATAAAAACAGTTTCCT

Function

NR:

description
prosaposin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977378.1 False 1736 mRNA 0.48 12 36085124 36120105
XM_021602613.2 True 1670 mRNA 0.47 12 36114672 36120105

Neighbor

gene id symbol gene type direction distance location
LOC110523693 ggcx coding upstream 29089 36042518 ~ 36056035 (+)
you2 you2 coding upstream 50318 36033260 ~ 36034806 (+)
slc20a1b LOC106564912 coding upstream 65770 36006206 ~ 36019354 (+)
drg1 drg1 coding upstream 118380 35963201 ~ 35966744 (+)
kcnn2 LOC106564970 coding upstream 124814 35930114 ~ 35960310 (+)
LOC110523704 LOC100136432 coding downstream 251261 36371366 ~ 36376388 (+)
LOC110523708 LOC106564755 coding downstream 338697 36458802 ~ 36469839 (+)
antxr1b LOC105014916 coding downstream 399300 36519405 ~ 36569643 (+)
LOC110523711 LOC106564742 coding downstream 487297 36607402 ~ 36614580 (+)
LOC110523714 LOC106565816 coding downstream 519551 36639656 ~ 36645198 (+)
G394904 NA non-coding upstream 49779 35943336 ~ 36035345 (+)
G394923 NA non-coding upstream 101393 35977856 ~ 35983731 (+)
G394885 NA non-coding upstream 166271 35908309 ~ 35918853 (+)
G394883 NA non-coding upstream 178906 35906011 ~ 35906218 (+)
G394881 NA non-coding upstream 182397 35902510 ~ 35902727 (+)
G394970 LOC106563191 non-coding downstream 201 36120306 ~ 36121931 (+)
G395041 nfkbil1 non-coding downstream 140046 36260151 ~ 36261227 (+)
G395035 NA non-coding downstream 162626 36282731 ~ 36288452 (+)
G395062 NA non-coding downstream 182345 36302450 ~ 36302649 (+)
G395087 NA non-coding downstream 215047 36335152 ~ 36336353 (+)
G394910 NA other upstream 80295 35966937 ~ 36004829 (+)
G394882 NA other upstream 179343 35905112 ~ 35905781 (+)
G392776 NA other upstream 1936423 34147474 ~ 34150795 (+)
G391805 NA other upstream 2723783 33360957 ~ 33361341 (+)
G395005 LOC106564805 other downstream 82796 36202901 ~ 36206616 (+)
G395034 NA other downstream 160195 36280300 ~ 36301290 (+)
G396022 kdm2b other downstream 844979 36965084 ~ 36965652 (+)
m17 m17 other downstream 1289096 37409195 ~ 37411565 (+)
srsf9 sfrs9 other downstream 1798589 37917781 ~ 37921282 (+)

Expression


Co-expression Network