LOC110523704 (LOC100136432)


Basic Information

Item Value
gene id LOC110523704
gene name LOC100136432
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 36371366 ~ 36376388 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602633.2
gctcatcctgatatttcttaatttttcTGGATTATGTGTGTAGGAGGCctattgtgtttttattttactatttttattgctaggtattactgcactgttggagctagaaacacaatcatttcgCTGTACCTGCGATAACATTTCAAAATCTGTGTACACGACCAAtataatttgttttgatttgaatttgatttgaatcaATCCTGAACACAAAAATATGAACTCTTATACATCCATTTGTCCCCACCTGGTGTTCACAACATGTAAACTTTGGATAGGCTTTGCCGCCACAGCAAGAACCACGCAGTTGTTTTGGGTTCCACTGTGATTTTGTATCACTTCTCTTTGTATGACACATACAGGCTACAGTAGCAGGCCTATGGAAAGTCCCTGAGTGGGGACAATGAGTAATATCCGTAGTGGGTGTTGGTGGAAAAGGTGTAGCAGTATGGCAATCAATTGAGTAAGCATTCCTATAAGAAGTTGTTAGCACTAAAATGGTTGAATGCATTGGACATTAGCTGAATCATGCATTGGAAGCGAATGGGATTTGCGCGTAAATTCACATTACAGCGGATTTCAAATTGCTTAGCCTAGCCTAAATGTTGATAAAATATAGAGTGAACTGAAGTCTGTATTAAATGGCTTATAACAGGGACAGAATGTGTTAATATTGTCACCGCTATGAGTGCTATGACAGGGACGAATAGACTATGTGCGGTGATCCATGATAAATAGATCCCTCCCTTCTGGATGAAAGCAGTGAGTGAATGACAGAATCATAACAGAAACAGTTAGATTGAAAACACTACTTTCTTCAAAAGGAACAGAATCGTCTCGAATCAGCAAGGGGCATTCATCATGGGGAAGCTATGTGAGCTGGCCTTTGTGTCTCTGGCCCTCCTGGCTCTACTTCATACTGACTCTACATGGGCCAAGAGAAGtgtcagcagtagcagcagcaaaaaGTCTTCATCCAACAACAGGGGTTCAGAAAAAAAGCCATCAAAAACATCAAACACGCAGACAGGAAGCTACCCCAGACAACCACAGAGCCCCAACAGGAACCCCAACTCATACCCAGCAGGAGGTAGTTATCCAGGAAGAGGTACCAATCAGAACCAGAACCCAGCCGGTGGATACCCTGCTGCAGGTGGCTATCCTGCTGCAGGTGGCTATCCTGCTGCAGGTGGCTACCCCAACCAGCAGTATCCAGTCAGAGCCAATCCTGGGGGAAATCCAAACCAGAACCCTGCAGCTGGAGGTTACCCAGCCGCTGGTGGCTATCCTGCAGCAGGTGGCTATCCCAACCAGCAGTATCCAGGCAGAGCCAATCCTGGGGGATATCCAAACCAGAACCCTGCAGCTGGAGGTTACCCAGCCGCTGGTGGCTATCCTGCAGCAGGTGGCTATCCCAACCAGCAGTATCCAGGCAGAGCCAATCCTGGGGGATATCCAAACCAGAACCCTGCAGCTGGAGGTTACCCAGCCGCTGGTGGCTACCCTGCAGCAGGTGGCTATCCCAACCAGCAGTATCCAGGCAGAGCCAATCCTGGGGGATATCCAAACCAGAACCCTGTAGCTGGAGGTTACCCAGCTGCTGGTGGCTATCCCAACCAGCAGTATCCAGGCCGGGCAAATCCTGGGGGTTATCCAAACCAGAATCCAGCAGCGGGTGGTTACCCTGCAGCAGGAGGCTACCCCAACCAgaacccagggagaggaggagtcaATCCGGGATACCCAGCTGGAGGTTACCCAGTAAGAGGGGGAAATACTGGCAGGGGGCAGGCAGGGGGCTACCCTGgtagagggatgggaggaggttACCAACCCAACTGGAACCCAAACAATAAGATCCTCAGTCCCCGCTATGGTTATGGAGGTGGGCATGGGGGTATGGGAGGTGGCTCTCCATTCTCACGCTCAGTTCAGAATATGGGGCACTACCCATCTACTCAGTCCAAGGGCTTTGCTAAGAAGGCTCTTATGGCCGCAGGGGTTGGGGCCGTGGCAGGTATGGCAGTAGGCTATGGCCTTGGGCGTTTCCCCCGCCCACATTTCAACTTCCGCAACCCTCAGGAGGAGCAGTCCTACAACAACTACATGTACAGCAAATACGGTGAACGCTCCACAGAGGAAAACGACTATGGCCGGGACTATACCTTCAAAGTACCACCGCGGGCAGAGTCCTACGACAGCTTCATGGATACCTGCATGAAGAGGAACGACCTTCTGCAGGATCAGGGCAGCGACTCCCAGGCCACACCTAACAACCAGAGGAACAACCCCCAGGGAGCCAACAGCCAGAGCCTGCCCATCACTCCTGAGGTGGGGAACAGCAGTCCAGCTAGCAACCAGGAGGGAACAGACACAGTGAAGCCCCTCACCCCAGCCCCAGTGGAGATAGCTGGAGAGGATACGGGTAAGGAGGAGGATGACGGGCTCACAGTGAGCATTGAGGAAATTGGCTACCCTGCATTGGTGGAGCAGCTGAAGAACCGTAAGTGTGTGGAGCTGTACATGAACTACTCTGAGCGTTTCCTGGAGAAGCAGACAGCTGAACGTAGCAgcgacagcaacaacaacaacaacaacaagtatgAGAACAGTCGCAGTAACCTCCTTAGCCAGGGGCTGGTACAACTGATAACCACCTTCCTCATGGTCCTGAGCAGCACTCTCCTGCTGCAGTAAGACAGGAACACATAGCCATGTCCCAGTTGTATGGAATAGCTTCATTTCCTAGTCACCCCTCCTCAATATGCCACTGATTTCTTGTGAGGATAGGTTAATTAAACAAGGTGTAGGTGGAGATATAACCAATCCTTTAACTAATCTGCGGTCATGAAGGAAAGGGGACAAGGAAAGGAAGCCAGTGGAAAATAACTTCCAGTGAACTTCCAGCAAAATGAGGACCAAtaaaaatatgtactgtagggggtactcgaggaccggagttgggaaccactgctgtacaTGATTCTTCACATGGTATTTGTACTTTAAGTGTTCAATATCTCAACACTATTTCTAAAATAAACCGAAACCATCTGTCCTGCTTGTCTCTTACAGCTTAGTTCAGTCTACTGCTAAATATGGAATAACAGCATTTTGTCTGTAAGTCCCAAACCATGAGTCAGTCGTGTAGACAAAGGGGAAGTATAAAAGCAAAAGTAGCAAGTCTCATCAGTACACCATATGACTTTAATTAAATGCAGATACACTAGATTAACAAACATTATTACAGCACCTTTTTGCCACCATATGAGGTACTATCATCCGATTAGGGGTTCAGTATCTTTTTGCCAAAGTGGTTCCACAGAAAGCACAGACAAGCATTATGTTGACCGTTTGTCATATTAAATCCATTTTATTCATGCATTTCCGTGTGCGTTATACTGtacatcagtggttcccaactccaaacccacaaccacacacatttttgttgtagccctggatAAACATAAcggattcaactcattgagggcctgatgattagttgacaagttgaaacaggtgtgcttgtccggggctacaataaaaatgtgtactgttggggctATTGGAGGACCGGAGTTTGGAACCACTGCTTTACATAATAGTTCACATGATATTTGAATTTGTACTCTAAATGTTCAATCTTATGTGGTCtgcagtatttggttttaaaagtTACCTGTTTTGTAAATACTTATAATAATTAAGTAGGGAATGGTCAGAGTTTTGTTATTAATCAATCCCTATTTCTGTTCCTATTTTTATTTTGTGCTCTCTTgtcccatctctctacctccccatctagtctccctctccatgtcctcCTGTCCCCTGGTTATCTGAAGTGCACTTATTTCTCTTGGCGAATAGATATAAATGACTCttctttttccttttttttcaaGGATGTATTTAGTGATTAACTCATTTATATTGGTTTTAACATAGAGAACAACATGCATTGTTTTAATGTGTCTTTAAAATAACCACTTTGTCATGCTCGAACTCAATGGGGAATTTTACCATTAACTTGCTGAAATGACTGATGTCTTCTTCCATTTCCCAAGTACAGAATGACtaaaaacaaatttaaaaaaaacacaatcgcaCTTCCTTTTGTGCTCATTGAAAATGTGCGGTCATTCTCGTCTAGGAAAACACGAGGGCAGTTACCATGATTATCTCACAGAGCACATATAAGCTTTTAAAGACATATGTTACTAGGAAACTAGTTGCCTCAGGGAAATTGTTACAGAACAGTCATTACTGAGTGAGGAAATCGAACAGACATGGTTTGTACCTGCCAGTTGGCAGCGTTACCATTCCCATACTGTTAAATGAATAATGATAATTAAGCTATCTTTACAACAGAGCACAAATACCTAAACTCATCTCATTCACTAAAAATATGTATTTGATTATGAA

Function

NR:

description
uncharacterized protein LOC110523704

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602633.2 True 4428 mRNA 0.45 2 36371366 36376388

Neighbor

gene id symbol gene type direction distance location
LOC110523692 LOC106564846 coding upstream 251261 36085124 ~ 36120105 (+)
LOC110523693 ggcx coding upstream 315331 36042518 ~ 36056035 (+)
you2 you2 coding upstream 336560 36033260 ~ 36034806 (+)
slc20a1b LOC106564912 coding upstream 352012 36006206 ~ 36019354 (+)
drg1 drg1 coding upstream 404622 35963201 ~ 35966744 (+)
LOC110523708 LOC106564755 coding downstream 82414 36458802 ~ 36469839 (+)
antxr1b LOC105014916 coding downstream 143017 36519405 ~ 36569643 (+)
LOC110523711 LOC106564742 coding downstream 231014 36607402 ~ 36614580 (+)
LOC110523714 LOC106565816 coding downstream 263268 36639656 ~ 36645198 (+)
LOC110522857 NA coding downstream 273560 36649948 ~ 36651750 (+)
G395110 NA non-coding upstream 2394 36368683 ~ 36368972 (+)
G395109 NA non-coding upstream 3558 36366615 ~ 36367808 (+)
G395087 NA non-coding upstream 35013 36335152 ~ 36336353 (+)
G395062 NA non-coding upstream 68717 36302450 ~ 36302649 (+)
G395035 NA non-coding upstream 82914 36282731 ~ 36288452 (+)
G395119 NA non-coding downstream 9362 36385750 ~ 36401357 (+)
G395124 NA non-coding downstream 26076 36402464 ~ 36403209 (+)
G395133 NA non-coding downstream 29149 36405537 ~ 36405748 (+)
G395140 NA non-coding downstream 38702 36415090 ~ 36415453 (+)
G395141 NA non-coding downstream 40306 36416694 ~ 36416926 (+)
G395034 NA other upstream 70076 36280300 ~ 36301290 (+)
G395005 LOC106564805 other upstream 164750 36202901 ~ 36206616 (+)
G394910 NA other upstream 366537 35966937 ~ 36004829 (+)
G394882 NA other upstream 465585 35905112 ~ 35905781 (+)
G396022 kdm2b other downstream 588696 36965084 ~ 36965652 (+)
m17 m17 other downstream 1032813 37409195 ~ 37411565 (+)
srsf9 sfrs9 other downstream 1542306 37917781 ~ 37921282 (+)
LOC110523777 LOC106563114 other downstream 2937946 39297942 ~ 39317727 (+)
G399169 gpat3 other downstream 3385728 39762116 ~ 39765843 (+)

Expression


Co-expression Network