LOC110523708 (LOC106564755)


Basic Information

Item Value
gene id LOC110523708
gene name LOC106564755
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 36458802 ~ 36469839 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602648.2
CAGAGGCCGCCTCCTCACCAGCCCCTTCCTTTCCCACAGTAAACAGGAAGACTGAGCCAAGTCAGAccggagaccagagagaggagccaaACACTCAGGAGAAGGAGGATGTCTAAATAGCTGCAAATCCAGCATAAACAAAAGAGAAGTCTGACAAAAGGAATGAACATAAGGAGTAAGAATCACAGAGAGGTGGAGAAACTCCAGTTAACGTCTCAATACACCGTTGAGGTGGAGAAATCCGCTAAGAAAAGTTTTAAATATAGAGAGGGGGAGCTTTCAAAGCAAACAACAAAGGAAAAGCCTAGGCAGTCTACTATGGCTGGGCAAGTATCCAAGAGCTCAGCACAGCGACTCAGCCGAGACCTGACCTGTTCTATCTGCCTGGACCTCTTCAAGCAGCCTGTCTTTCTGCCCTGCGATCATACCTTCTGCCAGGCATGCATCGCTGGCTACTGGGGGGGCCCCAGAGGCCAGGTCCAGGGGGGGTCTGGATCCTGTCCACAGTGCAGGAAGGTATTCCCTGGCCAGAGCTACCGGCCCAACCGCATCGTGGCCAACATAGTGGAGAGCTACTGCCAGGGCCTGGAGGAGAGCGGGGGGCTGCCGGGGGACATGGGGGTACCAGAGAGGAGCTCTGGCCCTGCTCCTGCCCCACGCTGTGGCCGGCACCGAGAGGAGCTGAAGCTCTACTGTGAGGAGGACCAGGAGctggtgtgtctggtgtgtggaCTCTCTCAGGAGCACAGGAACCACACCATGGTGTGTGTCCAGGAGGCACAGCAGAGATACAGGGCTTCTCTCAACAGCTCCATGGACTCTCTGAAAGGGGAACTGAACATGGCCctgcagtgtgagagagagactgaggaggaggTCAAGAAGCTCAAGGAGCACACGGCGGACCTGAAGCAGCGTATCGAGGCCCAGTTCAGCGACCTGCACCAGTTCCTTtaccaggaagagaagctgctgcagGTGAAGCTGAAGACAGTGGAGCGCATGGAGCTGATCAGACTGGACGAACATAAGGCCTTGCTCTGTGTGGAGGTCTGCCGTCTGCAGAGGGCCCTGAACGAGATCGAGGACAATCTGAGGGTGCAGGACCCCTTTACACTGCTGCGGAATATCAAGACCCTGCTCCAGAGGCCTTCTCCAAAGTTTGAGAAGCCTACCCTCACGGCTCCCAGTCTGTGTGAGGGGCGGTTCGCAGGGCCCCTGCAGTACCGAGTGTGGAAATCACTGAAAGGAAGCATCTACCCAGTTCCAGCTGCCATCACCTTAAACTCAAGCACGGCCAACCCGTGGCTCAGCCTGACCTCATCCCTCACCTGTGTCCGCTACCAGACCTTCAACCACTCTGTCCAGGACAACCCTCACCGCTTCAACGCTGCCCTGTCTCTACTGGGCAGTCAGGGCTTCACCCATGGCCGCCACTACTGGGAGATAGAGGTCTACAGCAGCACTGTGTGGACCGTGGGGGTAGCCAGAGAGTCTGTATCCAGGAAGGGGGTCATCAAAGCCCTGCCAGCCAATGGCTTCTGGACCCTGTCCTTATCCTATGGAATACAGTACATGGCCTGTACATCACCCCCTACTGTCCTGTCACTTGAGGAGCCTCTGGCTAGGATAGGGGTGTATCTGGATTATAAGAGGGGTCTGGTGTCTTTCTACAATGCAGAGAGCATGACTCATCTCTATACCTTCCGTGAAACCTTCACAGAGACGTTGTACCCCTACTTCAATCTGGGATTCCTGGATAAAGTGCATGAGAACGAGCCCCTCAAAGTTTTCCTTCCCAAAATCTGACAGCCGCATCTACACATCGCAAAGCCTGAGGCGAGCCTTATACTGGTGCTAAACCTCCCTCAGAGTATAACCGTCAGATAATATGCAACATAAAAAAACGGACACAAAATACTACCATATTGTTTTGAGATGTTAACGCGTAAGTAGGCCAACTGTTCAACTTCAGAAATGTCTCAATATCTTACTGAAGTCATCTTGATGGGGGTCAGTGAACTTCAGCATCAAGGTTTGTTTAATGTTTTTGTCATCATTATTATTAATCCACAATAACCTTTTGTAATATTACAGCGTTAATTTGTACGGGCCTGGTGTTAACTGAATGATGAATACAAAATTGCCTTATTGTTTACAATGTACGGCAGTTCAGTATTTTGAGACAAAGGTGCGCCAATTATTTGGATAAGTAATTTTCAATGCATGATTATACTTTTCATGTAAATGTTGGATATCGTCAGTACACTGCAAGATATTGTTCAAAATAAACACTAACTTGTTTTGTG

Function

NR:

description
zinc-binding protein A33-like

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K12009 TRIM27, RFP; tripartite motif-containing protein 27

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602648.2 True 2309 mRNA 0.51 6 36458802 36469839

Neighbor

gene id symbol gene type direction distance location
LOC110523704 LOC100136432 coding upstream 82414 36371366 ~ 36376388 (+)
LOC110523692 LOC106564846 coding upstream 338697 36085124 ~ 36120105 (+)
LOC110523693 ggcx coding upstream 402767 36042518 ~ 36056035 (+)
you2 you2 coding upstream 423996 36033260 ~ 36034806 (+)
slc20a1b LOC106564912 coding upstream 439448 36006206 ~ 36019354 (+)
antxr1b LOC105014916 coding downstream 49566 36519405 ~ 36569643 (+)
LOC110523711 LOC106564742 coding downstream 137563 36607402 ~ 36614580 (+)
LOC110523714 LOC106565816 coding downstream 169817 36639656 ~ 36645198 (+)
LOC110522857 NA coding downstream 180109 36649948 ~ 36651750 (+)
ggt5b ggt5 coding downstream 327524 36797363 ~ 36805752 (+)
G395165 NA non-coding upstream 2349 36456253 ~ 36456453 (+)
G395157 NA non-coding upstream 17046 36441435 ~ 36441756 (+)
G395145 LOC106564765 non-coding upstream 28468 36425712 ~ 36430334 (+)
G395142 NA non-coding upstream 40880 36417720 ~ 36417922 (+)
G395141 NA non-coding upstream 41876 36416694 ~ 36416926 (+)
G395184 NA non-coding downstream 14156 36483995 ~ 36484221 (+)
G395641 LOC106565823 non-coding downstream 38194 36508033 ~ 36508278 (+)
G395672 NA non-coding downstream 103900 36573739 ~ 36577200 (+)
G395677 NA non-coding downstream 112933 36582772 ~ 36585879 (+)
G395034 NA other upstream 157512 36280300 ~ 36301290 (+)
G395005 LOC106564805 other upstream 252186 36202901 ~ 36206616 (+)
G394910 NA other upstream 453973 35966937 ~ 36004829 (+)
G394882 NA other upstream 553021 35905112 ~ 35905781 (+)
G396022 kdm2b other downstream 495245 36965084 ~ 36965652 (+)
m17 m17 other downstream 939362 37409195 ~ 37411565 (+)
srsf9 sfrs9 other downstream 1448855 37917781 ~ 37921282 (+)
LOC110523777 LOC106563114 other downstream 2844495 39297942 ~ 39317727 (+)
G399169 gpat3 other downstream 3292277 39762116 ~ 39765843 (+)

Expression


Co-expression Network