LOC110523714 (LOC106565816)


Basic Information

Item Value
gene id LOC110523714
gene name LOC106565816
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 36639656 ~ 36645198 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602653.2
gctctctctttccatATCAGCATCAGTGGCTCTGCAACTGTGTACTCACCACTGTTCAGGAAGGATATGAATGTGTCGAGAGCGCACTTGACAGAGGTTCTCAGTCTTTCAAGGAGTTCCCTTCTCCTTTTGCTCATCAGCACTTGAGGGTAAGGTGCTAAGAGGCTGCTACCCAGGGCTCCCTATTGCTGTGCGGTTAATCAGATACAGTATGGACGGCAGTGGCAGTGGCTGGACTGGAGGTCTGCTGCCCTCTGTTAGCGAGAAGACAACAGAGGAGCACTCGGTCTTTGAGATGGCTGTTCAGAATGACTCGGCCAACCACAGCTCCCTGTTTGCAGACGTGGCTCTGCTGCAGAGCTTCAAGCTGCTCATCATCCCCTGCTActccctggtggtggtggtgggtgtgttGGGGAACTACCTGTTGCTCTACGTCATCTGCCGCACTCGCAAGATGCACAATGTCACCAACTTCTTCATAGGGAACCTGGCCTTCTCAGACATGCTGATGTGTGTGACCTGTGTACCCTTAACCCTGGCCTATGCATTCAACCCTCGTGGCTGGGTGTTTGGGAGGTTCATGTGCTACCTGGTGTTCCTGATCCAGCCGGTTACCgtctatgtgtctgtcttcacCCTCACCGCCATCGCTGTTGACAGGTACTACGCCACTGTGCATCCTCTGAAGAAGCGTACCTCTGTGTCCACCTGTGCTTACGTCCTGTCAGGGATCTGGCTGCTGTCCTGTGGCCTGGTGGCTCCGGCCGTGGCCCACACGTACCACGTGGAGTTCAGAGAGGAGGGCCTCACTATCTGTGAGGAGTTCTGGCTgggacaggagaaggagaggctAGCCTACGCCTACAGCACCCTGCTGGTTACCTATGTCCTGCCACTCTCCGCTGTCTGCACCTCCTATCTCTGCATCTCTTTCAAGCTGAGGAACTGCGTGGCGCCGGGACATCGGTCCCGAGACCAGGCAGAGGCACAGCGAGCCCGAAAGCGAAAGATCTTCCGTCTGGTGGCATTAGTGGTGGCGGCCTTCGGGGTGTGCTGGCTGCCCATCCATGTGTTCAACGTGCTGCGTGATATCGATATCCGCCTAATCAACAAGCGCCACTTCCTGCTCATTCAGCTGCTGTGCCACCTGTGTGCCATGAGCTCCTCCTGCTGTAACCCCTTCTTGTATGCCTGGCTGCACGACCGCTTTCGTGCTGAGCTGCGCAAGATGTTCACCTGCCACCACCGCATCGGCATCCCCACCAACCACTGTGCTATGGCCAGTGTGGTCCTCTGACTGTGCAGGGACAAGGAGATAGAAGAGACACAAGACCTGTGATACCTGTGTAAGCATGTTGTAGGTCCAATTTCCTGATAATGTTCATGTTTGTTGGTGACCTAATGTAGACATAACAAGAGATCATCATGAACAATACAGGAAATCTTGGAATTACAGCTGATTATAGAGATATGAGGTGGTTTCCTCATTGTTCATAGGTAAATCAATTGAACACAAATTCGGTGATTGACGAAATAATCATTAAATTAGCAGATTGAACAACAATAAGAAGAAGGTGAAATTCAAGAGACAAAAAGAGCAAGAGACGAGGGACGAGAgatgagagacgagagagagggagagagggagggaaagaggga

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004983 neuropeptide Y receptor activity molecular_function

KEGG:

id description
K04314 PRLHR, GPR10; prolactin releasing hormone receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602653.2 True 1662 mRNA 0.53 3 36639656 36645198

Neighbor

gene id symbol gene type direction distance location
LOC110523711 LOC106564742 coding upstream 25076 36607402 ~ 36614580 (+)
antxr1b LOC105014916 coding upstream 70013 36519405 ~ 36569643 (+)
LOC110523708 LOC106564755 coding upstream 169817 36458802 ~ 36469839 (+)
LOC110523704 LOC100136432 coding upstream 263268 36371366 ~ 36376388 (+)
LOC110523692 LOC106564846 coding upstream 519551 36085124 ~ 36120105 (+)
LOC110522857 NA coding downstream 4750 36649948 ~ 36651750 (+)
ggt5b ggt5 coding downstream 152165 36797363 ~ 36805752 (+)
lrrc75bb LOC106564666 coding downstream 183278 36828476 ~ 36883225 (+)
LOC110523723 rnf34 coding downstream 286539 36931737 ~ 36957641 (+)
LOC110523726 LOC105014888 coding downstream 383033 37028231 ~ 37032623 (+)
G395677 NA non-coding upstream 53777 36582772 ~ 36585879 (+)
G395672 NA non-coding upstream 62456 36573739 ~ 36577200 (+)
G395641 LOC106565823 non-coding upstream 131378 36508033 ~ 36508278 (+)
G395184 NA non-coding upstream 155435 36483995 ~ 36484221 (+)
G395165 NA non-coding upstream 183203 36456253 ~ 36456453 (+)
G395748 NA non-coding downstream 50010 36695208 ~ 36696447 (+)
G395888 NA non-coding downstream 98374 36743572 ~ 36748524 (+)
G395972 NA non-coding downstream 225620 36870818 ~ 36871028 (+)
G396058 NA non-coding downstream 360455 37005653 ~ 37036550 (+)
G395034 NA other upstream 338366 36280300 ~ 36301290 (+)
G395005 LOC106564805 other upstream 433040 36202901 ~ 36206616 (+)
you2 you2 other upstream 604889 36033260 ~ 36034806 (+)
G394910 NA other upstream 634827 35966937 ~ 36004829 (+)
G394882 NA other upstream 733875 35905112 ~ 35905781 (+)
G396022 kdm2b other downstream 319886 36965084 ~ 36965652 (+)
m17 m17 other downstream 764003 37409195 ~ 37411565 (+)
srsf9 sfrs9 other downstream 1273496 37917781 ~ 37921282 (+)
LOC110523777 LOC106563114 other downstream 2669136 39297942 ~ 39317727 (+)
G399169 gpat3 other downstream 3116918 39762116 ~ 39765843 (+)

Expression


Co-expression Network