LOC110523739 (LOC104958930)


Basic Information

Item Value
gene id LOC110523739
gene name LOC104958930
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 37384835 ~ 37390026 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602704.2
AGGAGAGAAGGAGTGCAACCATCTATCTTTGacattttcctcctcttcttcttgtcTTGATTGTCTGTGATAGGCATGGCATAATTCACCCTTCCCACCGGATCCATTTGGTTCCTCCTCCTCAGGAAGTGGAGACGCCAGAGACAAGGACTGCCTTCAGCTGCTGCCTTTCTGACGGTGCCTGCGATCGCTCTGCGATGCCCTGTTCATTTCTAGCGAGGAGCTGCAGGCAGTAGCGAGAGACCACGCAGGGGAAGGATGCATTTAAAGCAGGATGTGTGCTGGATGCTGGGAGACACGGCAgcgatagcagcagcagcagcgagcACGGAGGGCCTGGGAAGcgcccaccccctctctctcctccttttcctcccccCCTGCAGGACCATGCTTGCGTGAGGGATGAGGCTGTGCACAGGGACGCCAGGCCAGAGCTGCGGCCTACTTCTTCTCACAAGAGCCGGGCCCTCGACTGCAAGATCTGTGAACGCTTTGCCACCATCAAATCAGCATCTTTGGTCACCAGGTAGATCCAGGAGCATGAGCAGGACTCTGAGCTGCGGGAGCAGATGTCTGGGTATAAGCGCATGCGGCGGCAGCACCAGAAGCAGCTGATCGCCCTGGAGAACAGGCTGAAGGCGGAGATGGACGAGCATAGGCTCCGGTTGCAGAAGGAAGTAGAGACCCACGCCAACAACACTTACATTGAACTGGAGAGACTGGCTAAACGGCACACCGTTCACACAGACAAAGAGATAAAGGCAGCTacagcagaggagaagaggatccAGCAACAGATCATTGCCCAGCAAAAGAAGGAGCTGACCACCTTCGTAGACAACCAGAAAAAGGAGTACAGGCTCTGTAAAGACAAGATCAAAGAGGAGATGAATGAGGAGCCCAGTACGCCCAAGGAGGAGAAGCAGGAGCGTCTTTCCAGGCACAAGGAGACGGTGCAGCGCTCACAGGCTGAGGATGAGGCCCACCTTCTGGACCAGCAGAGGCTGGTCTATGACAGGAGCTGCCGTGCTCTGAAACGCAGGACACTGGTCAAGAGGCACGAGTTCGAACAGGAGCAAATGAGAGAGGAGCTGAATAAGAAGAAGACCCAGAAGGAGATGGAGCAGGCCCTGATGATCCGACAGGACGAGTCCACTCAGGAGCTGGAGCGCAGGCAGCTGCAGACACTGCAGAGGCTCCGTGTTGAGCTGATCTTCCTGCAGCACCAGACCGAGTTGGAGAACCAGGAGGAGTACAATGGCCGGCGGCAGAGAGAGCTGCACAGGAAGCACGCCCTGGAGCAGAGGCAGCAGCCCCGGAACCTCAAGATGTTGGAGATGCAGATCAAGAAACAGTTCCAGGACACGTGTAAGGTGCAGAACAAGCAGTACAAAGCCCTGAGAAACCATCAGCTTGAGGTCTCTCCTAAGAGCGAGCACAAGGCCATCCTAAAGTCACTGAAGGAGGAGCAGACACGAAAGCTCGCTGTGCTGGCCGAGCAGTACGAGCAGAGCATCAACGAGATGATGGCCTCACAAGCGATGCGTCTGGAGGAGGAGCAGGAAAGGGAGTGCCAGGCGTTGAAGCAGCAGCTTCAGCAGGAGATGGAGCTCCTGGATGCCTACCAGAGCAAGACCAAGGCCCAGACAGAAGCCCAACACGAGAGGGAGCTGCAGATGCTGGAGCAGAAGGTCTCCTTACGCAGGGCCCACCTGGAACAGAAGATTGAAGAGGAGCTGGCCTCACTTCAGAAGGAACGCACTGAAAGGATCAAGCAGCTTTTTGAACggcaggagagggagatggacgCTTTCAATGCAGAAAGCGCTAGGCTGGGGTTTGGGAGCTTAGGATCGCTGGACTTCCCCAAGGAGGACGACAGATGAAAATGGATGTGGTTGTGGAGGACTAGACTCTTTCCTTCTGGTGTATGGTGTAGGCATGTGCCTGCATTCTCACGGTCAACTTCACCATGGCCATCTCTACAGTGATAACGCTGGataaccctctttctctcttcctctctagagTCTTTTAGATACCACATCACAGCATAGAGCGGTCATTTGCCATGGGAACTACTTTTGTTAAACTTTAGAAAAAGGGGAAAATTAAACAAGATTAATTCACAACACAAGTTCAACCAAGTGTGTGTAACTCAAAAGTCTTGCGTTGGAGATTACAAGAATAGAAtacttatataaaaaaaataagaactGACTCTTTCCTCCATGCCATCATCCTCCTTTTGGTATGAATTCAGGAAATTCAGGAAATTTTAGTAAAAATTAGCACTTTGATATGTTTAAGTATTAACCCATCATGTTCATATGACGCTTAATGCGTATGTCACATGGAGGGGCATTGCGATTGTGGAATGTGAGCTGCGGACTACACCGTGGTGTTTAgctgcttctttttttttttgtctcacaGAATGTGATTAATACTATATGTGAATACTGTAAGCTTAAAGAAGGTATTGAGACAGTGTCAGATCTTATATTTAAATTAGTTTTAAAGAGAGATTTTACTTCATTCCATATTGTGCTAAAGCATATGGTCCTTCACTTTTTAAACAACTCCGGTACTTTATTTGTTGTTGTTCAGTATTTAGGATTTATTGGCATCAGTTTGATCAAGCTGTGTATTTTATCAGAATGATTCAACTCCGTCAAACTGGTTATTATTGCATGCACTTTAAAGACACATTCAGGTTGTGAAGTGATGCATGACTCTGTCCAGAGATTTTAGCCGTTTGTAAATAAAAGTGGTCATTGCATTTTTTGTTTTAATCCCCATTGACAAGCGCCATATTTGATATGAAAATGTCACAAATGCCTTTATTTAAGTTGTGCCTATGAAGCGGTTTTGATTTGTCGTTGTTGTTCTTTCATGTTTGTTTAGCACGGCCAATACCATTGATTGTTCCATCCAAATTTGGGAATCATTTAACGTTCACCAATCAAAGGTCTTGTCAAGGATAATGGTGAGAATTGTGCTGTATAACTTTTgatataaatatttgtatttgAGGACATAAATAGGAGATACAGAAGCATTGGTCGATTACTAATGACGGAACTTCACATTATACttagaaatatgtttttttcctTGGTAATGCGGTAGGTCAAACATACTGAAAACTCAAATCACTGAAGACTTTTATCAgattgta

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602704.2 True 3184 mRNA 0.48 8 37384835 37390026

Neighbor

gene id symbol gene type direction distance location
LOC110523745 hspb1 coding upstream 8492 37374494 ~ 37376343 (+)
LOC110523733 LOC106564357 coding upstream 26311 37334100 ~ 37358524 (+)
myo1hb kctd10 coding upstream 98511 37270393 ~ 37287020 (+)
iscub iscub coding upstream 223513 37157288 ~ 37161322 (+)
LOC110523741 LOC106564493 coding upstream 248167 37134748 ~ 37136668 (+)
m17 m17 coding downstream 19169 37409195 ~ 37411565 (+)
LOC110523748 LOC106564295 coding downstream 130519 37520545 ~ 37549069 (+)
LOC110523751 NA coding downstream 178988 37569014 ~ 37572805 (+)
LOC110523753 LOC106564257 coding downstream 201147 37591173 ~ 37604425 (+)
trnaa-ugc-12 NA coding downstream 216151 37606177 ~ 37606250 (+)
G396591 NA non-coding upstream 5448 37379153 ~ 37379387 (+)
G396590 NA non-coding upstream 6536 37376808 ~ 37378299 (+)
G396151 NA non-coding upstream 176804 37207826 ~ 37208031 (+)
G396150 NA non-coding upstream 177078 37207479 ~ 37207757 (+)
G396602 NA non-coding downstream 28918 37418944 ~ 37419346 (+)
G396666 NA non-coding downstream 65872 37455898 ~ 37456191 (+)
G396731 NA non-coding downstream 164586 37554612 ~ 37554811 (+)
G396735 NA non-coding downstream 166225 37556251 ~ 37556557 (+)
G396022 kdm2b other upstream 419183 36965084 ~ 36965652 (+)
G395034 NA other upstream 1083545 36280300 ~ 36301290 (+)
G395005 LOC106564805 other upstream 1178219 36202901 ~ 36206616 (+)
you2 you2 other upstream 1350068 36033260 ~ 36034806 (+)
G394910 NA other upstream 1380006 35966937 ~ 36004829 (+)
srsf9 sfrs9 other downstream 528668 37917781 ~ 37921282 (+)
LOC110523777 LOC106563114 other downstream 1924308 39297942 ~ 39317727 (+)
G399169 gpat3 other downstream 2372090 39762116 ~ 39765843 (+)
G399919 NA other downstream 3051729 40441755 ~ 40442086 (+)

Expression


Co-expression Network