LOC110523748 (LOC106564295)


Basic Information

Item Value
gene id LOC110523748
gene name LOC106564295
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 37520545 ~ 37549069 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602716.2
GAGAAAAACAAAATGAGACCGCAGTGTGCAGAGCAGACGGCTCGAGGAGGATCAACCTCAAAGATCCATCTGAAGACGCAGTGGGTCGCCCAGGAAATCCCTTGACAGTTGAATATTTTGACTACTCTAGTTCTTAGTTTTGATGTTATTtcgttttttttgtcttgttttattTTAAATGAGAACGTTACAGACGAACATCTCTTCAATAGGCTTCCGGTAGAAGCTTTTGGGGGCTATTAGTTAGGCTACTTACAGTTTTATCGACTGTTCTCCAGAAGTGAAGATAAAGGAAACGGAAAAGGAAAGTGTGAGGAGACGGAAGGCAATACATACCTTGTACAAAACAACGACCTGTAGGatttaaacaaaaaatatatatgttcatGTTAATCCTATCAAACAGAAAATAGAAGTCTTCAGTCTAACACATCTGAAATGACATGCATTTCAAAGCCAGCGCAGACTTAAACTGCTCTCGAATTGGATTTGTAGTTGAcacgtttttttatatatatctcgttgtagtttatatttttgtatcaTTATTTTATTCCCATATATGCGGAACAAAATATCTTGCAATGTGCGGATTAAAATAGTTGGTTTTGATGTAACAAAGATATTTGCTATGTTTATTTGAGACAATAAAATAGATAGAATTACGACCAAAAATAAAGTTTCAGCAATATATCTAGTAGGCCTACTTGTGTCCTTCGGTAATTGTAATGCAAAGTTGATGTGACATATTGGCTACACAAGCACTCTTGATGTATAGGCATTACATGCATTGAAGACAAAAGCAGAGACACCTGCCACTTTGTCCGGGACTTCGCGAGCTTCGATTCCGACACTGTTTTCTCCACAGGCTACACCAAAAAACAATAACGGTCAAGTGACAGAACCTGAACAGAGATCTTTTTTTCCGGTTGCAAAATGTTGTTCTCCAAAGTGGACTATAGCAAAGTTTCGGTCAGCAAACTACAGTGAGCTATATGAAGATCGAGACACAGATTTTCCCTCGCAGAAATGCCAGTGCGAATGCCAGTGCGAACCACAAGGTTCATGTACAAGGGAAATTGCACTATTCCAGATATCCTATCATACCGGACCCCCATTAACCTGCCCGAGGATGAGGTGGAAGAGATCCGTGAAGCCTTCAAGGTGTTTGACCGAGATGGAAACGGATACATCTCAAAGCAGGAGTTGGGGGTGGCTATGCGGTCACTGGGATACATGCCCAATGAGGTGGAGCTGGAGATCATTATCCAAAGGCTGGACATGGATGGTGATGGCCAGGTTGACTTCGAGGAATTTGTTGCACTGCTTGGACCTAAACTTATTGCTGCTGGGATGCCTGATAAGTTCCATGGGGCGGACTTTGACTCAGTATTTTGGAAGTGTGACATGTCGAAGCTGACAGTGGATGAGCTGAAGAGGCTACTGTATGACACCTTCTGTGACCACCTCACCATGAAAGACATTGAGAACATCATCATGACCGAAGAGAGCCACCTGGACAGTCAAGCGTGCCAAGTGGACATTGACACCAGCCCAACACAACAGAAGCACACATGTGTGCGGAAGAGCCTGATTTGTGCCTTCGCCTTTGCATTTATCATCAGCGTAATGCTTATTGCAGCTAACCAGATGCTTCGTAGAGGTATGAAGTAGAAAGCCCTGTCtaccagaaagaaagaaagctcCACTACCAGAAGGGTTGTTTCCTTTGTTATCCTTTCACACTCAACCCAGTGACTAAGCATAGACAAATTGAACTGATAGATAGGAACCAAAATAACATGTAATTTTTTTCAGATACATATATTTAATGACTATTCTGTCCTGAGATCCATTTAGAGCCAAAACACAGACTGAACACCCTGATACCAAAACTGTCAACTGGACTAATGGATATAGGCCAGGAACCTGAGGGACAAAATGTCTTGTTCACCCTTCACCATTAGTTTCAGATGTTCTGAAGGTTACCACCAAACACACACTGTATCATACACaaaaagaaagaacaaatactAAGAAATTATACAATCTCTTTGATACAACTCACCATAATGTTGCCCTATACCATTCACAAGGTAATTTATTAGCCTTCTATTTCCTATGAGATAAATGAGTAAAGCTGTAGTGTCTGTGCTCTATTGCTAACCATGTTGTCTGAAACATATCGGCATTACTAGTGTATATCATGTGGCATTACAGCCTGCCCTTACAAAGCACGTAGCCAACGGAGTTTGTTTCCCTGCATACATTTGTATTCAACAGCACATAAAGAACATGCACAGTACATACACAACATAACTCTGCAGTACCAACGGCAGTTTCTAAAGAAAGTATCCTACCTGTTGTAGAGAAGGAATTTAGAGTTGTGGAGATATCATTTGGGGAATTTAGAGATGTGGAGATATCATTTGGGGAATTTAGAGATATCCTTTGGGGAATTTCGTAGACACAGATAATAATAGTTATCATCAGCAAACCTGAGATGCATCTGCCAATCTCTATCTCTTGAGTCACTGTTCCGATTGCTGGCTCACCCCAATTCTCCTTCTAAACACACAGCACATGTACATGTAAATAATACCACGTAGTATGATTTGTGTACTTCCTCTGTGGTGTTTACCTTCAAAGTCAGATGTACTTATTGAAATGATTATGCAAATGATAGTTATTATTGCAAAAAAGTACACCGTAGATTAACGTTTTGTGTAAATATTTCTATTCTGTGAATGTGGAGACAGTTTCAAAggacatttaaacatgttttttGTTTGGCTTTTGACATGGTCCACCAAAAACAACATGAAGCTATTGTTTAGATTTTTACATGGTTCTATTTTCTTAATGGAAGAAGAGATACTTTATATCAAAGATCAAGATATCAAGAATGCAAACatctacttttttttatttattagggTTCTTATGTATGATTCCCAGGTTTACTGAAACATCATTCTAATACATTTAGTAACCTGCTAATTTCCATGTACTTAAATTTGACATTTTGATCTTTTGTCATATTTCTTTTTTAGAAATCTATGTTTTCTCCTTATCATATATGAAGAATTGAACTCGTTTTAATGAAATGCTATATATATTCTCTTGCTCTTTTTATCACAAGCTGAATCAAGTCTGTATCATACCAGAAAATAGTATATCAAATAATGAAAAAGAACAGGGCTTGCAATAGTCTACCTTGATGAGGGTGACAAAAGGTTGCTCGGTTATCTGTTCATATATGAGAAATAACTATTTGACATTATATGCATTTGCGCAAATGTGAAATAGCCAGTGTAATAGACAATACATACAAAAATAGTAAAGCAATGATATTGTATATGACCGATGTTACATTGCATTAATGAGGAGAATATGTTAATGTACAGTTTGTTGAGAGTGATCTGATGTTTTTTCATATCCCTCAATGTGTTGTCATATGAAGCAGTTGTGTTCTCTATATGTGACTGTGATTTTCATCAAGTCAAACATAGTGCAGCTCTGATACTTTGTGCCAAACGCGGGGGGAAATGCACATATCAATAATTTCAGAATAACATGTTTTAGGGATTGAATATTCTTGATAGAAACATAACTTGCAAACAAATGTATTTCTTATCAGAAACAAATGTCTTGCAAATAAAAACTAAcgcaatatactgtatactgtatggaCATGGTGTATAGAAATGACCTCTCATGTGAACCTTCAAGTGTCCTCGCACTGTCTGTTGTTGCCTTTGGTTGAACTTTCTAAGGCATTCTTTCAGCATCAGTAATCTCATCCTATGCACTGTAATTGCACATATGTACCTGTCACCACATCAAATATACATTTATAAACATGATGTCTGGATGCATGTTGTCCAATAAACAAACACAAACGTAA

Function

NR:

description
calcium-binding protein 7-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602716.2 True 3907 mRNA 0.38 5 37520545 37549069

Neighbor

gene id symbol gene type direction distance location
m17 m17 coding upstream 108980 37409195 ~ 37411565 (+)
LOC110523739 LOC104958930 coding upstream 130519 37384835 ~ 37390026 (+)
LOC110523745 hspb1 coding upstream 144202 37374494 ~ 37376343 (+)
LOC110523733 LOC106564357 coding upstream 162021 37334100 ~ 37358524 (+)
myo1hb kctd10 coding upstream 234221 37270393 ~ 37287020 (+)
LOC110523751 NA coding downstream 19945 37569014 ~ 37572805 (+)
LOC110523753 LOC106564257 coding downstream 42104 37591173 ~ 37604425 (+)
trnaa-ugc-12 NA coding downstream 57108 37606177 ~ 37606250 (+)
LOC110523754 LOC106564246 coding downstream 107521 37656590 ~ 37690760 (+)
srsf9 sfrs9 coding downstream 368712 37917781 ~ 37921282 (+)
G396666 NA non-coding upstream 64354 37455898 ~ 37456191 (+)
G396602 NA non-coding upstream 101199 37418944 ~ 37419346 (+)
G396591 NA non-coding upstream 141158 37379153 ~ 37379387 (+)
G396590 NA non-coding upstream 142246 37376808 ~ 37378299 (+)
G396731 NA non-coding downstream 5543 37554612 ~ 37554811 (+)
G396735 NA non-coding downstream 7182 37556251 ~ 37556557 (+)
G396744 NA non-coding downstream 38160 37587229 ~ 37587480 (+)
G396820 NA non-coding downstream 166565 37715634 ~ 37782939 (+)
G396022 kdm2b other upstream 554893 36965084 ~ 36965652 (+)
G395034 NA other upstream 1219255 36280300 ~ 36301290 (+)
G395005 LOC106564805 other upstream 1313929 36202901 ~ 36206616 (+)
you2 you2 other upstream 1485778 36033260 ~ 36034806 (+)
LOC110523777 LOC106563114 other downstream 1765265 39297942 ~ 39317727 (+)
G399169 gpat3 other downstream 2213047 39762116 ~ 39765843 (+)
G399919 NA other downstream 2892686 40441755 ~ 40442086 (+)
G400154 NA other downstream 3315860 40864929 ~ 40881126 (+)

Expression


Co-expression Network