LOC110523753 (LOC106564257)


Basic Information

Item Value
gene id LOC110523753
gene name LOC106564257
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 37591173 ~ 37604425 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602726.2
CCAACTGTCAGTCGAACCACGAACTAGAACTGCTATAGCTACGCGCCCTCTAACGCAATATTTTTTATGACTTTAAATACAGCTAACTAATGTCGTACACTAAAGTAATACCAGGTCTAGTCAGGGCAAATTCTGACAACATCAAGAGAATATGCTTGTCTCAGGGGAGATTTCGGTCCACGGTCGCATCTAAGCAACATAAGGAGGTTGAAGGAGGGAAAGAAGAGCAGCAACTTGTTGAGTGCACCGTGGTGAAAGCTGTTCAAGCAGACCTCATCAGCCAAACAAAAAATAACACCGATGCTCAAACACGGAAGATCGCAATCGACTTTGATAATACACACGAAGCgtataaaagtaaagataacatTGAGCTGCTTAGAAGTCTGTTGGTCTTCAAGCTTTGCACATTCGACTTCCTCGTTGACAAGAACAAGGAGTTGATGGACCTCAGCAAGAAAGTGTTTGGCAAGCGGCTGTTTGAGAGGCTGATGAAGATGACGTTCTACGGGCAGTTTGTAGCTGGGGAGGACCATAACTCCATCAAGCCTCTGATCCATAAGAACCAGGCTTTTGGCGTGGGGTCAGTCCTGGATTACAGTGTGGAGGAGGACCTGACgcaagaggaggcagagaagaaGGAGATGGACTCCTGTGTGTCTGAAGCTGAGAAAGAAAGTCCAGTGCCAGCTGGAGAACACTTTGTAATGCAGGAACATGACTACAGCGTTGACCACCGTGAGAAGAAGTACAAGGCCCACCGTCAGTTTGGGGACCGTCGTGGGGGCGTGGTCAGTGCCAGGACCTACTTCTATGCTGACGAGGCCAAGTGTGATGCCCAGATGGAGACCTTCCTGAACTGCATCAAAGCATCAGGGGGGGCCTCTGTAGATGGATTTTCTGCCGTTAAGATGACTGCCCTGGGCCGCCCACAGTTTCTGCTCCAGTTCTCAGAGGTGCTGGTGAAATGGAGGAGGTTCTTCAACCTCCTAGCAGCACAGCAGGGGAAGTCTGGCATGGATGCACTGGAGCAGAAACTGGAACTGGAACAGCTGAAGGAGAGTTTGACTAAGCTGGGTGTTGGAAATAAAGACGACATTGAGAACTGGTTTACTGGAGAGAAACTGGGCTCATCAGGAACAATAGACCTCCTGGACTGGAATAGCTTGATCAACGACAGAACAAAGATCTCAAACTTGCTCGTCATTCCCAACGTTGAGAATGGTCAGCTGGAGCCTCTGTTGAGGAAGTTCACTGTTGAAGAGGAGAAACAGATGAAGAGGATGCTGCAGAGAGTGGATGTTCTGGCAAAGCATGCAGTGGACAATGGGGTGAGGCTGATGGTGGACGCTGAGCAGACATACTTTCAGCCGGCCATCAGCAGACTGACCCTGGAGATGCAGAGGATCTTCAACAGAGAGAAGCCCATCATCTTTAATACCTACCAGTGCTACCTCAAGGAAGCGTATGACAATGTGTCTGTGGACGTGGAGCTGTCCCGGCGTGAGGGCTGGTACTTTGGGGCCAAGCTGGTTCGCGGCGCCTACATGTACCAGGAGAGGAGCAGAGCGGAGGAAATCGGTTATGAGGACCCCATCAACCCAGATTACGAGGCCACCAATAGAATGTACCACAAGTGTTTAGAGTTTGTGTTGGAGGAGATCGACCACAACAGAAAGGCTAATGTCATGGTGGCGTCACACAACGAGGACACTGTCAAATTCACCCTGGGAAAGATGAACGAGATGGGTCTGTCCCCCACTGAGAAAAAGGTCTATTTTGGACAGCTGCTCGGCATGTGTGACCAGATAAGCTTCCCTCTAGGCCAGGCTGGATTCCCAGTGTACAAGTACGTCCCCTACGGCCCAGTCAACGAGGTCATCCCCTACCTGTCTCGCCGTGCCCTGGAGAACAGGGGCTTCATGAAGGGATCCCAGAGGGAGCGCAGCCTGTTGTGGAAGGAGCTCAAACGTAGGCTGCTCAACGGACAGATCCTCTACAAGCCTGTGTactgactgagctgactgactgGCACACCAGCACTCTGCCCCTTTAAAACATTCCAGTGTCTTAACTGAACCTGCCCTGGTCACAATGGAGGAACCCAAACTGCCACTTAATTGGAATTTTCACATAGTCATGCactgatgtcaatgggagactaaAGTGAAAATTTGACTTCCAGTAAGTGGAAGTTAGGGTTTACCCCTCTGGCTTTagaatgtactgtaggtaggtgtGTCTAGTACTGAGATATTATCCTAATGCCAAGTGTCCCTCTACCTTCCTTTTGCTCTATTTATTGCTGTTGAAAGTGTCCTTATTATATACCATGATCCTTATCCACTGCTTTTGTCATGGTTTAGTggcttacagtggcttgcgaaagtattcaaccccttggcatttttcctattttgttgccttataacctggaattaaaatacattttttgggggtggg
>XM_021602727.2
CCAACTGTCAGTCGAACCACGAACTAGAACTGCTATAGCTACGCGCCCTCTAACGCAATATTTTTTATGACTTTAAATACAGCTAACTAATGTCGTACACTAAAGTAATACCAGGTCTAGTCAGGGCAAATTCTGACAACATCAAGAGAATATGCTTGTCTCAGGGGAGATTTCGGTCCACGGTCGCATCTAAGCAACATAAGGAGGTTGAAGGAGGGAAAGAAGAGCAGCAACTTGTTGAGTGCACCGTGGTGAAAGCTGTTCAAGCAGACCTCATCAGCCAAACAAAAAATAACACCGATGCTCAAACACGGAAGATCGCAATCGACTTTGATAATACACACGAAGCgtataaaagtaaagataacatTGAGCTGCTTAGAAGTCTGTTGGTCTTCAAGCTTTGCACATTCGACTTCCTCGTTGACAAGAACAAGGAGTTGATGGACCTCAGCAAGAAAGTGTTTGGCAAGCGGCTGTTTGAGAGGCTGATGAAGATGACGTTCTACGGGCAGTTTGTAGCTGGGGAGGACCATAACTCCATCAAGCCTCTGATCCATAAGAACCAGGCTTTTGGCGTGGGGTCAGTCCTGGATTACAGTGTGGAGGAGGACCTGACgcaagaggaggcagagaagaaGGAGATGGACTCCTGTGTGTCTGAAGCTGAGAAAGAAAGTCCAGGCGTTGACCACCGTGAGAAGAAGTACAAGGCCCACCGTCAGTTTGGGGACCGTCGTGGGGGCGTGGTCAGTGCCAGGACCTACTTCTATGCTGACGAGGCCAAGTGTGATGCCCAGATGGAGACCTTCCTGAACTGCATCAAAGCATCAGGGGGGGCCTCTGTAGATGGATTTTCTGCCGTTAAGATGACTGCCCTGGGCCGCCCACAGTTTCTGCTCCAGTTCTCAGAGGTGCTGGTGAAATGGAGGAGGTTCTTCAACCTCCTAGCAGCACAGCAGGGGAAGTCTGGCATGGATGCACTGGAGCAGAAACTGGAACTGGAACAGCTGAAGGAGAGTTTGACTAAGCTGGGTGTTGGAAATAAAGACGACATTGAGAACTGGTTTACTGGAGAGAAACTGGGCTCATCAGGAACAATAGACCTCCTGGACTGGAATAGCTTGATCAACGACAGAACAAAGATCTCAAACTTGCTCGTCATTCCCAACGTTGAGAATGGTCAGCTGGAGCCTCTGTTGAGGAAGTTCACTGTTGAAGAGGAGAAACAGATGAAGAGGATGCTGCAGAGAGTGGATGTTCTGGCAAAGCATGCAGTGGACAATGGGGTGAGGCTGATGGTGGACGCTGAGCAGACATACTTTCAGCCGGCCATCAGCAGACTGACCCTGGAGATGCAGAGGATCTTCAACAGAGAGAAGCCCATCATCTTTAATACCTACCAGTGCTACCTCAAGGAAGCGTATGACAATGTGTCTGTGGACGTGGAGCTGTCCCGGCGTGAGGGCTGGTACTTTGGGGCCAAGCTGGTTCGCGGCGCCTACATGTACCAGGAGAGGAGCAGAGCGGAGGAAATCGGTTATGAGGACCCCATCAACCCAGATTACGAGGCCACCAATAGAATGTACCACAAGTGTTTAGAGTTTGTGTTGGAGGAGATCGACCACAACAGAAAGGCTAATGTCATGGTGGCGTCACACAACGAGGACACTGTCAAATTCACCCTGGGAAAGATGAACGAGATGGGTCTGTCCCCCACTGAGAAAAAGGTCTATTTTGGACAGCTGCTCGGCATGTGTGACCAGATAAGCTTCCCTCTAGGCCAGGCTGGATTCCCAGTGTACAAGTACGTCCCCTACGGCCCAGTCAACGAGGTCATCCCCTACCTGTCTCGCCGTGCCCTGGAGAACAGGGGCTTCATGAAGGGATCCCAGAGGGAGCGCAGCCTGTTGTGGAAGGAGCTCAAACGTAGGCTGCTCAACGGACAGATCCTCTACAAGCCTGTGTactgactgagctgactgactgGCACACCAGCACTCTGCCCCTTTAAAACATTCCAGTGTCTTAACTGAACCTGCCCTGGTCACAATGGAGGAACCCAAACTGCCACTTAATTGGAATTTTCACATAGTCATGCactgatgtcaatgggagactaaAGTGAAAATTTGACTTCCAGTAAGTGGAAGTTAGGGTTTACCCCTCTGGCTTTagaatgtactgtaggtaggtgtGTCTAGTACTGAGATATTATCCTAATGCCAAGTGTCCCTCTACCTTCCTTTTGCTCTATTTATTGCTGTTGAAAGTGTCCTTATTATATACCATGATCCTTATCCACTGCTTTTGTCATGGTTTAGTggcttacagtggcttgcgaaagtattcaaccccttggcatttttcctattttgttgccttataacctggaattaaaatacattttttgggggtggg

Function

NR:

description
proline dehydrogenase 1, mitochondrial-like isoform X2

GO: NA

KEGG:

id description
K00318 PRODH, fadM, putB; proline dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602726.2 False 2463 mRNA 0.49 15 37591173 37604425
XM_021602727.2 True 2421 mRNA 0.49 14 37591173 37604425

Neighbor

gene id symbol gene type direction distance location
LOC110523751 NA coding upstream 18368 37569014 ~ 37572805 (+)
LOC110523748 LOC106564295 coding upstream 42104 37520545 ~ 37549069 (+)
m17 m17 coding upstream 179608 37409195 ~ 37411565 (+)
LOC110523739 LOC104958930 coding upstream 201147 37384835 ~ 37390026 (+)
LOC110523745 hspb1 coding upstream 214830 37374494 ~ 37376343 (+)
trnaa-ugc-12 NA coding downstream 1752 37606177 ~ 37606250 (+)
LOC110523754 LOC106564246 coding downstream 52165 37656590 ~ 37690760 (+)
srsf9 sfrs9 coding downstream 313356 37917781 ~ 37921282 (+)
LOC110523757 NA coding downstream 339433 37943858 ~ 37964766 (+)
LOC110522927 LOC106565790 coding downstream 360433 37964858 ~ 37974637 (+)
G396744 NA non-coding upstream 3693 37587229 ~ 37587480 (+)
G396735 NA non-coding upstream 34616 37556251 ~ 37556557 (+)
G396731 NA non-coding upstream 36362 37554612 ~ 37554811 (+)
G396666 NA non-coding upstream 134982 37455898 ~ 37456191 (+)
G396820 NA non-coding downstream 111209 37715634 ~ 37782939 (+)
G396979 NA non-coding downstream 333541 37937966 ~ 37954156 (+)
G396991 NA non-coding downstream 361885 37966310 ~ 37966520 (+)
G396992 NA non-coding downstream 372086 37976511 ~ 37976790 (+)
G396022 kdm2b other upstream 625521 36965084 ~ 36965652 (+)
G395034 NA other upstream 1289883 36280300 ~ 36301290 (+)
G395005 LOC106564805 other upstream 1384557 36202901 ~ 36206616 (+)
you2 you2 other upstream 1556406 36033260 ~ 36034806 (+)
LOC110523777 LOC106563114 other downstream 1709909 39297942 ~ 39317727 (+)
G399169 gpat3 other downstream 2157691 39762116 ~ 39765843 (+)
G399919 NA other downstream 2837330 40441755 ~ 40442086 (+)
G400154 NA other downstream 3260504 40864929 ~ 40881126 (+)

Expression


Co-expression Network