glis3 (LOC106564006)


Basic Information

Item Value
gene id glis3
gene name LOC106564006
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 38973438 ~ 39005816 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602768.2
AGGGCAAAAGGGTAACCGATACACCTCCCTGCTGGAGATGATGACCAAAACGAATACGTAGCCTACCAACAAGAGGCTCAGTGACTGGGTGCAAAGAGCGCGTGGGACCAACTTCATCACAACTTCTCAACTTCTCAAACATAGATATGAATAATGTATCGAAACCGCGAACAGTAATTTCACCTTAACTGTGTGGTGATGTCGAAAATCTGCCTTGTTTAGATACTTAGCGATGTCATCATCACCTTGCCGTTTCGAATTTTGACCTGGCAATCTACCGATAAATGATCATACTTAGATACATTATCTGAAGTCATTATTGCCTTGCTGTTTCGAGTTTTCACCTGTCAATCTACTACTTGACAGATGATAGTTTCAGTGCTAAAGAATTTTCAGATGTCTTTGTCCGTATGGATAGACCACTGAGAGCCTGAAGATGAGATGCTGATTTAGCCACGGATCTTCTGCTGACTCAAGCATGACTTTTGGGAAGAGGAGCATTGTGGGAAAAGTTGTTCTTGTCTCCTAAACCCTTCAAGGCTGTTTGTGAAAAAGAAACCGGGTCAGACATGAACGGTAAGGGCTGTCACCTCTTGGTCTCTCCCTCTGGTGTACCCCCATCTCTGGGCATGATCACAGGACAGCAGGCCCCCTCCATCAGGATGCCTATGCGCACCACCCTGTCCCCAGGATTCTGTGCCACCCTGAGCCCCTCACCAGTGGGTAGCAgctggggtagaggagggggtgtCCACCACTCCCAGGTACCCCTCAGCTCCGGGACAAACTCTGGGAATTCTGGGAGTTCTGTCCTGCTCCCTGCCCTGAGTCTCCGCAGGCAGATGTTGACCAATGGGAAACAGCCAAATGTGTCAAGTGTCTCACAGATGTCAAGGCAACAAGTGCCCGCCCTTCAACTCCCACCCATCAGCATTGCAGCCACCAATCAGGGCATGGTGTCTGACTGCTCTGACAGTGGTGTCAAAGGTTACTCTGTCTCAGGACCAAGTATGCAGGTGTTGGGCCAGCCAGCTGGTGCTAACCTCTGGGTCACCAGTAGTCCGATGGTGGTCCAGAGCCTGGGCCCAGTGTCTCCTGTGAGTGCCCAGGCCTACACCTCAGCTCCTCTGGTACCACATGCCCCCCAAGACTCCCAACCCCCACAAGGCCTGATGGTACCCTACACAGATGCCAGGTCCTTGCTCTCCAGAGAGTCCCTGGCCTCCACCACCCTGAGCCTAGCAGAGACCCAGTCAGTTCTGAGTGGCAGACAGGAGTGGCCCTACGGCTACCGGGTCCTTCCTCCACTCTGCCCACAGCAGGGCTCAACCCTTGGCAGCGAGGGTGGTGAGCTGCTCAGCATGCCCCCTGGCACTGCCATGTCAGGGAGCACCAGCATCTCCAACTCTGCGTCCCTGCCTTCCTACCTGTTTGGCGGGGATGCCAACAGCCCCCGGCAGTACTCAGCCCGTTCCAAGAAGAGGGCCCTCTCCATGTCCCCTCTGTCAGATGGCTATGGCATCGACTTCAACTCCATCATCCGCACCTCACCCACCTCGCTGGTGGCTTACATCAATGGCTCCCGGAGCTCTCCGGCTTCCCACCACACCCTTTCACCCCTCCAGCCTGAGGTCTATGGCCACTTCCTAGGGGTGAGAGGGAGCTGTATCCCCTATCCTCAGTCTCCAGGCCTCTTCAGCCTCCCAGGCTCCACGCTGGCCCTGATCCCACTGAGTGACCCCCACCCTGGGACGGAGTGTGGCCGCATGCAGATGCTGGAGCAGGGAGGGGCGCTGGAGAGCCAGATGGCtaacatggtggtggtggagcaGCAGTGTCTcccagaggagggagggacactACAGGAGGCAGCCAGGAGTGCTAATGACCTGGTGCCATCTCTACACTTTCAGCTAGAGTTGGCCACCATCATCAGATCAGCTAGTCCACCACAGGGCCCTCCGCCTCCCTACCACTCTCACCagcacctccacctccacagacCTCCCAGCCACATCCAGGGCCCTGTCCCACAGGCTCCGCCAGCTCCCCCTGTGCATGGGGCCAGCCTCCTGCCCCATCCCCTGTCCCTGTTCCCCatgctggaggaagaggagggggagacagaggactACAGTGGGGGCCACTGCTGCCGCTGGGTTGACTGCAGTGCTGTGTATGACCAAAAGGAGGAGCTGGTAAGGCACATAGAGAAGCTCCATGTGGACCAGCGGAAAGGCGAGGACTTCACCTGCTTCTGGGCAGGGTGTCCACGCAGGTTCAAGCCCTTCAACGCCCGCTACAAACTCCTCATCCACATGAGAGTCCACTCAGGAGAGAAGCCCAACAAGTGCACGTTTGAGGGCTGTCAGAAGGCTTTCTCTCGGCTGGAGAACCTGAAGATCCACCTGCGCagccacactggagagaagccttatcaaTGCCAGCACCCCGGCTGCCACAAAGCCTTCAGCAACTCCAGCGACCGAGCCAAGCATCAGCGCACCCACCTGGACACGAAGCCGTACGCGTGTCAGATCCCTGGTTGTGTAAAGCGCTACACTGACCCCAGCTCCCTGCGCAAGCACGTCAAATCCCATTCATCCAAAGAGAGGCAGTTGAGGAAGAAGCTGAGGTTGTCCGTTGACATGAGCCAAGAGGCATTAACGGATTGCCTAACCATCCAACCCCTGAAACCCAGCCTCTCTCCTCTGGACATGATTGACAGAAGGTTGGGCCAATCCCCTAGCCCCTCCATAGATCACTACACAGATTTGCTGTCCAGTGGCCAGTCAAGCCACTGTGTATCTCTATCCATCCCTGTCCCTCCAGCTGTTCCACAGGACCAACGCTCCTCAAACAGCTCACACCTGGCTCTGCAGGACAGTTACAGGTTTGCCAATAGGTCCCCCCACCACCTCAGCCCCGGGTCACACCAAAACCAACTGCCCGGTCCCTCCACTCCTCTTACCCACCACCATCCCACTGGCTTATCTCTAAAGACCAGCACAGCTCTGAGTCATCCCAGTCACACTCCTGTCGTAAAAACAGACCACCACCCAGGTTTTAGTGGTCAGATCCAAATGGTGTACTCTCCGTCATACAACAATGATACACACAGATCCACCAAGCAGACCAACTCCTGTCACCTGATGCAAACCCCAGtgtttgatgacagctttgctccaACATTTACCACTCAGAATGGACTAGACATCTCCCAAAGAGCTCTGTCGTCTGGGCTCACAGTATACGATCTGCAAGGTGCGTCACAGGATCTGCCGGCGCCAGTGATGTCAGAGGACGCTTATCTACATGTCAGCGGGGTGGACCGTTGCTCTAGCCAGCTCTCCTGTATCTACACTGAGGGTTGACGTCAGCAAATCTATCCACTTCTTAAGGCAGATGCTTTCTTTAATACTCCTACAACAACCCTATTGTTCTTCAGCTCCATGCGCACTGACATTGACCTGAGTGTGATGCCCCTATTGGGTGAGAACTGTAGACAAGAGGAGACATACAGTAGTTTTAATTAATTAAATGGTCAAAATGAACATATACATATCACATATTAACTGATATTATTCAATCGACATTGTTTTCATAATGGCAAGTCATATGGTCATATGTATCATAAAAACTATTCTGAGATCCTTACTTTTGAAGTCTGCAAGATGCTGTCTTCATTCAACTGAGTATCATCCACAAGAGGCTGCTGAGGGgtgaacggctcataataatggccgggaagggagcaaatggaatggcatcaaacacctggaaaccatgtgtttgatgtatttgttgCCATCCCGCCAATTCCGATCCAGTCATTAACACAAGCCCGTTCtccacaattaaggtgccaccaacctcctgcggTAACATCGGAAGTCTAAGCCCACAATAAAATATGCCTCCTAAAGATTGTGTTGTACTGAAAAAAATGACACTTCTGTGGGTGCCTATGGTCTTGAGCTTTGGAGGATTTTTTATGTTTACATTAGTTGAATGCATTTGTACTACAGTTGTATCGAAATATTGTCCCTCCTATTATGCAATTACTGTAGATACCATAAAAAGCACACAAAAGGCatgttattttgtttttaaaaCGTGTTAGTAGCATaggaattatactgaacaaaaatataaatacaacatgtaaactgttggtcccatgtttcatgagctgaaataaaagatcagagaaa

Function

NR:

description
zinc finger protein GLIS3-like

GO: NA

KEGG:

id description
K09232 GLIS1_3; zinc finger protein GLIS1/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602768.2 True 4214 mRNA 0.52 11 38973438 39005816

Neighbor

gene id symbol gene type direction distance location
bmpr1bb LOC106564072 coding upstream 292269 38569703 ~ 38681169 (+)
pdlim5b LOC106564051 coding upstream 404284 38496984 ~ 38569154 (+)
opn4xa opn4x1b2 coding upstream 492754 38436446 ~ 38480684 (+)
LOC110523766 LOC106564097 coding upstream 585341 38361166 ~ 38388097 (+)
LOC110523763 wdr70 coding upstream 657148 38230285 ~ 38316290 (+)
rfx3 LOC106563985 coding downstream 2231 39008047 ~ 39067301 (+)
LOC110522932 LOC106563304 coding downstream 184649 39190465 ~ 39191487 (+)
LOC110523777 LOC106563114 coding downstream 292126 39297942 ~ 39317727 (+)
LOC110523778 NA coding downstream 317825 39323641 ~ 39327183 (+)
nadk2 LOC106563865 coding downstream 325341 39331157 ~ 39338343 (+)
G397946 NA non-coding upstream 8054 38965133 ~ 38965384 (+)
G397945 NA non-coding upstream 9983 38963249 ~ 38963455 (+)
G397944 NA non-coding upstream 11714 38961519 ~ 38961724 (+)
G397943 NA non-coding upstream 11978 38961165 ~ 38961460 (+)
G397940 NA non-coding upstream 17324 38955878 ~ 38956114 (+)
G397958 NA non-coding downstream 569 39006385 ~ 39007160 (+)
G397971 NA non-coding downstream 23627 39029443 ~ 39029671 (+)
G397973 NA non-coding downstream 25491 39031307 ~ 39031522 (+)
G397974 NA non-coding downstream 25897 39031713 ~ 39032028 (+)
srsf9 sfrs9 other upstream 1052202 37917781 ~ 37921282 (+)
m17 m17 other upstream 1562539 37409195 ~ 37411565 (+)
G396022 kdm2b other upstream 2007786 36965084 ~ 36965652 (+)
G395034 NA other upstream 2672148 36280300 ~ 36301290 (+)
G395005 LOC106564805 other upstream 2766822 36202901 ~ 36206616 (+)
G399169 gpat3 other downstream 756300 39762116 ~ 39765843 (+)
G399919 NA other downstream 1435939 40441755 ~ 40442086 (+)
G400154 NA other downstream 1859113 40864929 ~ 40881126 (+)
G400267 LOC106561151 other downstream 2099708 41105524 ~ 41106754 (+)

Expression


Co-expression Network