Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110522932 |
| gene name | LOC106563304 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 39190465 ~ 39191487 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| rhodopsin-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021601370.2 | True | 1023 | mRNA | 0.54 | 1 | 39190465 | 39191487 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| rfx3 | LOC106563985 | coding | upstream | 125956 | 39008047 ~ 39067301 (+) |
| glis3 | LOC106564006 | coding | upstream | 184649 | 38973438 ~ 39005816 (+) |
| bmpr1bb | LOC106564072 | coding | upstream | 509296 | 38569703 ~ 38681169 (+) |
| pdlim5b | LOC106564051 | coding | upstream | 621311 | 38496984 ~ 38569154 (+) |
| opn4xa | opn4x1b2 | coding | upstream | 709781 | 38436446 ~ 38480684 (+) |
| LOC110523777 | LOC106563114 | coding | downstream | 106455 | 39297942 ~ 39317727 (+) |
| LOC110523778 | NA | coding | downstream | 132154 | 39323641 ~ 39327183 (+) |
| nadk2 | LOC106563865 | coding | downstream | 139670 | 39331157 ~ 39338343 (+) |
| LOC110523779 | LOC106563815 | coding | downstream | 155622 | 39347109 ~ 39371739 (+) |
| LOC100653455 | LOC106563802 | coding | downstream | 187641 | 39379128 ~ 39390166 (+) |
| G398518 | LOC107373903 | non-coding | upstream | 39397 | 39150527 ~ 39151068 (+) |
| G398516 | NA | non-coding | upstream | 41126 | 39148526 ~ 39149339 (+) |
| G398511 | NA | non-coding | upstream | 49253 | 39140975 ~ 39141212 (+) |
| G398497 | NA | non-coding | upstream | 59078 | 39131119 ~ 39131387 (+) |
| G398485 | NA | non-coding | upstream | 66162 | 39124099 ~ 39124303 (+) |
| G398548 | LOC106563918 | non-coding | downstream | 7374 | 39198861 ~ 39201487 (+) |
| G398577 | NA | non-coding | downstream | 92099 | 39283586 ~ 39284402 (+) |
| G398635 | NA | non-coding | downstream | 125783 | 39317270 ~ 39339198 (+) |
| G398571 | NA | non-coding | downstream | 128205 | 39319692 ~ 39320238 (+) |
| G398717 | NA | non-coding | downstream | 314547 | 39506034 ~ 39506363 (+) |
| srsf9 | sfrs9 | other | upstream | 1269229 | 37917781 ~ 37921282 (+) |
| m17 | m17 | other | upstream | 1779566 | 37409195 ~ 37411565 (+) |
| G396022 | kdm2b | other | upstream | 2224813 | 36965084 ~ 36965652 (+) |
| G395034 | NA | other | upstream | 2889175 | 36280300 ~ 36301290 (+) |
| G395005 | LOC106564805 | other | upstream | 2983849 | 36202901 ~ 36206616 (+) |
| G399169 | gpat3 | other | downstream | 570629 | 39762116 ~ 39765843 (+) |
| G399919 | NA | other | downstream | 1250268 | 40441755 ~ 40442086 (+) |
| G400154 | NA | other | downstream | 1673442 | 40864929 ~ 40881126 (+) |
| G400267 | LOC106561151 | other | downstream | 1914037 | 41105524 ~ 41106754 (+) |
