LOC110523777 (LOC106563114)


Basic Information

Item Value
gene id LOC110523777
gene name LOC106563114
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 39297942 ~ 39317727 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977469.1
TATGTCGCTCACCACGCCCACATTTTCCAAGCAGACAGGAGCCACAATGTGGCGCACGCTCGGTAGTGAACACGGTATACGACTGTTCATTCATAAACACAGCGAATGCAAACTGACTGACAGTTGAATCGAGAGTAAGAAAATCAACAATTCCGGACAATCAAGCTTTTGACACCAAGAGAGCAAATCACCACTTTTATCTGGGCGTTTCTTCCTTTTCTTGAGGTTGTGTTTATTTCACTAGTTTGTCACAGCTTCAGATCCGAAGAATGAGAGGGAATCTTTCCCAGAACGAAGATATTTCAGCGTATTATTCAATGATGCCAGTCTCGGACTTCCATGAAAATGTTCCCTGTACGGTGGAGCCCGCGGAGAGTGTCTGTGGAGCGACAGAACCTGTCACCTCTAGACCGCGGATGGGGAATACCTCTCTGGCGCAGGATAGAGGATGCGCGCAGGACGTAGCTGAAGAGTTAAAGGAAAAAACTGTGCTTGCCCCACCAATGTTCATCTTTCAAAAGAAAACCCCATCCATGAAGAGAAGcgcagagagatgggaggagggctCAGTTATGGGAATCAGTCCAAACAAACGAGTCAGATCGCTCACCTACCCTAACAACAGAAACAGGAAAGGCTCCTGTGACGGCAGTAGACGAGTGCGATCaagttctctctcttttcccccgcGTCCTCCAGTCTCAAGATCAAATGTCTTCATGCCCTCAAATCTCTGCAGCCAGACCAACATTTCCCAAAACAAAGTGTCACCTCTGAACAGGGTCAGAAGGTCATTACTTCAGCCTGCACGTCTCCTCGCCCCTCAGCCCAGGAACAACATCTCACAGCCACACCTATCTGAGGTCAGCCATGACCTTTCAGACGATTGCTGCAGCGTCACAACTGACCACTCCTCCACTGTGAGTGTATTACATCCGAAGACGTTCCCTCAAGTTCACAGAGCTACGTGGTGTCAGAGACACAGTTTAGTTCCCAGCAATGATTCTGAACCTGCTGACCTCTCTGCTGACCTCTGGTTCACCCTCTACAGATTGAAGGCAGACACTATTACCTCAGACAGGGTCCAGTTTGTATTTGGGGAAAACATGGGCGCGAGAGTTTTGAGACCACAGAAATTGCCCAGCAGTGAACATTCTGATTGCAGCTCCTCCACCTTTGAGACAAGGCATAAAGGTGCTGTGTGGAGCAGCCTGAGGGAGTCTGCTGCAGCTTACACAGAGTCCTGTGGGAGGCAGCGTGTGCTCAGGCGGGTTCAGCTGTTCactggggaggagaaggagagcaaTGTGGTCCAGTACATCTTTCACACCTGCCTCCCTCCGATCAAAACAGTGATGAGGCACCAGGGCAGTCTGAAAGTCATCCTCAACACTAAGCTCTGGCCCCACACACACCTGCGTCGCCCCGCACGTCGGAACCTCCAGGTGACGGCCACCGACGTGGAGACCCAGGCCATCCGGGTGTTCCTCATCCAGGCCAGCGCCAGGGACGTGGCTCGCCTCTACGTAGCCATCCACCATCGGCTGGTAGCCCTACGGGCCAGTGCTGCTGGGCTGGAGGCAGGGGCTGCAGGGGGCAGGACCAGGGAGGGACACTGCAACAGTgagaatgaggaagaggaggagcaggatgaGCAGAGACAACGGCAAGAACGAGAAGGGCTGCTAGTGACACGATTGCGACCTGTGGTTTGTGATTGGATACACAGTAAACCCAGTTTGGAATCTTGGTGACATGACATTATACTGACCTGGACCATGCAACAGTTTGTGGTGTCATCACATCTGAACAGAACTTTTAACCATCATGGAACAAAACATCAAGAGACCACTTTCAAAAATACATACTAGCATTTACTGAGCTACCATGACTACCCTTTGCCAAAAGAAcatacattaccaaaagtatgtggacacctgcttgtcgaacagctgattccaaaatcatgggcattgatatggagttggttccccccccccccccccc
>XM_021602788.2
CGCTCACCACGCCCACATTTTCCAAGCAGACAGGAGCCACAATGTGGCGCACGCTCGGTAGTGAACACGGTATACGACTGTTCATTCATAAACACAGCGAATGCAAACTGACTGACAGTTGAATCGAGAGTAAGAAAATCAACAATTCCGGACAATCAAGCTTTTGACACCAAGAGAGCAAATCACCACTTTTATCTGGGCGTTTCTTCCTTTTCTTGAGGTTGTGTTTATTTCACTAGTTTGTCACAGCTTCAGATCCGAAGAATGAGAGGGAATCTTTCCCAGAACGAAGATATTTCAGCGTATTATTCAATGATGCCAGTCTCGGACTTCCATGAAAATGTTCCCTGTACGGTGGAGCCCGCGGAGAGTGTCTGTGGAGCGACAGAACCTGTCACCTCTAGACCGCGGATGGGGAATACCTCTCTGGCGCAGGATAGAGGATGCGCGCAGGACGTAGCTGAAGAGTTAAAGGAAAAAACTGTGCTTGCCCCACCAATGTTCATCTTTCAAAAGAAAACCCCATCCATGAAGAGAAGcgcagagagatgggaggagggctCAGTTATGGGAATCAGTCCAAACAAACGAGTCAGATCGCTCACCTACCCTAACAACAGAAACAGGAAAGGCTCCTGTGACGGCAGTAGACGAGTGCGATCaagttctctctcttttcccccgcGTCCTCCAGTCTCAAGATCAAATGTCTTCATGCCCTCAAATCTCTGCAGCCAGACCAACATTTCCCAAAACAAAGTGTCACCTCTGAACAGGGTCAGAAGGTCATTACTTCAGCCTGCACGTCTCCTCGCCCCTCAGCCCAGGAACAACATCTCACAGCCACACCTATCTGAGGTCAGCCATGACCTTTCAGACGATTGCTGCAGCGTCACAACTGACCACTCCTCCACTGTGAGTGTATTACATCCGAAGACGTTCCCTCAAGTTCACAGAGCTACGTGGTGTCAGAGACACAGTTTAGTTCCCAGCAATGATTCTGAACCTGCTGACCTCTCTGCTGACCTCTGGTTCACCCTCTACAGATTGAAGGCAGACACTATTACCTCAGACAGGGTCCAGTTTGTATTTGGGGAAAACATGGGCGCGAGAGTTTTGAGACCACAGAAATTGCCCAGCAGTGAACATTCTGATTGCAGCTCCTCCACCTTTGAGACAAGGCATAAAGGTGCTGTGTGGAGCAGCCTGAGGGAGTCTGCTGCAGCTTACACAGAGTCCTGTGGGAGGCAGCGTGTGCTCAGGCGGGTTCAGCTGTTCactggggaggagaaggagagcaaTGTGGTCCAGCTAACCTGCAGACTGTTTGTTCTGGAAAATGGAACTCAGGCATGGaatgagcgagggagaggagTCCTGCGACTCAATGATCTAATGGCAGGGACCAAAGGAGGGCTGCAGTCCAGGATAGTGATGAGGCACCAGGGCAGTCTGAAAGTCATCCTCAACACTAAGCTCTGGCCCCACACACACCTGCGTCGCCCCGCACGTCGGAACCTCCAGGTGACGGCCACCGACGTGGAGACCCAGGCCATCCGGGTGTTCCTCATCCAGGCCAGCGCCAGGGACGTGGCTCGCCTCTACGTAGCCATCCACCATCGGCTGGTAGCCCTACGGGCCAGTGCTGCTGGGCTGGAGGCAGGGGCTGCAGGGGGCAGGACCAGGGAGGGACACTGCAACAGTgagaatgaggaagaggaggagcaggatgaGCAGAGACAACGGCAAGAACGAGAAGGGCTGCTAGTGACACGATTGCGACCTGTGGTTTGTGATTGGATACACAGTAAACCCAGTTTGGAATCTTGGTGACATGACATTATACTGACCTGGACCATGCAACAGTTTGTGGTGTCATCACATCTGAACAGAACTTTTAACCATCATGGAACAAAACATCAAGAGACCACTTTCAAAAATACATACTAGCATTTACTGAGCTACCATGACTACCCTTTGCCAAAAGAAcatacattaccaaaagtatgtggacacctgcttgtcgaacagctgattccaaaatcatgggcattgatatggagttggttccccccccccccccccc
>XM_021602789.2
CACCACGCCCACATTTTCCAAGCAGACAGGAGCCACAATGTGGCGCACGCTCGGTAGTGAACACGGTATACGACTGTTCATTCATAAACACAGCGAATGCAAACTGACTGACAGTTGAATCGAGAGTAAGAAAATCAACAATTCCGGACAATCAAGCTTTTGACACCAAGAGAGCAAATCACCACTTTTATCTGGGCGTTTCTTCCTTTTCTTGAGGTTGTGTTTATTTCACTAGTTTGTCACAGCTTCAGATCCGAAGAATGAGAGGGAATCTTTCCCAGAACGAAGATATTTCAGCGTATTATTCAATGATGCCAGTCTCGGACTTCCATGAAAATGTTCCCTGTACGGTGGAGCCCGCGGAGAGTGTCTGTGGAGCGACAGAACCTGTCACCTCTAGACCGCGGATGGGGAATACCTCTCTGGCGCAGGATAGAGGATGCGCGCAGGACGTAGCTGAAGAGTTAAAGGAAAAAACTGTGCTTGCCCCACCAATGTTCATCTTTCAAAAGAAAACCCCATCCATGAAGAGAAGcgcagagagatgggaggagggctCAGTTATGGGAATCAGTCCAAACAAACGAGTCAGATCGCTCACCTACCCTAACAACAGAAACAGGAAAGGCTCCTGTGACGGCAGTAGACGAGTGCGATCaagttctctctcttttcccccgcGTCCTCCAGTCTCAAGATCAAATGTCTTCATGCCCTCAAATCTCTGCAGCCAGACCAACATTTCCCAAAACAAAGTGTCACCTCTGAACAGGGTCAGAAGGTCATTACTTCAGCCTGCACGTCTCCTCGCCCCTCAGCCCAGGAACAACATCTCACAGCCACACCTATCTGAGGTCAGCCATGACCTTTCAGACGATTGCTGCAGCGTCACAACTGACCACTCCTCCACTGTGAGTGTATTACATCCGAAGACGTTCCCTCAAGTTCACAGATTGAAGGCAGACACTATTACCTCAGACAGGGTCCAGTTTGTATTTGGGGAAAACATGGGCGCGAGAGTTTTGAGACCACAGAAATTGCCCAGCAGTGAACATTCTGATTGCAGCTCCTCCACCTTTGAGACAAGGCATAAAGGTGCTGTGTGGAGCAGCCTGAGGGAGTCTGCTGCAGCTTACACAGAGTCCTGTGGGAGGCAGCGTGTGCTCAGGCGGGTTCAGCTGTTCactggggaggagaaggagagcaaTGTGGTCCAGCTAACCTGCAGACTGTTTGTTCTGGAAAATGGAACTCAGGCATGGaatgagcgagggagaggagTCCTGCGACTCAATGATCTAATGGCAGGGACCAAAGGAGGGCTGCAGTCCAGGATAGTGATGAGGCACCAGGGCAGTCTGAAAGTCATCCTCAACACTAAGCTCTGGCCCCACACACACCTGCGTCGCCCCGCACGTCGGAACCTCCAGGTGACGGCCACCGACGTGGAGACCCAGGCCATCCGGGTGTTCCTCATCCAGGCCAGCGCCAGGGACGTGGCTCGCCTCTACGTAGCCATCCACCATCGGCTGGTAGCCCTACGGGCCAGTGCTGCTGGGCTGGAGGCAGGGGCTGCAGGGGGCAGGACCAGGGAGGGACACTGCAACAGTgagaatgaggaagaggaggagcaggatgaGCAGAGACAACGGCAAGAACGAGAAGGGCTGCTAGTGACACGATTGCGACCTGTGGTTTGTGATTGGATACACAGTAAACCCAGTTTGGAATCTTGGTGACATGACATTATACTGACCTGGACCATGCAACAGTTTGTGGTGTCATCACATCTGAACAGAACTTTTAACCATCATGGAACAAAACATCAAGAGACCACTTTCAAAAATACATACTAGCATTTACTGAGCTACCATGACTACCCTTTGCCAAAAGAAcatacattaccaaaagtatgtggacacctgcttgtcgaacagctgattccaaaatcatgggcattgatatggagttggttccccccccccccccccc
>XM_036977470.1
CTGTCCCCAGCTCCCAGAGCCCCTTGTCAGGCTGTGTGGTTACATAAGAGGCCTTGGATGTCAAAGCCTCCATTCATTAGGATAATACATTGAGGTGGGATGACAATTGACATCTCCAGAACTGTGGGCGAGCCTAGCGATCTCGCTGCTCTTTGGGCCGTTGTGCAGATTTTTCCTGCAATTGTGACATTTCAACTTCTTGGCTGTCATCCTTTGCATTAAAAAACTGTGCTTGCCCCACCAATGTTCATCTTTCAAAAGAAAACCCCATCCATGAAGAGAAGcgcagagagatgggaggagggctCAGTTATGGGAATCAGTCCAAACAAACGAGTCAGATCGCTCACCTACCCTAACAACAGAAACAGGAAAGGCTCCTGTGACGGCAGTAGACGAGTGCGATCaagttctctctcttttcccccgcGTCCTCCAGTCTCAAGATCAAATGTCTTCATGCCCTCAAATCTCTGCAGCCAGACCAACATTTCCCAAAACAAAGTGTCACCTCTGAACAGGGTCAGAAGGTCATTACTTCAGCCTGCACGTCTCCTCGCCCCTCAGCCCAGGAACAACATCTCACAGCCACACCTATCTGAGGTCAGCCATGACCTTTCAGACGATTGCTGCAGCGTCACAACTGACCACTCCTCCACTGTGAGTGTATTACATCCGAAGACGTTCCCTCAAGTTCACAGAGCTACGTGGTGTCAGAGACACAGTTTAGTTCCCAGCAATGATTCTGAACCTGCTGACCTCTCTGCTGACCTCTGGTTCACCCTCTACAGATTGAAGGCAGACACTATTACCTCAGACAGGGTCCAGTTTGTATTTGGGGAAAACATGGGCGCGAGAGTTTTGAGACCACAGAAATTGCCCAGCAGTGAACATTCTGATTGCAGCTCCTCCACCTTTGAGACAAGGCATAAAGGTGCTGTGTGGAGCAGCCTGAGGGAGTCTGCTGCAGCTTACACAGAGTCCTGTGGGAGGCAGCGTGTGCTCAGGCGGGTTCAGCTGTTCactggggaggagaaggagagcaaTGTGGTCCAGCTAACCTGCAGACTGTTTGTTCTGGAAAATGGAACTCAGGCATGGaatgagcgagggagaggagTCCTGCGACTCAATGATCTAATGGCAGGGACCAAAGGAGGGCTGCAGTCCAGGATAGTGATGAGGCACCAGGGCAGTCTGAAAGTCATCCTCAACACTAAGCTCTGGCCCCACACACACCTGCGTCGCCCCGCACGTCGGAACCTCCAGGTGACGGCCACCGACGTGGAGACCCAGGCCATCCGGGTGTTCCTCATCCAGGCCAGCGCCAGGGACGTGGCTCGCCTCTACGTAGCCATCCACCATCGGCTGGTAGCCCTACGGGCCAGTGCTGCTGGGCTGGAGGCAGGGGCTGCAGGGGGCAGGACCAGGGAGGGACACTGCAACAGTgagaatgaggaagaggaggagcaggatgaGCAGAGACAACGGCAAGAACGAGAAGGGCTGCTAGTGACACGATTGCGACCTGTGGTTTGTGATTGGATACACAGTAAACCCAGTTTGGAATCTTGGTGACATGACATTATACTGACCTGGACCATGCAACAGTTTGTGGTGTCATCACATCTGAACAGAACTTTTAACCATCATGGAACAAAACATCAAGAGACCACTTTCAAAAATACATACTAGCATTTACTGAGCTACCATGACTACCCTTTGCCAAAAGAAcatacattaccaaaagtatgtggacacctgcttgtcgaacagctgattccaaaatcatgggcattgatatggagttggttccccccccccccccccc
>TU452179
TGCTGCAGCTTACACAGAGTCCTGTGGGAGGCAGCGTGTGCTCAGGCGGGTTCAGCTGTTCactggggaggagaaggagagcaaTGTGGTCCAGCTAACCTGCAGACTGTTTGTTCTGGAAAATGGAACTCAGGCATGGaatgagcgagggagaggagTCCTGCGACTCAATGATCTAATGGCAGGGACCAAAGGAGGGCTGCAGTCCAGGATAGTGATGAGGCACCAGGGCAGTCTGAAAGTCATCCTCAACACTAAGCTCTGGCCCCACACACACCTGCGTCGCCCCGCACGTCGGAACCTCCAGGTGACGGCCACCGACGTGGAGACCCAGGCCATCCGGGTGTTCCTCATCCAGGCCAGCGCCAGGGACGTGGCTCGCCTCTACGTAGCCATCCACCATCGGCTGGTAGCCCTACGGGCCAGTGCTGCTGGGCTGGAGGCAGGGGCTGCAGGGGGCAGGACCAGGGAGGGACACTGCAACAGTgagaatgaggaagaggAGAACGAGAAGGGCTGCTAGTGACACGATTGCGACCTGTGGTTTGTGATTGGATACACAGTAAACCCAGTTTGGAATCTTGGTGACATGACATTATACTGACCTGGACCATGCAACAGTTTGTGGTGTCATCACATCTGAACAGAACTTTTAACCATCATGGAACAAAACATCAAGAGACCACTTTCAAAAATACATACTAGCATTTACTGAGCTACCATGACTACCCTTTGCCAAAAGAAcatacattaccaaaagtatgtggacacctgcttgtcgaacagctgattccaaaatcatgggcattgatatggagttggttccccc

Function

NR:

description
ran-binding protein 3-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977469.1 False 2007 mRNA 0.51 13 39297942 39317727
XM_021602788.2 False 2086 mRNA 0.51 14 39297947 39317727
XM_021602789.2 False 1992 mRNA 0.51 14 39297951 39317727
XM_036977470.1 False 1831 mRNA 0.52 14 39309524 39317727
TU452179 True 829 TUCP 0.54 5 39314334 39317715

Neighbor

gene id symbol gene type direction distance location
LOC110522932 LOC106563304 coding upstream 106455 39190465 ~ 39191487 (+)
rfx3 LOC106563985 coding upstream 233433 39008047 ~ 39067301 (+)
glis3 LOC106564006 coding upstream 292126 38973438 ~ 39005816 (+)
bmpr1bb LOC106564072 coding upstream 616773 38569703 ~ 38681169 (+)
pdlim5b LOC106564051 coding upstream 728788 38496984 ~ 38569154 (+)
LOC110523778 NA coding downstream 5914 39323641 ~ 39327183 (+)
nadk2 LOC106563865 coding downstream 13430 39331157 ~ 39338343 (+)
LOC110523779 LOC106563815 coding downstream 29382 39347109 ~ 39371739 (+)
LOC100653455 LOC106563802 coding downstream 61401 39379128 ~ 39390166 (+)
cfap53 cfap53 coding downstream 87674 39405401 ~ 39409687 (+)
G398577 NA non-coding upstream 13540 39283586 ~ 39284402 (+)
G398548 LOC106563918 non-coding upstream 96455 39198861 ~ 39201487 (+)
G398518 LOC107373903 non-coding upstream 146874 39150527 ~ 39151068 (+)
G398516 NA non-coding upstream 148603 39148526 ~ 39149339 (+)
G398511 NA non-coding upstream 156730 39140975 ~ 39141212 (+)
G398571 NA non-coding downstream 1965 39319692 ~ 39320238 (+)
G398717 NA non-coding downstream 188307 39506034 ~ 39506363 (+)
G398776 NA non-coding downstream 298033 39615760 ~ 39615978 (+)
nkx6.1 nkx6-1 non-coding downstream 316924 39631643 ~ 39635104 (+)
G399097 NA non-coding downstream 328795 39646522 ~ 39646795 (+)
srsf9 sfrs9 other upstream 1376706 37917781 ~ 37921282 (+)
m17 m17 other upstream 1887043 37409195 ~ 37411565 (+)
G396022 kdm2b other upstream 2332290 36965084 ~ 36965652 (+)
G395034 NA other upstream 2996652 36280300 ~ 36301290 (+)
G395005 LOC106564805 other upstream 3091326 36202901 ~ 36206616 (+)
G399169 gpat3 other downstream 444389 39762116 ~ 39765843 (+)
G399919 NA other downstream 1124028 40441755 ~ 40442086 (+)
G400154 NA other downstream 1547202 40864929 ~ 40881126 (+)
G400267 LOC106561151 other downstream 1787797 41105524 ~ 41106754 (+)
LOC110523840 LOC106562575 other downstream 2044269 41343546 ~ 41370262 (+)

Expression


Co-expression Network