LOC100653455 (LOC106563802)


Basic Information

Item Value
gene id LOC100653455
gene name LOC106563802
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 39379128 ~ 39390166 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602794.2
ATAAAGAACCTGGATGTGGCCCAAAGACTGACTGGGTTAGTAACATGTAAGACAATTTATGACATAACACAATGGATGGCTAATTTGTCATATTGCATTGATATTTGATATTATTTATAACGTGTTACGCtttgtttgaagtcagtaggtcacatgaccaaggagctattgaaattcgaaTTTAAAAGAACGTTGTACTTTGTTTACGCTCCCTACCGAATTAAACTAGGAATACAAAATGCTGCTcacatttccacatgtttattagctTTGGAAAATGAATTAATGTCCAAATCGGGAATATAAGACCTGTACAATGTTGTGCGCAATTTTTCCAACAGCATGACACTTATTTGGGGGctgtggctcaagtggtttgaaagcgCGAATATCCAACTTAAAACTGTTTTTACCTCGGTTAAGTAATTTACGTATCGGGTAATCACATAAtgtgttatagcaatctgtcagcCGATGAGAGAGGGGTTTCGCTTTCTCAACCTTTTCTTTAGGTCTAAAAAGCAGTCTGATCCTATGACTTTCATGATAGATAGTATTTCCTGTATTGTATCATGTTTTCACTAAACGAGTTAGCAAGAAAAACGTCAGCCTGGAGAAAAATGTCAATGTGCCAAACTTATTTTTTTTCCACATTGCTTTTACAAGAAAGACCTCCCCCTAACAACTCCTCCAGTTCCCAACGCTTTGCCAAGCTGTATCTTTGTAGTACAGCACGTTGGCCAGCCTAAATGAACCACactttaatattttttttctgaggaTACAAACTCATGGTATAGTGGGTTAGCTGACAACGTTACGAAAACGAAGCGCACTCTTCAATGGGGCAGGACAGTCTGTgagttgtgattctggatggccagatagctaccaACAACCATGTGGGGAATTttgcacaCGCtttggttttgttgctaaacaaccaaccaaccagtctATGGGCAAACCCAACAACTATCCCGACCAGAAACTACTGAGGCTGACTATAGACCAACACCTCACCACAGCATATTTTATGGGAGTAACATGTTGGTTTTCCTGCTATGGGCTTCACTGTTCCTCTCAAGCCTCCAAGAACAAAATGGTCAAGATGCTCCAGGTGTTCTGCTTTCTGGACCTCAGAATGTGAGTGTGAATTATGACCTAAAAGACCAGAGGATATCTGTAACATGGGAAGATGACCCATCTTCCTCCAGAGTACCGGACAAACTGATTTATGATGTGGAGGTTCTCTTAACAGTCAATATGACTGAAGTACACAGTGAAGCTGTGGATGTGAGACAAGCCCTCGCCAGCAGGAAATACCACTGGAGTTGGACCTCGGCTTTACCCCTAGAGTGCACCTCCCACTCAGTCAGGCTCCGCTCCCGATACCAGAACTACACCAGTCAATGGAGCCCCCTACTGACCATCACTGGGAGGGCCTCAACACATCCACAGGTTTtcccaaaaagcagcgtggttcAAGTCGATAGCAACTTTACTTTCTGCTGTATTCTTGGGCCAGGGCAGAGACTTGAATACATGAAATACAACAACATTCTAATGAACACCACCCACATCATTGACCAGAGTTATGCCATGGTGGTGCATATGCAGTCTCCCTCTCCACCCAGTTGCATCAATGTCTATTGTAATTCACCTCTGTATGGCACCTGTGTTTACGTGGGATACCCCCCTGGGGACAGGAACCTTGTGTGTGAGACCCGGGACCTGGAGTCAGTGGAGTGTCACTGGGACACAGGGAGGGCCACCAACCTGACTAAACAGAGGATGACTCGTTATGACCTGAATGGAAGAGCTTGTCCAAACAGAACAGTCTCAAACTGCTACCAAACAGTACGAGTGGATCAGGGGGAGAGGAATTGGACATTGACTGCCAGAAACCCGCTCGGCACACTGGAGCTCAGAGACACAGCAGACCTGAAGAAAAGAGTGCGTTTACTAGCTCCCATGGAAGTGCTGGCTTCAGGTGTGAATGCCAGTGTTCAGTGGCAGTGGGAAAGACCGCAGTACCATATACTATTAATGGTTTGCCAAGTACAGCTGAACCATAGTGGGCACATAGACGTGAGGAACTTTTCTGGCATAGGTCTTAGGTCAGTAGTTTTACATGGCCTAGCACCTGCCCAGACATACACAGTGCAGGTGTGTTGTGGATTGAAACAGCACTTCTGGAAATGGGGCGACTGGAGTGAAGGTAGCACCTTCAAAACCGAAGAGGACATTCCTGAAATGTTAGATGTATGGATGCAGATTGAAGGGAACCAAACCATGATACTATGGAAACCCCTTACAGTGAATCAGAGTCATGGGCAGATCAAGGACTATGAGGTGACCTGGGGAAGGCAGGAGACAATTCTCCATCCACCTCAGAATGACTTTCTCATCAGTGATCGATCCACTGATGAGGGGCATAGGGTCACAGTTACAGCCAAAAACTCTGCTGGCAGCTCCCTTCCCTCGATCATCATTATTCCTAGACTTCCTCACAGAAGTAAAAGCTCCATGAAAATTGTTGGCAGTGATGGTGGGTTTAACCTATCCTGGTCCGCTAGCCCCAATTCTAGCTGTGGCTACGTGGTGGACTGGTGTCCCACACATAAAAAATGCAGAGTGGAGTGGGTGAAGGTACCAGCTGGTATAACCAGGGCCAGAATCCAATCAGCTAGCTTTGAAGAGGGGGTGAGGTACACACTCTCCATCTTTGCCTGTACTCCAGGGGCTCCAGAGCtatgggagagaagggagggctATGTAAAAGAGTGCCTTCCAAAAGGACAGATTCAGAGGTTGGCTGCAGAACAATATGGTTCGGACACGGTTCTGATCTCCTGGACTGCTATTCCCCCGGAGAGTCAGACGGCGTTCATTCATGGTTACATCATATACTACTGTGATACTTCCCATCTTTCCAGCATGAGAATTTTCAATGTCACTACAGATGAGCTTGGGGCCAAGAATCTGACAGGCATACCCGTCAGCTCCTACAGATTCATAGTGAAGGCCCTCACATCAGTAGGGGAGGGCGGAGACTCTTCACCAGTCTTCCTCCAGATGAACCCCCAGACTGATCAGTTGATCACAGTGATTATAATTTCCCTGGGTTCAGCTGCCTGTCTCCTCGCTCTGGTCACCATCTTATGCTACAGAAACTGGAAATGTGTGAAAGAGAACATGTATCCTAAAATTCCAAAGCCAGTATGGAAGGAGGAATGGTTGACACCACTGGAGAGCAATGGCCGCCAAATCCTCTATGTGGATCCATGTCAACCCAGTGAGATTGATATAGTGTGTAACCGAGAGCAGTCTGGAGAAGCTGTACTAGATAACAATGCTGGAAAGGGTGCCTTAACCAACACAAACTCCGATGTCCCAGCTCTGCATGTATACTACAACCAGCTCCTCACCAAGACCACTTCAGGACACTTTACCTTCTCTCCTCACACGATGGCGACCCCATTCTCTCAACTCTCAGGCACAGTAATTCAGAACCCCTCATACAACCTAGAAGTACAGGCTAGTTTAGATATGGGACAGTCTGTGGGATATGAGCCAGATATGAACTCTTTCTCCTGTCCTAACCCTGAACTACACAACACCATGTCTTATGTGCCCTTTGAGACTGATTCCCGGGGTTACAAGTTCCAGTGTCACATAGAAGACAGCTCTCCTCTCCAGGAGTAGAACTTCTGGGCAGCCCTATTTTCTTCAGCTCCACtcaattcatatttttgttccaGCACTAACACAGCTAAGACCACCAATTAAGATTGGGCCATGATTGCACTGCTGGAAATAAAAGTGGCTTATCAAACAGAAATAA
>XM_021602795.2
AAACTACTGAGGCTGACTATAGACCAACACCTCACCACAGCATATTTTATGGGAGTAACATGTTGGTTTTCCTGCTATGGGCTTCACTGTTCCTCTCAAGCCTCCAAGAACAAAATGGTCAAGATGGAAGCTGTGGATGTGAGACAAGCCCTCGCCAGCAGGAAATACCACTGGAGTTGGACCTCGGCTTTACCCCTAGAGTGCACCTCCCACTCAGTCAGGCTCCGCTCCCGATACCAGAACTACACCAGTCAATGGAGCCCCCTACTGACCATCACTGGGAGGGCCTCAACACATCCACAGGTTTtcccaaaaagcagcgtggttcAAGTCGATAGCAACTTTACTTTCTGCTGTATTCTTGGGCCAGGGCAGAGACTTGAATACATGAAATACAACAACATTCTAATGAACACCACCCACATCATTGACCAGAGTTATGCCATGGTGGTGCATATGCAGTCTCCCTCTCCACCCAGTTGCATCAATGTCTATTGTAATTCACCTCTGTATGGCACCTGTGTTTACGTGGGATACCCCCCTGGGGACAGGAACCTTGTGTGTGAGACCCGGGACCTGGAGTCAGTGGAGTGTCACTGGGACACAGGGAGGGCCACCAACCTGACTAAACAGAGGATGACTCGTTATGACCTGAATGGAAGAGCTTGTCCAAACAGAACAGTCTCAAACTGCTACCAAACAGTACGAGTGGATCAGGGGGAGAGGAATTGGACATTGACTGCCAGAAACCCGCTCGGCACACTGGAGCTCAGAGACACAGCAGACCTGAAGAAAAGAGTGCGTTTACTAGCTCCCATGGAAGTGCTGGCTTCAGGTGTGAATGCCAGTGTTCAGTGGCAGTGGGAAAGACCGCAGTACCATATACTATTAATGGTTTGCCAAGTACAGCTGAACCATAGTGGGCACATAGACGTGAGGAACTTTTCTGGCATAGGTCTTAGGTCAGTAGTTTTACATGGCCTAGCACCTGCCCAGACATACACAGTGCAGGTGTGTTGTGGATTGAAACAGCACTTCTGGAAATGGGGCGACTGGAGTGAAGGTAGCACCTTCAAAACCGAAGAGGACATTCCTGAAATGTTAGATGTATGGATGCAGATTGAAGGGAACCAAACCATGATACTATGGAAACCCCTTACAGTGAATCAGAGTCATGGGCAGATCAAGGACTATGAGGTGACCTGGGGAAGGCAGGAGACAATTCTCCATCCACCTCAGAATGACTTTCTCATCAGTGATCGATCCACTGATGAGGGGCATAGGGTCACAGTTACAGCCAAAAACTCTGCTGGCAGCTCCCTTCCCTCGATCATCATTATTCCTAGACTTCCTCACAGAAGTAAAAGCTCCATGAAAATTGTTGGCAGTGATGGTGGGTTTAACCTATCCTGGTCCGCTAGCCCCAATTCTAGCTGTGGCTACGTGGTGGACTGGTGTCCCACACATAAAAAATGCAGAGTGGAGTGGGTGAAGGTACCAGCTGGTATAACCAGGGCCAGAATCCAATCAGCTAGCTTTGAAGAGGGGGTGAGGTACACACTCTCCATCTTTGCCTGTACTCCAGGGGCTCCAGAGCtatgggagagaagggagggctATGTAAAAGAGTGCCTTCCAAAAGGACAGATTCAGAGGTTGGCTGCAGAACAATATGGTTCGGACACGGTTCTGATCTCCTGGACTGCTATTCCCCCGGAGAGTCAGACGGCGTTCATTCATGGTTACATCATATACTACTGTGATACTTCCCATCTTTCCAGCATGAGAATTTTCAATGTCACTACAGATGAGCTTGGGGCCAAGAATCTGACAGGCATACCCGTCAGCTCCTACAGATTCATAGTGAAGGCCCTCACATCAGTAGGGGAGGGCGGAGACTCTTCACCAGTCTTCCTCCAGATGAACCCCCAGACTGATCAGTTGATCACAGTGATTATAATTTCCCTGGGTTCAGCTGCCTGTCTCCTCGCTCTGGTCACCATCTTATGCTACAGAAACTGGAAATGTGTGAAAGAGAACATGTATCCTAAAATTCCAAAGCCAGTATGGAAGGAGGAATGGTTGACACCACTGGAGAGCAATGGCCGCCAAATCCTCTATGTGGATCCATGTCAACCCAGTGAGATTGATATAGTGTGTAACCGAGAGCAGTCTGGAGAAGCTGTACTAGATAACAATGCTGGAAAGGGTGCCTTAACCAACACAAACTCCGATGTCCCAGCTCTGCATGTATACTACAACCAGCTCCTCACCAAGACCACTTCAGGACACTTTACCTTCTCTCCTCACACGATGGCGACCCCATTCTCTCAACTCTCAGGCACAGTAATTCAGAACCCCTCATACAACCTAGAAGTACAGGCTAGTTTAGATATGGGACAGTCTGTGGGATATGAGCCAGATATGAACTCTTTCTCCTGTCCTAACCCTGAACTACACAACACCATGTCTTATGTGCCCTTTGAGACTGATTCCCGGGGTTACAAGTTCCAGTGTCACATAGAAGACAGCTCTCCTCTCCAGGAGTAGAACTTCTGGGCAGCCCTATTTTCTTCAGCTCCACtcaattcatatttttgttccaGCACTAACACAGCTAAGACCACCAATTAAGATTGGGCCATGATTGCACTGCTGGAAATAAAAGTGGCTTATCAAACAGAAATAA

Function

NR:

description
leukemia inhibitory factor receptor isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602794.2 False 3847 mRNA 0.46 17 39379128 39390166
XM_021602795.2 True 2689 mRNA 0.48 15 39380401 39390166

Neighbor

gene id symbol gene type direction distance location
LOC110523779 LOC106563815 coding upstream 7389 39347109 ~ 39371739 (+)
nadk2 LOC106563865 coding upstream 40785 39331157 ~ 39338343 (+)
LOC110523778 NA coding upstream 51945 39323641 ~ 39327183 (+)
LOC110523777 LOC106563114 coding upstream 61401 39297942 ~ 39317727 (+)
LOC110522932 LOC106563304 coding upstream 187641 39190465 ~ 39191487 (+)
cfap53 cfap53 coding downstream 15235 39405401 ~ 39409687 (+)
myo5b LOC106563782 coding downstream 21214 39411380 ~ 39502640 (+)
il7r LOC106563758 coding downstream 120116 39510282 ~ 39521869 (+)
LOC110523785 LOC106563715 coding downstream 182592 39572758 ~ 39577381 (+)
eri1 LOC106563692 coding downstream 191626 39581792 ~ 39584528 (+)
G398635 NA non-coding upstream 39930 39317270 ~ 39339198 (+)
G398571 NA non-coding upstream 58890 39319692 ~ 39320238 (+)
G398577 NA non-coding upstream 94726 39283586 ~ 39284402 (+)
G398548 LOC106563918 non-coding upstream 177641 39198861 ~ 39201487 (+)
G398518 LOC107373903 non-coding upstream 228060 39150527 ~ 39151068 (+)
G398717 NA non-coding downstream 115868 39506034 ~ 39506363 (+)
G398776 NA non-coding downstream 225594 39615760 ~ 39615978 (+)
nkx6.1 nkx6-1 non-coding downstream 244485 39631643 ~ 39635104 (+)
G399097 NA non-coding downstream 256356 39646522 ~ 39646795 (+)
G399110 NA non-coding downstream 269539 39659705 ~ 39659922 (+)
srsf9 sfrs9 other upstream 1457892 37917781 ~ 37921282 (+)
m17 m17 other upstream 1968229 37409195 ~ 37411565 (+)
G396022 kdm2b other upstream 2413476 36965084 ~ 36965652 (+)
G395034 NA other upstream 3077838 36280300 ~ 36301290 (+)
G399169 gpat3 other downstream 371950 39762116 ~ 39765843 (+)
G399919 NA other downstream 1051589 40441755 ~ 40442086 (+)
G400154 NA other downstream 1474763 40864929 ~ 40881126 (+)
G400267 LOC106561151 other downstream 1715358 41105524 ~ 41106754 (+)
LOC110523840 LOC106562575 other downstream 1971830 41343546 ~ 41370262 (+)

Expression


Co-expression Network