cfap53 (cfap53)


Basic Information

Item Value
gene id cfap53
gene name cfap53
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 39405401 ~ 39409687 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602796.2
tccgagagcgaaacgctctgactttacaaacggacaatgacaacgctctgaatttacgagcgGACTCTGGCACTCAAGGTTGGATTTAAGAACACACCCGAAGTCGTAAAATGTCTAACTAGTAATTTgttacgctaactagctagcaagaggttgcatagcaataGCATCAACTTCCGGTTATCCGGCGAAGagctagtacgctcaactgaaagatACTGTtccgtttacagtatactaaaattaacttatagtatgtagtatatactcattaaatatgtagaatacagtatgttagtatgggtattcgaacacggCGCCAGTGATCAACTCCTACAGCATGTTTTGTAGTTGTCATGGTAACAATTTACTAGTTCCGTCAACAAAATCGCCGGAGAGACTCCTCGTCAAGGTCCATGAAACAGTTGGGAAACTTGATGGGATGCAGGACAAATAGAAGTATCTGGCTGGGAAGGAGCTTGTTTTGTATCCAAGTATGTTGGCCAGTCAGACTAGAAATAAACCACAATGTCGCGAGTTTACGGGACCAACACCTCATTCAGTGGCTGTGAGGGCAAGGTTCCCATCATCCAGGCCTCCAGACTACCTCATCCTGGAGAGAAGGAAACAGGAGGAGGCCCGGGACAAGGTGTTGGAGTTCACCAAGTACCAGAACACCTGTGACCTTAAGACGCGCTGGGAGAAGAACTCTGACCGGCGTATTGTGTTGGGAACCATTGAGAGACGGGTCAAAGATGCCATTGGGCAGTATCAGATGACCATCAATGAGAGGAGGGATAGACTGCATGATATGTTGGAGGCAGAGGAGAAGGAACTGCTGAGAGAAATGGAGACCAAGAAGGAGACAGTACTGGAGAGACAAGCCAAGATGCGAGAGAGAGCTAAGTTACtgcgagagaggagggagagtgaaagactAAGTGTGGTTGAAGACAAGCTTGAACAGCTATTCAGAGAGCAGAGTGAGGAGCTCCGGACTGAACAGACTCGGCGCAGGCAGAACGAAATTTGCACAGAGCGGGCTGCGCAGCTATGTACACGGCAGGTGACGCAGCggcagaaagaggaggaggagcagctctTTGCTCAGCTGTGGGAGAGCGACCGGCAAGCCAAGGAGGAGCGGGAGGGCCAGGATGCGCAGAGGCAACGCCAGAGTAACTTGCAGCAGCTGGTCTACCTGCGCGTCCAGATGGAGGCTGCcgagcagcagagagaacaggccaAGCAGCTCAAAGAGGAAGAGGCCCTGCTACTGagggagcagagagagatgctgcatctggaggagcagagagagcaccGTCATAAGCTCCAAGGTCAGGAGAGCCGGCGCAGGCTGCTCGACCACTCTCTGAGGCTGAAGATGAAGCGCCAGGCCAGGGAGCAGCAGGACGAGCTGGCCCTGGACATGAGCATGCTCGAGCAGCTGCTgacggaggagagagatgagaaacaGGGCAAGGTCACGAGGAAGCTTGAACTGCGAGAGGAGCAGAGTAGGTACCAGCAGTACCTGGCCGATCAGCTTGAGGAGCAGAAGAGACaggaggtggagacagagaagCTGATCGAGGCAGAGCTAAAGCAGACCTGGGCCCGGAGGGCAGAGCAGTGTCACAAAGAGAAACAAGCCAGGGATAGGCTGATGAAGGATGTGATGGACACACGCCGCCTGCAGATACAGGAGAAATTGGATTTGAACAAGCAGAAACAGGCTCAGCTGGCCGAGGAGAGAGACGAGCTAAACAAAACCATACAGGAGAACAAACtgctggatgagagagagaaaactcgTCTGAGACAGGGCTGTCAGGAGTTTCAGACAGACCTGCTGGCCCAGATGATGTACCAGCAGCAGTTGCGTGATGAGGGGAGATCTCAGACAGAGCAGGAGCACCAGCAAGGCCTGGTCTACCAGGAGCAGTACAACAGGAAGATGCAGGAGATCCTCTCCAGGCCTACCTCACACACCAGGGCTGTCCACCCCTTCAGGAGAACCTCTTCCACTAACCCACAGGGACAGTTTAGCTTGGAGTAACCTAGCATGTGAAGTAAAGCAAATGCATTTATGGCCTGGCTCGGCAGGGAACACATACTTTCGTAattcagacaacacacacacaaacgaatCTCTAAAAATCATACGCCTGATCCTGTCTTACCTCACAAACATACATCTCCGGCAAGTGCTTTATGTGTAATCCTCTTAAGACAAATCCGAAATTAGCTGTCCCAAGTTTCTCAGAAAATGGCTAATGGATATTAAATGCAAATAAAATAAGTTTAATCATATTTTTGATTTCAGAAAAAATGTCTATTTTGCTCCATGGCAGAGTGCTATATTGCAAACATTGATGGAGGATTTCCCCAGGAACAAAGCTGTTCATATTTTGTTCAGTAGGTAGtgctgaaaatgtattttttcagTTCAATTTCAGGAACTCTTTATGAGCATGTTGTTGGTATATTGAATGTACCTAATTTAAGGATAAGTCGATTTTCAATTTAATAATATTACTGTGGAGGCCTGCCTGCATACACTTCAAGAAAGCAGTGTCTTTCTGGATTTCATTGTAATGTAATATCACGTGATGGCAAACATAACGTTGTTGGA

Function

symbol description
cfap53 Acts upstream of or within cilium assembly and epithelial cilium movement involved in determination of left/right asymmetry. Located in axoneme and ciliary base. Is expressed in several structures, including Kupffer's vesicle; forerunner cell group; otic placode; pronephros; and spinal cord neural tube. Used to study visceral heterotaxy. Human ortholog(s) of this gene implicated in visceral heterotaxy. Orthologous to human CFAP53 (cilia and flagella associated protein 53).

NR:

description
cilia- and flagella-associated protein 53

GO: NA

KEGG:

id description
K24225 CFAP53; cilia- and flagella-associated protein 53

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602796.2 True 2638 mRNA 0.49 8 39405401 39409687

Neighbor

gene id symbol gene type direction distance location
LOC100653455 LOC106563802 coding upstream 15235 39379128 ~ 39390166 (+)
LOC110523779 LOC106563815 coding upstream 33662 39347109 ~ 39371739 (+)
nadk2 LOC106563865 coding upstream 67058 39331157 ~ 39338343 (+)
LOC110523778 NA coding upstream 78218 39323641 ~ 39327183 (+)
LOC110523777 LOC106563114 coding upstream 87674 39297942 ~ 39317727 (+)
myo5b LOC106563782 coding downstream 1693 39411380 ~ 39502640 (+)
il7r LOC106563758 coding downstream 100595 39510282 ~ 39521869 (+)
LOC110523785 LOC106563715 coding downstream 163071 39572758 ~ 39577381 (+)
eri1 LOC106563692 coding downstream 172105 39581792 ~ 39584528 (+)
mfhas1 LOC106563686 coding downstream 175830 39585517 ~ 39612603 (+)
G398635 NA non-coding upstream 66203 39317270 ~ 39339198 (+)
G398571 NA non-coding upstream 85163 39319692 ~ 39320238 (+)
G398577 NA non-coding upstream 120999 39283586 ~ 39284402 (+)
G398548 LOC106563918 non-coding upstream 203914 39198861 ~ 39201487 (+)
G398518 LOC107373903 non-coding upstream 254333 39150527 ~ 39151068 (+)
G398717 NA non-coding downstream 96347 39506034 ~ 39506363 (+)
G398776 NA non-coding downstream 206073 39615760 ~ 39615978 (+)
nkx6.1 nkx6-1 non-coding downstream 224964 39631643 ~ 39635104 (+)
G399097 NA non-coding downstream 236835 39646522 ~ 39646795 (+)
G399110 NA non-coding downstream 250018 39659705 ~ 39659922 (+)
srsf9 sfrs9 other upstream 1484165 37917781 ~ 37921282 (+)
m17 m17 other upstream 1994502 37409195 ~ 37411565 (+)
G396022 kdm2b other upstream 2439749 36965084 ~ 36965652 (+)
G395034 NA other upstream 3104111 36280300 ~ 36301290 (+)
G399169 gpat3 other downstream 352429 39762116 ~ 39765843 (+)
G399919 NA other downstream 1032068 40441755 ~ 40442086 (+)
G400154 NA other downstream 1455242 40864929 ~ 40881126 (+)
G400267 LOC106561151 other downstream 1695837 41105524 ~ 41106754 (+)
LOC110523840 LOC106562575 other downstream 1952309 41343546 ~ 41370262 (+)

Expression


Co-expression Network