LOC110524079 (atpaf1)


Basic Information

Item Value
gene id LOC110524079
gene name atpaf1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 55827207 ~ 55838164 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603397.2
TTCTTCACGGCGCTTTATTTATGTGCGACAACGACGAAGGAAATATGGCGGCGGCCATGGTGCAAATGTCTTGTTTGTACCGTGGGATGCTAGCGGTCAGGGCAACTGGAATACGACCGCTCATCCCAGGTCTGGTGCCGTCGCATTTTAGAGCATTTTCtgtgaagaaagagaaagagccgGAATTGGAAGACAATCcatattataataaatatcaggaAAAGATAAAGAAACTACGAAATGCCAACCCTCAGGAGTTCAATGCTCGGCTCGAGAAGCGAATTGAAGTCAAGAGGGAGCCTCTTGGACACTCTAAACAAGCAGAGTTTGTCAAAGTCATGGAGCAGGAGTTGGAGAAGCGTGACAAGCAGGCTGATGGTTCAGGCAGATTCACTAAAGACAAGACCCTAGGATCTATCCTGAACTTGGACTTGATCCAGGATAATTCAGGAGAAGAAATTGCGGAGCTGTGGAGGCAGTATTATGCCACAAAAGACACCATCAGTGCTGTCATACCAGCTCACATTTTTGAAGTAATTTTCAACCGAGCTAAGTCGAACCCCGCGTTCCTGTATGCGTTACCCCAGAAGGAGGGCTATGAGTTCTTCCTGGGCCAGTGGTCGGACCACGAGCTCCATTTCACCTCCCTCATCAATGTCCAGACCATGGGAGAGCACGCCCCCAGTCAGTTGATCCTCTACCACTACTCAGACTTGCAGAAGGATAAGGGTGTGGTGCTCATGACTGCTGAGATGGATCCTAAGTTTATGACTGTACATCTGGCTCAGTGCTTGGCCAATCAGGTGCAGCTGTTCTACGGAACCCAGCGGCAGGAGACCTTCCGATTGGTGGAGACCTTTAACCACAAACCAACCGACTTCAAACACACGGCAGTGATCGCTGAGTTGGAACAGAGTGGCATCAATCCTGCACTCACCTCTGGAAACTAGATCTAAGAGTTGTCGGACTGTAAAATGATGCTACAATTCACCACAGGATTGGAATTGCCAGGGGACATGGTCATTCATTTGGAGCCTCTTGCGTTTGCGGGGGATAATGGATGAAGTCTGTTGCTTGGGACTTATGACCTAGTTGAGCAGATTCATCAGTCAAAATGTATGCTAAATTCCTGGGCATAGATGATGTAATGAGTCAATGTTATTTAATCTCAATGTTCTTCCTCACCTCGCCCCTGTTAATCTTACAGATGCACTTGACCGTAGTCTCATCTTCCATTTTTAGAGCCTAGGTTACGTCCCAAaagccaccctattccctaaagattgcatttgaccagagccctatgagcccaggtcagattagggtgccatttgggacactatcccagtattttgtgttttctggtCGAAATATGCTTTTTATTTTTGTGTAAAATAACTGCAGGAATTTTGCTTTCAAAACATAAGGGAGTGTACAAAGATTGTGTACATACATACCTATCTAGCTTTGTGGTTGACACATGGATGAACTGTGTGTggatacagtaaaaaaaaaaaatggttagaCAA
>XM_021603398.2
AAAGTAAGCGCTAAGTCAAACGCTAGCAAATATTAGTTAGCACCAGGCTAATATGCTAACTAGTTTGGTGTGCAACTCCCACTGTTTGTCACTGGATAATGAACAGGGAAATGAAATAACAAGGTGTAACAACCATGGTGCCAACCCTCAGGAGTTCAATGCTCGGCTCGAGAAGCGAATTGAAGTCAAGAGGGAGCCTCTTGGACACTCTAAACAAGCAGAGTTTGTCAAAGTCATGGAGCAGGAGTTGGAGAAGCGTGACAAGCAGGCTGATGGTTCAGGCAGATTCACTAAAGACAAGACCCTAGGATCTATCCTGAACTTGGACTTGATCCAGGATAATTCAGGAGAAGAAATTGCGGAGCTGTGGAGGCAGTATTATGCCACAAAAGACACCATCAGTGCTGTCATACCAGCTCACATTTTTGAAGTAATTTTCAACCGAGCTAAGTCGAACCCCGCGTTCCTGTATGCGTTACCCCAGAAGGAGGGCTATGAGTTCTTCCTGGGCCAGTGGTCGGACCACGAGCTCCATTTCACCTCCCTCATCAATGTCCAGACCATGGGAGAGCACGCCCCCAGTCAGTTGATCCTCTACCACTACTCAGACTTGCAGAAGGATAAGGGTGTGGTGCTCATGACTGCTGAGATGGATCCTAAGTTTATGACTGTACATCTGGCTCAGTGCTTGGCCAATCAGGTGCAGCTGTTCTACGGAACCCAGCGGCAGGAGACCTTCCGATTGGTGGAGACCTTTAACCACAAACCAACCGACTTCAAACACACGGCAGTGATCGCTGAGTTGGAACAGAGTGGCATCAATCCTGCACTCACCTCTGGAAACTAGATCTAAGAGTTGTCGGACTGTAAAATGATGCTACAATTCACCACAGGATTGGAATTGCCAGGGGACATGGTCATTCATTTGGAGCCTCTTGCGTTTGCGGGGGATAATGGATGAAGTCTGTTGCTTGGGACTTATGACCTAGTTGAGCAGATTCATCAGTCAAAATGTATGCTAAATTCCTGGGCATAGATGATGTAATGAGTCAATGTTATTTAATCTCAATGTTCTTCCTCACCTCGCCCCTGTTAATCTTACAGATGCACTTGACCGTAGTCTCATCTTCCATTTTTAGAGCCTAGGTTACGTCCCAAaagccaccctattccctaaagattgcatttgaccagagccctatgagcccaggtcagattagggtgccatttgggacactatcccagtattttgtgttttctggtCGAAATATGCTTTTTATTTTTGTGTAAAATAACTGCAGGAATTTTGCTTTCAAAACATAAGGGAGTGTACAAAGATTGTGTACATACATACCTATCTAGCTTTGTGGTTGACACATGGATGAACTGTGTGTggatacagtaaaaaaaaaaaatggttagaCAA

Function

symbol description
atpaf1 Predicted to be involved in mitochondrial proton-transporting ATP synthase complex assembly. Predicted to act upstream of or within protein-containing complex assembly. Predicted to be active in mitochondrion. Is expressed in immature eye and optic tectum. Orthologous to human ATPAF1 (ATP synthase mitochondrial F1 complex assembly factor 1).

NR:

description
ATP synthase mitochondrial F1 complex assembly factor 1 isoform X2

GO: NA

KEGG:

id description
K07555 ATPeAF1, ATPAF1, ATP11; ATP synthase mitochondrial F1 complex assembly factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603397.2 False 1529 mRNA 0.46 9 55827207 55838164
XM_021603398.2 True 1426 mRNA 0.45 9 55827445 55838164

Neighbor

gene id symbol gene type direction distance location
LOC110522974 LOC106613563 coding upstream 383 55767976 ~ 55826824 (+)
LOC110524077 tm2d1 coding upstream 322466 55487820 ~ 55504741 (+)
LOC110524076 LOC106613559 coding upstream 558847 55257674 ~ 55268360 (+)
LOC110524074 tal1 coding upstream 572094 55242498 ~ 55255113 (+)
LOC110524073 LOC106613986 coding upstream 587546 55237867 ~ 55239661 (+)
LOC110524081 rab3b coding downstream 396 55838512 ~ 55848072 (+)
LOC110524082 LOC106613566 coding downstream 11049 55849213 ~ 55864861 (+)
LOC110524084 LOC106613569 coding downstream 46715 55884879 ~ 55921055 (+)
LOC110524085 LOC106613570 coding downstream 94813 55932977 ~ 56105281 (+)
LOC110524087 LOC106613571 coding downstream 174973 56013137 ~ 56021533 (+)
G417151 NA non-coding upstream 43540 55783176 ~ 55783667 (+)
G417147 NA non-coding upstream 51983 55775015 ~ 55775224 (+)
G417145 NA non-coding upstream 56474 55770500 ~ 55770733 (+)
G417144 NA non-coding upstream 57302 55769676 ~ 55769905 (+)
G417092 NA non-coding upstream 88842 55736656 ~ 55738365 (+)
G417212 NA non-coding downstream 49873 55888037 ~ 55945283 (+)
G417864 NA non-coding downstream 366780 56204944 ~ 56205176 (+)
G417876 NA non-coding downstream 380617 56218781 ~ 56219103 (+)
G417883 NA non-coding downstream 388701 56226865 ~ 56243791 (+)
G416857 NA other upstream 501936 55324645 ~ 55325271 (+)
G415946 NA other upstream 1214065 54590074 ~ 54613142 (+)
mutyh mutyh other upstream 1476592 54346481 ~ 54395448 (+)
G415809 NA other upstream 1496727 54330080 ~ 54330480 (+)
G415808 NA other upstream 1497427 54329195 ~ 54329780 (+)
G418077 LOC106613582 other downstream 779726 56617890 ~ 56628617 (+)
G418119 LOC106613588 other downstream 888021 56726185 ~ 56729821 (+)
G418251 rtca other downstream 1085760 56923924 ~ 56925176 (+)
LOC100135807 LOC106613594 other downstream 1105674 56943838 ~ 56958165 (+)
LOC110524119 LOC106613607 other downstream 1527200 57352343 ~ 57367627 (+)

Expression


Co-expression Network