LOC110524081 (rab3b)


Basic Information

Item Value
gene id LOC110524081
gene name rab3b
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 55838512 ~ 55848072 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977892.1
TCTGTTCCTACAGAGGAGTGCCGGTCTACACATTTGCTCCGTTCCATTCACAGGAGTTTATCTGTACAACGACTTTTTCTTTACATAAGGAGGTACCGACACTAATGCTAATTGTCCTCCCGCTGCAGAATGACTACCGAAGATGGTTATGGCTGTTTAGTGTAGAGCAGGGTTCTTCACTGGCGGTGGATTTATATGCCCCCACCCTCCAAGTTTGaggaaaaatatttaaaaaatatgttgaattttcattgttggacataaaataatgtaaaaacaccaggaataAGCTCCAAATGATTCGACCCCCCCACCACATGATTGGATAAACTTACAGATCAGGACAGAAGCTGATTCATATAGATATTCAAGAAGTGTTTTGCCAACGAGTTGGCTTGTCAGGTGCATTCAGCGCAGTTCAGTCGCCGAGCCAACGAAAGGAGAACGGAGAGAAAACAACCACCCAGAGAAGATTTAGAGATGGCGAAGGCAGACCAGCGCTTTGGGCAGAGAGATGGCTCCGACCAGAACTTTGACTACATGTTCAAGCTCCTCATCATTGGCAACAGCAGCGTGGGCAAGACCAGCTTCCTGTTCCGCTACGCCGACGACTCCTTCAGCAACTCTTTCGTCAGCACGGTGGGCATCGACTTCAAGGTCAAGACCGTCTACAGGAACGAAAAGAGGGTCAAGCTCCAGATATGGGATACAGCAGGGCAGGAGAGGTACAGGACTATCACCACCGCCTACTACCGTGGAGCCATGGGCTTCATCCTCATGTACGACATCTGCAACGAAGAGTCCTTCAACGCTGTACAGGACTGggctaCCCAGATAAAAACCTACTCGTGGGATAACGCTCAGGTCATCATGGTGGGTAACAAGTGTGACATGGACGAGGAGAGGGTAGTGCCCGCAGAGAAGGGCAAGCACTTGGCTGACCAATTAGggtTCGAGTACTACGAGGCCAGCGCCAAGGAGAACATTAATGTCCGGCAGGTGTTTGAGCGGCTGGTCGACATCATCTGCGTCAAGATGTCCGAACGAGTGGACGTGGAGCCGCCTATGGCCCCCAGCATCAAGACCACAAGGCTCACCGACAAGCCCCCCCAGCTACCTCAGAAGTGCACCTGTGCCTGACTCACACTTATAGGGCCGAGCCAAGCCATGCCGAGCCGAGCTGGGCTGGCCTGGATACCCATCCACCGTAGTTGCTGGAACCGTGCTgcaaaggacaatgtgaaaagaaaatGTTCAGAACAGTCCTGTTCGAGACGGCCCTATAGCGTGAAATAGGTAATACTGATTTGGTCACCCAGTTCTCCCCTAATACACTTGCCATTCCACTACTGGTCTTTTCCTATTCTCTGTCATTACTCTATTACAAGTTCCACCAACCTCTTTCCAAAGGTAGCTCTCCATACAATATATTTCATGACTGCAAGCTCCcaataactactactactactattactttaACATTACATATCTGTTTCACCCCAATAGCTTTGACCTCCAGCTGGTTCAGAGGTCAGAGAACCTTAAGCAGGGTTATACAGGTAAGCACAGcactgcctctctcctcctccaaacaAAAGTGGCTTCACCACCgcacaaagaaacacacacagctgttcACGTTACGAGTTTACACGGGTGAGGAGATAAGCCTTGATAGCTGCAGAAGTTCCGAGTAATTTTGCCTTGTGCTCTTGACCGTCCTACTAACGTTTCACAAGCACTAAAGCTAAGACAAGGGAACGTAATCTGCCCCGTTGATTTTTCATTCTCAACCATATGAAGGGAGTAATAACACTGATAAAACGACAAGATGGCCAATACGTCTTGCACCACCAACACTAAGCCAATGCCAAGTTCAGGGTGTTCTGACATTCTGAGGGACTATAACGTtctagaatatagatgttgattGAAGAGCACAACCTTTTCTCCCTCCTTACCCTTCAGCTAATATAATCTTGTAGCCGTCATGTCAGCCATGTTTACAATGTTTATTTCATGAACGTGTGCGTTTTAGAAAGCAAAGCATATACTGTATAATTGAGTGTTCAGTTGTAACGGTTTTATTAGTGTTTGATGTATCTTGGGCAGATGTGAAATATTGAAATCATGTAATGTCAACTGAGACACATCGAAATACTTTGTGAAATGGGATAAAAACAGAAAATATTGAAtaaatgtgtttaaaaaaatgaTGGATTATAACCTAATGATGACAATGTGAAACATACTTTGCCAAATTTATGTATCGCATAGTAGCACGTTTTTATGTGTAACTTCCCACCATATGTATTTTCGTTTTTTTTATTGAATTGCTAGATTTGCAATAACGCTGACAATGTCTTAATATAATTATTTTCTAAGTAAATTAGTATATTATAGAGTTAGAATCTATAATGGTGTTGCTGAATTTATTTTTATGCTGTATCATGGGAAGAAATATAGACCATTTATGTACACGTGTTACAGTAAACTCCCTGAACAAATGGGAGAAAAGCACAAAGTGATTGTACAAAATATTGTGAATGTTTGTATATTATAGGTAGATGCAATTTAGTATATTAAAGCACAAATCTTTACTTGAA
>TU472827
TCAAAACCGTGCTATTTCCTGTAATTCCGTTCTGTGGTCTGATATGCGTCTGTTCCTACAGAGGAGTGCCGGTCTACACATTTGCTCCGTTCCATTCACAGGAGTTTATCTGTACAACGACTTTTTCTTTACATAAGGAGGTACCGACACTAATGCTAATTGTCCTCCCGCTGCAGAATGACTACCGAAGATGGTTATGGCTGTTTAGTGTAGAGCAGGGTTCTTCACTGGCGGTGGATTTATATGCCCCCACCCTCCAAGTTTGaggaaaaatatttaaaaaatatgttgaattttcattgttggacataaaataatgtaaaaacaccaggaataAGCTCCAAATGATTCGACCCCCCCACCACATGATTGGATAAACTTACAGATCAGGACAGAAGCTGATTCATATAGATATTCAAGAAGTGTTTTGCCAACGAGTTGGCTTGTCAGGTGCATTCAGCGCAGTTCAGTCGCCGAGCCAACGAAAGGAGAACGGAGAGAAAACAACCACCCAGAGAAGATTTAGAGATGGCGAAGGCAGACCAGCGCTTTGGGCAGAGAGATGGCTCCGACCAGAACTTTGACTACATGTTCAAGCTCCTCATCATTGGCAACAGCAGCGTGGGCAAGACCAGCTTCCTGTTCCGCTACGCCGACGACTCCTTCAGCAACTCTTTCGTCAGCACGGTGGGCATCGACTTCAAGGTCAAGACCGTCTACAGGAACGAAAAGAGGGTCAAGCTCCAGATATGGGATACAGCAGGGCAGGAGAGGTACAGGACTATCACCACCGCCTACTACCGTGGAGCCATGGGCTTCATCCTCATGTACGACATCTGCAACGAAGAGTCCTTCAACGCTGTACAGGACTGGTGAGTGGTCTGAGACAccagggctgcatctcaatacttGAAAATGGCTTCCTTTGCTGATCGCCTACTTTCATTACTCACCACTAGTGAAAAGACCCTGATTGGagaaaccgtgtgtgtgtgtgtgtgtgtgtgagcctgtgtgtgtgtgtgagcctgtgtgtgtgtgtgagcctgtgtgtgagcctgtgtgtgtgtgtgtgagcctgtgtgtgtgtttcagggctaCCCAGATAAAAACCTACTCGTGGGATAACGCTCAGGTCATCATGGTGGGTAACAAGTGTGACATGGACGAGGAGAGGGTAGTGCCCGCAGAGAAGGGCAAGCACTTGGCTGACCAATTAGggtTCGAGTACTACGAGGCCAGCGCCAAGGAGAACATTAATGTCCGGCAGGTGTTTGAGCGGCTGGTCGACATCATCTGCGTCAAGATGTCCGAACGAGTGGACGTGGAGCCGCCTATGGCCCCCAGCATCAAGACCACAAGGCTCACCGACAAGCCCCCCCAGCTACCTCAGAAGTGCACCTGTGCCTGACTCACACTTATAGGGCCGAGCCAAGCCATGCCGAGCCGAGCTGGGCTGGCCTGGATACCCATCCACCGTAGTTGCTGGAACCGTGCTgcaaaggacaatgtgaaaagaaaatGTTCAGAACAGTCCTGTTCGAGACGGCCCTATAGCGTGAAATAGGTAATACTGATTTGGTCACCCAGTTCTCCCCTAATACACTTGCCATTCCACTACTGGTCTTTTCCTATTCTCTGTCATTACTCTATTACAAGTTCCACCAACCTCTTTCCAAAGGTAGCTCTCCATACAATATATTTCATGACTGCAAGCTCCcaataactactactactactattactttaACATTACATATCTGTTTCACCCCAATAGCTTTGACCTCCAGCTGGTTCAGAGGTCAGAGAACCTTAAGCAGGGTTATACAGGTAAGCACAGcactgcctctctcctcctccaaacaAAAGTGGCTTCACCACCgcacaaagaaacacacacagctgttcACGTTACGAGTTTACACGGGTGAGGAGATAAGCCTTGATAGCTGCAGAAGTTCCGAGTAATTTTGCCTTGTGCTCTTGACCGTCCTACTAACGTTTCACAAGCACTAAAGCTAAGACAAGGGAACGTAATCTGCCCCGTTGATTTTTCATTCTCAACCATATGAAGGGAGTAATAACACTGATAAAACGACAAGATGGCCAATACGTCTTGCACCACCAACACTAAGCCAATGCCAAGTTCAGGGTGTTCTGACATTCTGAGGGACTATAACGTtctagaatatagatgttgattGAAGAGCACAACCTTTTCTCCCTCCTTACCCTTCAGCTAATATAATCTTGTAGCCGTCATGTCAGCCATGTTTACAATGTTTATTTCATGAACGTGTGCGTTTTAGAAAGCAAAGCATATACTGTATAATTGAGTGTTCAGTTGTAACGGTTTTATTAGTGTTTGATGTATCTTGGGCAGATGTGAAATATTGAAATCATGTAATGTCAACTGAGACACATCGAAATACTTTGTGAAATGGGATAAAAACAGAAAATATTGAAtaaatgtgtttaaaaaaatgaTGGATTATAACCTAATGATGACAATGTGAAACATACTTTGCCAAATTTATGTATCGCATAGTAGCACGTTTTTATGTGTAACTTCCCACCATATGTATTTTCGTTTTTTTTATTGAATTGCTAGATTTGCAATAACGCTGACAATGTCTTAATATAATTATTTTCTAAGTAAATTAGTATATTATAGAGTTAGAATCTATAATGGTGTTGCTGAATTTATTTTTATGCTGTATCATGGGAAGAAATATAGACCATTTATGTACACGTGTTACAGTAAACTCCCTGAACAAATGGGAGAAAAGCACAAAGTGATTGTACAAAATATTGTGAATGTTTGTATATTATAGGTAGATGCAATTTAGTATATTAAAGCACAAATCTTTACTTGAA

Function

symbol description
rab3b Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in protein localization to plasma membrane; regulation of exocytosis; and secretion by cell. Predicted to be active in endosome; plasma membrane; and synaptic vesicle. Orthologous to human RAB3B (RAB3B, member RAS oncogene family).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977892.1 False 2606 mRNA 0.44 5 55838560 55848072
TU472827 True 2877 lncRNA 0.44 4 55838512 55848072

Neighbor

gene id symbol gene type direction distance location
LOC110524079 atpaf1 coding upstream 396 55827207 ~ 55838164 (+)
LOC110522974 LOC106613563 coding upstream 11736 55767976 ~ 55826824 (+)
LOC110524077 tm2d1 coding upstream 333819 55487820 ~ 55504741 (+)
LOC110524076 LOC106613559 coding upstream 570200 55257674 ~ 55268360 (+)
LOC110524074 tal1 coding upstream 583447 55242498 ~ 55255113 (+)
LOC110524082 LOC106613566 coding downstream 1141 55849213 ~ 55864861 (+)
LOC110524084 LOC106613569 coding downstream 36807 55884879 ~ 55921055 (+)
LOC110524085 LOC106613570 coding downstream 84905 55932977 ~ 56105281 (+)
LOC110524087 LOC106613571 coding downstream 165065 56013137 ~ 56021533 (+)
LOC110524091 LOC106613578 coding downstream 657472 56505544 ~ 56525588 (+)
G417151 NA non-coding upstream 54893 55783176 ~ 55783667 (+)
G417147 NA non-coding upstream 63336 55775015 ~ 55775224 (+)
G417145 NA non-coding upstream 67827 55770500 ~ 55770733 (+)
G417144 NA non-coding upstream 68655 55769676 ~ 55769905 (+)
G417092 NA non-coding upstream 100195 55736656 ~ 55738365 (+)
G417212 NA non-coding downstream 39965 55888037 ~ 55945283 (+)
G417864 NA non-coding downstream 356872 56204944 ~ 56205176 (+)
G417876 NA non-coding downstream 370709 56218781 ~ 56219103 (+)
G417883 NA non-coding downstream 378793 56226865 ~ 56243791 (+)
G417882 NA non-coding downstream 392743 56240815 ~ 56243410 (+)
G416857 NA other upstream 513289 55324645 ~ 55325271 (+)
G415946 NA other upstream 1225418 54590074 ~ 54613142 (+)
mutyh mutyh other upstream 1487945 54346481 ~ 54395448 (+)
G415809 NA other upstream 1508080 54330080 ~ 54330480 (+)
G415808 NA other upstream 1508780 54329195 ~ 54329780 (+)
G418077 LOC106613582 other downstream 769818 56617890 ~ 56628617 (+)
G418119 LOC106613588 other downstream 878113 56726185 ~ 56729821 (+)
G418251 rtca other downstream 1075852 56923924 ~ 56925176 (+)
LOC100135807 LOC106613594 other downstream 1095766 56943838 ~ 56958165 (+)
LOC110524119 LOC106613607 other downstream 1517292 57352343 ~ 57367627 (+)

Expression


Co-expression Network