LOC110524142


Basic Information

Item Value
gene id LOC110524142
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58199387 ~ 58205370 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603505.2
ACTGTAGACTGCCATTCAACTCCCTCAGCTCTAAGGGTGGTTAGTTTCATTATTGAGCAAACATACTTGTTCAAACAGTGACTCGCCAGCTCCAGGCATTGAATATGCACGGAATAAAAGATGCAGATCTCCCTGGCCATTCACCAACATCCTGCTTTCAAGGATGTATTAATGTGGGCATGCTGTCAAGTTGACCATCACGTCTATACCTCTAGGGAAACATGGCGGGAGCAACGAGTGTCACTTTATTTCTACCTTTTGTTTTGGTAGCCGTCACTCTAGGGTCCACTGGAGCCCCAAACTTGTCTTCATCGAAGGCTACCAACAAGTCTACCCCAACATTGTCTAGCATCACCACAGTGGTCCCTGCCTCAAAAGCCAGTATAACAAGTCTCATAGTCAGTAAAACACTTGATTCAGCTCCTACTGGTAACACTGAAGTCCCATTGGAATCATCACCGACAACTGAGCGCTCCCAatcctctcagacactgactccATCAAAAGCATCCGATGGTAGCACCACCTCTACAGGTTTTACAGCTGACACTTCTACAAATCAGACCCAAACTGGAACAACTTCTCATGACTCCACATCCTCAAACTTCTCGTCAACTTTGTCACCAAACTCTGATTTTACCACAGGGAACATGAGCTCAAGCACAGCTTTACAAAGTGATGGGAGCCATGACTTATCAAGGAGTCCGGGTCTTGTAGCAGTCCTATGCATATTTTGCATCTGTCTGGGTCTTCTACTGGCTGTTGGGATTGCAAAGTTCATTAATTCCAGAGGTTCAAAGTTTGAGAGGCTCGAAGATGTGCCAATGGGCAAGATGAATGAAGAGTCTCCATTTGCCCGTTCTCCAACAAAACAATTCTGAAAGATAACACATCATGAGACAAAGCCATTGACCCAGAACTGATAGAATGTAAATCAGTCTTTTGTTTGGGTTCAGATGGTGCCGTTCATGACATGTCATCCACCATCATGTTTTTTTCCTGTctttgtttgttttgtctggCTGCTGGAAAGTGACAAATGTTTGAAAGAAATCAGTATAGCCCAAGGCTACAATCAACCCTGTGATGTAGTACAGAATATCTACTCTGAGGTTGGTCAGCAGCATACTAAAGTTGATCATTGGCCCAAGGTGAAGTACTATTCATTCACAGATGGATGGATGCGTCAAGAACCATAATGTAGAAGATGCACAGACAATGGCTGCgcttacacaggcagcccaattctgcaCTTTTGTCCAATTATTGCAAaaagatctgatctgatctgattggtcaaaagcccaattattggcaaatgTACAGAATTGGGTTATCTGGAATTCTACGTCTGGTAGAAATGTGTTTGGATAAGGAAAGTTTCCTGAGAGAAACTCAAAAATGTTTATTGCCTATTGCACATTGTTTATTGCATATTGCCCGATGATCTTCTGAACTTCCCAATACCTTTTtgatgcatttcagtcacttcaaaccaTACTTCCATCACATTTGAATAATGTCAAAAGTACTGTCcaactgatttgtaatagactgtcatagcTCCAATTTAAAAAGTAAACATTAGCTGTTGATTACATCACTTTTTTTTATCTAATGGGGTTAGCAGCCTAAAAACTTTGGGAAACCATACTCTACCCGCTGTTGGTTCTTTTGACTTTAGGAATGCCAGACAATATATCCGCAGGAAAGTATAATCCAATAAAGTTACCAAAGCACTGGTAGTGCGTTCCGATTTCTATCACCTGAAGCATGCACCGAACTATGTAAACGCGTGCATGAGCTTGGCAAGTATCATGCCTGTATTTGCATCTTGTGGCATGCTTCAAGTGATTATAGAATACTTAACGCTCTACCAGCGCTTTGAAACGTTTATTTAATTATACTTTACTGTGGATGTCTCACAGTCCTACCTGCAAAAAGATGCATGGACAACCGGTAAAGTATTTAAAAATAAACCGTTTACTCCAAACAGAAGACGCAAACgatagtttctattggacaattcGGGTATTCGTTTCGTTCCTTTTGCACTGTTTGCTTCCGTTTTGTTTTAAATGTTAAACTGTTTCTATAATGAATACGcccctgtgtaaatgcagccaatgTGTCAGGTATCATTAGAAATAAAGCTGCTCCAAATTC

Function

NR:

description
nuclear pore complex protein DDB_G0274915-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603505.2 True 2166 mRNA 0.41 4 58199387 58205370

Neighbor

gene id symbol gene type direction distance location
LOC110524140 LOC106613630 coding upstream 39253 58158521 ~ 58160134 (+)
LOC110524139 lsm4 coding upstream 74989 58120065 ~ 58124398 (+)
LOC110522977 NA coding upstream 113118 58084721 ~ 58086269 (+)
LOC110524136 LOC100136537 coding upstream 168493 58028761 ~ 58030894 (+)
LOC110524134 NA coding upstream 292727 57874805 ~ 57906660 (+)
LOC110524143 LOC106573897 coding downstream 106962 58312332 ~ 58370090 (+)
LOC118964627 NA coding downstream 196059 58401429 ~ 58404889 (+)
LOC118964530 NA coding downstream 275567 58480937 ~ 58482309 (+)
LOC110524147 LOC106613637 coding downstream 278673 58484043 ~ 58493673 (+)
LOC110524149 LOC106613638 coding downstream 294735 58500105 ~ 58505933 (+)
G419999 NA non-coding upstream 45547 58151976 ~ 58153840 (+)
G419995 NA non-coding upstream 57279 58141889 ~ 58142108 (+)
G419975 NA non-coding upstream 74648 58124669 ~ 58124739 (+)
G419989 NA non-coding upstream 87861 58109666 ~ 58111526 (+)
G419986 LOC106613627 non-coding upstream 92442 58105115 ~ 58106945 (+)
G420026 NA non-coding downstream 494 58205864 ~ 58210110 (+)
G420055 NA non-coding downstream 40620 58245990 ~ 58246538 (+)
G420062 NA non-coding downstream 63749 58269119 ~ 58269426 (+)
G420025 NA non-coding downstream 167750 58373120 ~ 58373991 (+)
G420093 NA non-coding downstream 174546 58379916 ~ 58380305 (+)
G419452 NA other upstream 299739 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 832050 57352343 ~ 57367627 (+)
LOC100135807 LOC106613594 other upstream 1241222 56943838 ~ 56958165 (+)
G418251 rtca other upstream 1274211 56923924 ~ 56925176 (+)
G418119 LOC106613588 other upstream 1469566 56726185 ~ 56729821 (+)
G420117 LOC100846954 other downstream 207753 58411240 ~ 58418268 (+)
G420634 NA other downstream 737358 58942728 ~ 58944217 (+)
LOC110524226 LOC106573564 other downstream 2488887 60694220 ~ 60695905 (+)
G423922 NA other downstream 3516167 61721537 ~ 61722024 (+)
G424079 NA other downstream 3900153 62105523 ~ 62105872 (+)

Expression


Co-expression Network