LOC110524163 (LOC106613647)


Basic Information

Item Value
gene id LOC110524163
gene name LOC106613647
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58756244 ~ 58802663 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603549.2
attcagaggttaGGAATTTGCATCCGATTGCTGTTTGTCAACCAATGATTTGACTCTACGACCGTGAGCACGCCTTGGATTAGGCAAAGATACAATGTAACCTCTGAATCAAAGCCATACGTTGATATCGAATAATATGTATACAACGGAATAGAAATATCACaatcaattgatatcagtttacTACTATATATGAAAAATACAATCAATAACCACCAGAACACCGTAGATTCAGGGGAAATCAGGAATATTTGTTCCGAGTGCAAAAACAAAACGGAAGCTGATTTGGCCCTGGTAAATCCCTTCCGGTGAAGTCCACATAGAGAGATCTTCAGCCACTAGTTCTTAAGTACAGCACTCACATGGACTCTGCTAAGTGGTGAGACTTCACTGACCTTCCCTGCACTGAGAAACGGCACAAGAGTCTTCCGGCTCGGGAGCTGTGGACAGTGTCCGAGTGTATGTCTCGCACCCTTCCCACTCTTCAAGAACCTACCCGTCAAAAGAGCTCTGCAGCCGCTGAGTTAGTTGGTCAGGCCTTCTATCCAGCCCCTCAGCATCAGGACTTAGAGAGGTGGCAGCCCACACCGGCCCCTGTGACTGGAGCTGTTcagggggaggggaaggagacCACTGACTGGTGCATCACTTTCCCTTGAGATGAAGCTTCAAGCCGTGATGGAGAATCTTCACAGGCAGCAGAGGGCCAAGTTGCTGATGGAACTGGAGCAGCAACAGCTGCAGCAGGGTGGCGCTCTGCAGGGTCATGGATGTACCTCCGCCCGCATTGGGGACGAGCTGATGGGAAGCCCTGCCCCCGAGACGGAGCACGCCCAGATGGCGGCGCTGGCAGCCATGAGAGCAGTGGCGGCAGGGCTGCAGAGGGCCTCAGACAGCCCCACTTCAGAGCGCAGCATtaagggacaggaggaggatgacgaggatgagaaaggagaggagcagTACAAGGATATGATGGACTCTGTGGAAGAGGAGCAGATAAAGCAGAAGTGGGATGAGGAGGACTttgagggggagatggaggaggactaCGAGGACGAGCTAGTCAACGAGGGCCTAACTACAGGCCGAGAGGCGGTGGCCCCGGGGAAGGGCATCCTGCTGCTGCCTCACCGCCAGCTGCACCCCCACTCCCAGCTGCTGAAGCCGGCCCGGCCCAGCACCGACCCAGACCAGGAGCCCCGAGCGGCCATCCTCCCCCCACACGGATCCCAGAGCCAGCTGGGTGGCCTGGACCATGGGGACTGGACCTACGAAGAGCAGTTCAGACAGCTCTATGAACTAGATGGCGACCCCAAGAGAAAAGAGTTTCTGGATGACCTATTCAGCTTCATGCAAAAGAGAGGAACCCCTGTGAACAGGATCCCCATCATGGCCAAGCAGGTCCTGGACCTGTACATGCTGTACCAGCTGGTGACAGAGAAGGGAGGCCTGGTGGAGGTCATCAACAAGAAGCTGTGGAGAGAGATCACTAAAGGACTCAACCTTCCTACCTCAATTACCAGTGCTGCCTTTACTCTCAGGACACAATACATGAAGTACCTGTACCCATATGAATGTGACAAGAGGAGCCTCAGCAACCCCAATGAGCTCCAGGCAGCTATCGACAGTAACCGGCGGGAAGGCCGCCGGCAGAGCTTCGGCAGCTCCCTCTTCACCTACTCCCCCAATGGGACCCCCACCATGCTGTCCTCCCCCAAGATGTCCATGCAGAACATGGGGATGAACGTGGCCACCAACGGAGCATCTCTCACTCCCATCCAGAAAATCAAGAAAGAAGATGAGGGCGGTCAGCCCCTGTCCGGCGTGGGCCGCATGTCTGGGCATCCTCTGGCGGGTCACTCGGTGGCAGTGGTGCAGGCGGCAGCGGCCCAGGCAGCCATGGCAGCCCAGGTAGCGGCTCTGGAGCAGCTGAGGGACAGACTGGAGGCGGGCGAGCCCCCGGAGAAGAAGATGGCTCTGCCTGCCGAGGAGCACCAGCGACTGCTGCAGAGAGCACTGCAGCACAACCTGCTGGCTATGACCGCCCAGATGCCCATGAACATCCGCATCAACAACCAAGgtGGCCGGCAGGACTCCGCTCTCAATCTCACCACAAATGGCATGAGCAGCATCAGTATGTCAGTGGAGCTCAACGGAGTCATGTACACCGGTATGCTTTTTGCTCAGGCAGCAGGGTCAGCCTCTTCAGGCCCCTCTGGATCATCAAGTAACAACAAAGCCCCTGGTGGGCGCAGTGGATCCCAGCCGCTCCCCTACACACCTACCTCAATCAACCCATCATCTTAACAACTCTGAACCCTTCACTTTTTGATGCCAAAACTAAAGCCAAAAAAAAACCCTACCAAATTTTCTAAATAGCCTATgccaaaaaaaaacatatacagaAAACCACAAACTAAAACTCTGTGTACTTCAAGTGGTCTATCTCAGGTTCTCTCATATCCTCTTCTGTTCTTTAGCCCAAATAAGTTTGAATAACCCAACAAAGAGACAGTATATGATTACGATATATGCACAGCCTGTGAATAATTTATTTCTACATAAATGCAGTGATTATCTaagaacaaataaaaataataggtTGGAAGGGTAATGCACTGTTTACACGTAACACAGCTACTGAATCACAATTaaacttattttatttttaacattATTATTCTcatctttattattattattattatcatcatcatcactaacaATATAGTTATTGCAAAACAATATATATTTGCATTCTATAAAGTAGAACATTTTAAATATCTTCTATTTTGAGTAGAAAAGCTTTAAAGATTTTATTTCTTCAGGGCATAACAAAGTAACATTGTGACCTCATGTTATAGAAAACCTCTACATTTGCATAATGCAGTCGCACACAAATCAATCTTTGCTGAGATTGTCTATTAATTGTACCTCAGACACAGGTTCACAAGTCTCTGTGGTCATGATGCAagatcattttattttttttcctgGTGGAAGTCAACAGGAATTGTTAATGCTCATTGGGACTTATATGTGCAGACATGTTGGTTTTTCTCAGGTGTCTGCCAGCTTGCTGTGAAACAATCACTTTGTATTTCACTGCTTTACGTTTCCGTCATAGTTACAAGCTATACAACTGTATTTGctggtttgagtgtttgttttgtttatgacCCGTTTAAACCATTTGTTTTTTCGTTTTAGAATGTAGTTTTCTATCCGGTTGTCTCATCAATTACCCAGGGTCCTCTGTACTTGTATAAGTAGAGGGATCATCTTCACTCTAAAGTTAGCTGCTCTTTTGGATGTCCTTACTTACAGCTTATAGTAGGGTGCAGGAATTCTTAGCTCTGCAATAGTGCTGCTTTAAAACAGAGGTTTGGGGTTGAAGTAGCTTTACTTAGGGGCTTGAAATCATGTCTTAAAAGCACCTACACATTGATATGACATCTTCATAACAACAAAAGCGTTTATGAATTTAGGTACGTGCTTGCATTACGTAGGGCTGCTTATGTAAAGGATTGGGGTGGAAACAGCCAATCAATTCCTGTCTTTGGGTCAGCACTGCTCTTCAAATTGACCTTTTGACCTCCTTGTCCCCAAGGCAACAACTGAGCATCTGGTCATTAAGAAAATATCTATTTTTATCAGATATCCATTGATTTGCAGCGCTCAGAAATATTTGCATTTTAACCACTAAGGTACTACAGCTACTACGAAGGTTGTTTCTGCATCTTCAAGAAACTGCATGGATTCACACTCTTTTCGAGTTCAGAATCCTCAGCGACGATTTTTGAGTTCATTGTAGCGACAATCAGGAGATGTTACAACATTGTATGTGTGTTCTGTTTTTCCACAATGAAGCCCCTCTACCTCAAAGACTATGATTAGACTATATCTCTTGTAAGATCATTACACAGTACCTTAATGAAGTAGTATATTGCGGTTATATCTTAAAGTGTGATATATTATGCTGCGTTTCATGACTTGGGTCTATACTGTACAATGTATTGACAGAGATAAGAGATTGTAGTTGGATTGTGGTCAGGGAATTCAGCTTTTGATAAATAATGGTTGGAAGGATAGATTATTGCAGACAATCATATTAAACCATTAATCTTTCCTCTATCATAGCTGATGATAATTACTTTGGATTTTTTTGGCAACATGCAATGGAGACCAGGGACGCCTCAGTCAGGAATACTTATTTTATTACTCTGGGATGCTGCCCCCTAGTGGACTTCTTTGTTACAGTGCACAATCATACGTTTCAGGGATGGATATGGTTGTTTTTGGGGGCCCCTATAGCTAGCGTACAGAAGAAGTGTTCTCTTGAAAAAGAATGACTTGCCTTTCCCCTGTTGATATTTGattgcaagcccccccccccccacccccatttaTTTTTCTCAACCAAAGTTAAGAGACTTACTTATTTCTAATCAGAATCATTCCATGAATTTTCAGCCTTGATATGAGATTTACCACTTGCTTGAACTATTTGTTTAGTAGATAGTATATCGCAGGGACAACCAAAACATATGTGGAGATGAAACAAAATGAAATGTTATGATAAAATATCTGCTGTAATTGCAAGATGCCTTATGCTGTGACAATTCTTCTATGAATGAACCTGTATAGATAACACTTCTGAAAATGCTTTGGATGGCTGTAGATATGAGTTACTTTGTTTTCACGTTTCAGTTCTTCCTTTAACAAATATGATATAGAAACCTAGCACAGAGATTACACATGTATCATATTATCAATAATAACAGTCATAATATGAATGACGATAATAGTATTGTGAGATTTGGGGAAGCACTAGGTTGACATACCGGCCTTGGTTTTGTTAACTATTTTGTTTTCATGTACAGTACTTGGAAATTCAGAGTATAAATGAGGCTTTTTGTCTTTTACTTCTCAGGAATATACTTCTACCTCCAGTTTTACAGATGTATCCCTGCTAGGGCTAAAGTTGGCTTCATTGGTGTTCTAGTTGGTTTTTCAGCTTTCAACTACTTCTTATAGATACAGGCACAAAAGTATTTTTTAATCTGTTCTGTACACGTGtgcaattttttttctccattattTTCTATGATGAACCTTTCCACTGAATGGGATGCTTCCCAAGATATGAGGAAACAAGTGAAGATGAAGTGTGGCATGTTGTGCCTCTTTAATAACCAGTTATTAGTATGGTGTAGAGCCCAAATAACAGATCGTCAACAACATGCTTTTTAGAATGTGTGACCTCTAATGCTTTTAACCATTTACTGAGGGGTGACAAACTATTCTTGCATATTTAATCaatatgtgtttgtgtgaatgtTTTTATTTGGGATTTTAATAAATATCACTTTTTCCTAGAATGTCA

Function

NR:

description
AT-rich interactive domain-containing protein 3A-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603549.2 True 5389 mRNA 0.44 9 58756244 58802663

Neighbor

gene id symbol gene type direction distance location
LOC110524162 LOC106613646 coding upstream 20252 58726531 ~ 58735992 (+)
LOC110524161 LOC106613992 coding upstream 45264 58699995 ~ 58710980 (+)
LOC110524157 LOC106613644 coding upstream 56352 58674258 ~ 58699892 (+)
LOC110524159 NA coding upstream 86270 58661910 ~ 58669975 (+)
LOC110524155 LOC106613642 coding upstream 99402 58647160 ~ 58656842 (+)
LOC110524164 LOC106613648 coding downstream 5907 58808570 ~ 58828505 (+)
LOC110524166 LOC100194687 coding downstream 39786 58842449 ~ 58849428 (+)
LOC110524168 LOC106613649 coding downstream 60406 58863069 ~ 58878412 (+)
LOC110522979 NA coding downstream 85551 58888214 ~ 58900154 (+)
LOC110524169 LOC106613650 coding downstream 109246 58911909 ~ 58936361 (+)
G420545 NA non-coding upstream 76380 58679586 ~ 58679864 (+)
LOC110524153 LOC106613641 non-coding upstream 112713 58620518 ~ 58646110 (+)
LOC110524154 NA non-coding upstream 136056 58579542 ~ 58620188 (+)
G420511 NA non-coding upstream 177624 58578104 ~ 58578620 (+)
G420606 NA non-coding downstream 231 58802894 ~ 58803093 (+)
G420608 NA non-coding downstream 1319 58803982 ~ 58804208 (+)
G420610 NA non-coding downstream 2416 58805079 ~ 58805298 (+)
G420621 NA non-coding downstream 28725 58831388 ~ 58831587 (+)
G420622 NA non-coding downstream 29728 58832391 ~ 58832640 (+)
G420117 LOC100846954 other upstream 339468 58411240 ~ 58418268 (+)
G419452 NA other upstream 856596 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 1388907 57352343 ~ 57367627 (+)
LOC100135807 LOC106613594 other upstream 1798079 56943838 ~ 56958165 (+)
G418251 rtca other upstream 1831068 56923924 ~ 56925176 (+)
G420634 NA other downstream 140065 58942728 ~ 58944217 (+)
LOC110524226 LOC106573564 other downstream 1891594 60694220 ~ 60695905 (+)
G423922 NA other downstream 2918874 61721537 ~ 61722024 (+)
G424079 NA other downstream 3302860 62105523 ~ 62105872 (+)
LOC110524265 LOC106613745 other downstream 3480489 62283054 ~ 62327772 (+)

Expression


Co-expression Network