LOC110524200 (LOC106613684)


Basic Information

Item Value
gene id LOC110524200
gene name LOC106613684
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 59920588 ~ 59930543 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603623.2
TGTCAGTCATGTTTTAAATGCTCTTTTAAATCCCCCAAAATAATTTACTAAGTCATTTTGTTTTAAGAGGTGGGACTAGACGGCATTTGATATTGGGTAAACCATCACATGCACGTGCCATCGATGAATTTAGATCCACGAGGTACAGTATACCCCCTAGCCCCTAGCAGTATGTCTTGTCTCAGGCCGCAAGTAGATGGCGTctgactacactacaacacaaccAATACAGCGAGATAGCTGAGTCACAGAACTAGGTAGGCTACTGTGGAAAAAGCAACAGTACAGAAACGGGTGTGAACACGGTTATAGAAGCACCTGGCAATTATCGGGAATCGTCTTGAAGATGTTGTCCATAACGTTGAAGACTCTTCAGCAGCAAACGTTTAAAATCGAAATAGATCCAGAACTAACCGTAAAAGCCCTGAAGGAGAAGATTGAGGTTGAGAAAGGGAAGGTTGGCTATCCAGCCGCAGGGCAAAAGCTCATCTATGCAGGCAAAATCTTGAATGATGACATACCTTTAAAAGACTACAACATTGACGAGAAAAACTTTGTGGTTGTCATGGTTACAAAGCCCAAACCTCCAGCTCCTCCACAGATTTCTCCTCAGgcaaccccagccccagcctctagccctgctcccGCCCCTGCGCCTCCTGTTGTTTCTGGGCTGTCCCTGTCAGACATTACCTGTTCTACTTCTCCTGCCCCCATGGAGATCTCAACCCTCTCCCCTACACCCACACCCGCCCCTGCCTCAAACCCCACAAAATCAGTGGAGCCCTCCACACCCCCATCCCCTGCACCAGCCCCTGCTTCTATTCCCCCTGAAGCTCTGGGGGCCAATGCAGCCCCAGCTCCTGCCGCAGCAGCATGCCCCGTCCCTGTCTCACCCTCAGAGGACAAGCCTCACGGGGAGCACCCCGAACTGCCCCTCGCCACTACGccagccctctcctcctctagCCTTGTTGATGACTTAAGTCTCTTGGAAGAAGCAGCATCGATACTGGTGACAGGACAAGCGTATGAGAATCTGGTGTCTGAAATCATGTCTATGGGATATGAAAGGGAGCAGGTTATTGCAGCGCTGCGAGCCAGTTACAACAACCCAGACAGAGCCGTGGAGTACCTGCTAATGGGGATTCCGTCCGAGGCTGACCTTCAGCCAGTGGAAGCGCTCCAACACAGAGTTCTGGCCAACCTCAATCCCACTGCCCCAGTTCCTGCCCCAGCCTCTGCTCCAGCCTCTGCTCCAGCCTCTGCTCCAGCTTCTGATCCAGCCACAGATATAGCCCAGCCCCCACCAGCAGCCACCaGCGCAGTGTCTTCAACCCAGCAGCCCCCCTCGTCTGGTGGGCTGACTGGTGGGCTAACTGGTGGGCTAACTGGTGGGCTTACTGGTGGAGGTACTGGGGGTGGGAACCCTCTGGAGTTCCTGAGGAACCAGCCACAATTCCAGCAGATGAGACAGATCATCCAGCAGAACCCAACTCTTCTTCCTGCCCTGCTCCAGCAGCTGGGCAGAGATAACCCCCAATTGCTGCAGcaaattaCCCAGCACCAGGAGAGGTTTGTGCAGATGCTGAATGAGCCTCAAGGAGGAGAGATGGTAGAGGAGGGAGCTGAGGCCCAGGGGGCGCCACAGACTAACTACATCCAGGTCACCCCACAAGAGAAGGAGGCCATCGAGAGGTTGAAAGCCTTGGGATTTCCAGAGGGACTTGTCATTCAAGCATATTTTGCATGTGAGAAGAACGAGAATCTAGCTGCCAATTTTCTGCTCCAACAAACATTTGATGACGAGTGAACGTGCCTGCCTTGGCATGAAGGGGAAGAATGGAGGGCTAGAGAATGAGTAATAGTGCTCCAGAATGTGCTTTTGAAGGAAGGAGTGGAAAAAGTTACCCAAAGTGACTGGTCTTCCCGGATGCTTTTCATTGGACAAAGACGTGATGTGTTGTTACTGTCAGCTAGGCCTTCTCCATTCTGAGTGTTAGATCtccgtggtctctctctctctctctctctctctttctctccctctctctctctctctctctccctctctctctcgctctctctctctctctctctctctctctctctctctctctctctctccctctctctctctctctctctctctctctctctctctctctctctctctctctcactgctgctattactgctCCTTGTGCCGTATCCATCTATAGAGTTACAGTGGGCAGCTTGCCCTCACCATATATTGCTTTTCAACCCCTCGCAAATAAAACGCCAAGCATACATTAGCTGGTTGATTCATATTTGTAATGTGAGCCTCATCTCCTGGGAAAATATACTTGAGTGTCCTGTGATAAAATGACAAAACCAGCAAAATGGCCACGGATCTCAAATGTGTTGTTTGTTTTCTAGGCCGAGGCTGCGAATCCGACATTTCTCGACCCTCCGTTCTGACAGCTAAAGGTCCCGAAGCTTCTGCGCATGTGTGTgattctctactctactcacagTCTCTGCTCTTTTAatacagaacccccccccccttcacattTCTCACTGTCCATCGTGAATGATAATTCTTTCATTTTTACCGGTGAAATGCCCATGCAGAATCTGCATACCAACCTTgtgatctcaatcagtttcatggggatatGCATTTAGATCTTCTTATACCGTGTTGTTTAGAATTATGTACAGTGATTGACTTTTAGAGCAGACGGTACTTAGTTTCAATCAAAGCAAATATAATGCCAAGTGGAGCACACTTGTGTTTTGGCCACATGAGAGAAAAATCCGACCCTTCACACAATCATCTTAAAATCTCATACGGAATTAGGTGTTTTTTGTCTTGTCTTACAGTAACGTTATACTATGCTATTATATTTGGCCCTGTTATGTTGAACACTATCATTATGTGATGTtgcagacattgattcagctttgatctaactgTAGTAATAAAGCCCCGTTCACCAGAGCAGAGCAGCCTGTTCTCTATGAGTAGAGCGGAGACTGTACGTAAAGAAGAGAATTCCGCACATATGCAGAAGCTTCTTATTTCTCTCAGCTGATCATTACTGTCCAACCTTTCCAATATGTTTGTCTTCGTCAGACAAAGGGAACTGGGATGTTTTGCCCGTGAAGTGTCCTATTAATGTTGGAGAGTTGCTTTGTCACTTTATTTGACTGTTACAAAGGAAACATTTCTTTGTAGAAGAGAAGGATGTTCTGTGATTGATGTGTCATCGTATTCAAATATTATTACACTGTAAAATGAGACATGGTAGATGGTAGGGAATATTTGGATTTGGTTCCAGATGTGTAGTTTCAAGGTACCAAATGATTTTACAAAAGGAAGTTTTAGCCAcatagttgttgttttttcttcgATATCATTGCTCAACAGTTGAAGGTTAGTTAAAGCTGAAAGTCAATTGAGCCATGTCCTTAATATTATTTTATAATCACTTTAAGTATATAACAAGATTCTGCTCTCTCTGgacactttttttgtgtgtgtgttttgattgcCCCTGATCCTTAATGTATTATATCAAAAGAAATCATGCTGCAAGTTTTTTTAACCATGTAATTGCTCCTTCATGCCTCGTGGTTTGTCTCATTTTGTTGAAGAGTAATTGTTTGTTTGTGCAAAGTCATGTACAGCTTTCAAAGGTCTATCGTTAGTCAATATGTATTTTTGTTTTTGCATAGATGAGTGCTATAGGATTTATGTTGCCTATCAACAGTAAACACCCATCTCATAAAAGGTGCTAGAGTGAAGGTAAGTTCTGGACGTCCTATAAGCCAAAAGAAAACAAGTAAACATCCCACAAAACTGGCCTTGGCTTTTTATTTTTCTCTTGTGTGTAGATGGGAAAGATTGACCCAGCAGAGTTTCTGACTGTACATGGAGTTGATTTCTGCTTTTGCAAAAGGAAGCACTTTAATGTGAAGACTGTTGCTCTGAGATATGTAGGGTTGGTTAATTGCATGAGTTTATAACAGAGGCTCTAGCTGAGCTATGGCATGCTGTGGAACCACAGGAGTGATGATTTCAGCATCTAacttttagtttttttgttttcttttgttttctTTGAAACTACAATAAAGCAAAAGGGTTTTAGACTTAAATGCACCACTTGAAGGTTTATTTAAGGTTATTATTTCAGCGTTATGTCAAATAAATAGCTTTTTACAGAG

Function

NR:

description
UV excision repair protein RAD23 homolog B-like

GO: NA

KEGG:

id description
K10839 RAD23, HR23; UV excision repair protein RAD23

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603623.2 True 4218 mRNA 0.45 10 59920588 59930543

Neighbor

gene id symbol gene type direction distance location
LOC110524201 LOC106613685 coding upstream 412 59915582 ~ 59920176 (+)
LOC110524198 LOC106613681 coding upstream 16554 59889619 ~ 59904034 (+)
LOC110524197 LOC106613680 coding upstream 40019 59869690 ~ 59880569 (+)
LOC110524196 LOC106613678 coding upstream 82361 59827075 ~ 59838227 (+)
LOC110524195 LOC106613677 coding upstream 98618 59802028 ~ 59821970 (+)
LOC110524202 NA coding downstream 101 59930644 ~ 59968946 (+)
malt2 LOC106613687 coding downstream 202693 60133236 ~ 60161934 (+)
LOC110524208 LOC106613692 coding downstream 235065 60165608 ~ 60180274 (+)
LOC118964531 NA coding downstream 293254 60223797 ~ 60267847 (+)
LOC110524211 tpm4 coding downstream 437848 60368391 ~ 60395175 (+)
G421677 NA non-coding upstream 62123 59853434 ~ 59858465 (+)
G421673 NA non-coding upstream 75567 59844379 ~ 59845021 (+)
G421672 NA non-coding upstream 79280 59840540 ~ 59841308 (+)
G421731 NA non-coding downstream 57478 59988021 ~ 59988310 (+)
G421748 NA non-coding downstream 78812 60009355 ~ 60009830 (+)
G421788 NA non-coding downstream 147347 60077890 ~ 60078373 (+)
G421799 NA non-coding downstream 158089 60088632 ~ 60089109 (+)
G421806 NA non-coding downstream 167220 60097763 ~ 60097995 (+)
G420634 NA other upstream 976371 58942728 ~ 58944217 (+)
G420117 LOC100846954 other upstream 1503812 58411240 ~ 58418268 (+)
G419452 NA other upstream 2020940 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 2553251 57352343 ~ 57367627 (+)
LOC100135807 LOC106613594 other upstream 2962423 56943838 ~ 56958165 (+)
LOC110524226 LOC106573564 other downstream 763714 60694220 ~ 60695905 (+)
G423922 NA other downstream 1790994 61721537 ~ 61722024 (+)
G424079 NA other downstream 2174980 62105523 ~ 62105872 (+)
LOC110524265 LOC106613745 other downstream 2352609 62283054 ~ 62327772 (+)
G425224 NA other downstream 3114547 63045090 ~ 63051530 (+)

Expression


Co-expression Network