G358124


Basic Information

Item Value
gene id G358124
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 1299517 ~ 1302598 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU406647
GGTGTTTTATACAAGCTTTATTACAACTTGGTTAACAGCTGTACATGTCAGAGCGTAGGAAGCACATTTTATCAACAAGTTTCAAATGGACAGGTAACTATGACCACTCATTTCCTCCTCCACTGTTTGTTAGTCCCATACAGTGTGTACATATTATACAAGCAGCAATATAAAACACTGGCAAATGGAAAGGTTATTTGCTACTTTATTTTTTGATGTAAAATAAGTCTTTCCTATGAATAAAAAATACAGCAACCATAAAACCTGGCGATTAAGTTCTGACTGAAAAGCCTCagttctataaaaaaaaaaaagttttattttcTCCTAGAGGTTTTTTTAGCCTAGGAAAAGCAGATTGAACGCTACGCTCACCATTGTTTGAAACATTCAGTCTGGTGTAACTATGCTAGAGGTTTATTGTCCTGTGTAgaacactagcctggtcccagatcactTGTCAAGACAGCAcacactgatctgggaccaggctaggagactaaccgatctgggaccaggccaggagactaaccgatctgggaccaggctaggagactaaccgatctgggaccaggctaggagactaaccgatctgggaccaggctaggagactaaccgatctgggaccaggccaggagactaaccgatctgggaccaggccaggagactaaccgatctgggaccaggccaggagactaaccgatctgggaccaggctaggagactaactgatctgggaccaggctaggagactaactgatctgggaccaggccaggAGACTAatcgatctgggaccaggccaggACACTAatcgatctgggaccaggccaggagactaaccgatctgggaccaggccaggagactaaccgatctgggaccaggccaggagactaaccgatctgggaccaggctaggagactaaccgatctgggaccaggctaggagactaaccgatctgggaccaggccaggagactaaccgatctgggaccaggccaggagactaaccgatctgggaccaggccaggagactaaccgatctgggaccaggccaggAGACTAACCGATCTGGGACCAGTTGTAACTTTAGTAAAACTATACTTATAGCCTGAGGTTATAATGCATTTTgatgcagttataatgcattGTAAGCCTTGTCATAAGCAAGTAGGACCCTACCTTATCATCTCATAACAGCCTGGATGAAATACGAGCCATTGGGAGTCAGTTGACATGGAGAGACATAATATATTATCCGACTTATAAAACATTATAAAGGCTCATAGGTGCTTATAACAAGTTCTAAAGACTCATATCTACTGAGTAAAGTGTTTCCATATTATTATTTCTTCCAGCGCTACTCGGTTCTGATTAATGGCAAGTGGTTTTGAAACTATTATTGTGTCCCaataggcaccctattccctatatagtgcactacttttgacccctaatccctacatagtgcacttttgaccagggctcatagggggatagggtgccattggggatacagacagtgGCTCTATGGTTAATCAAGGagacatgcaaaaaaaaaacacacaaaaaaacaggaCAGACAGTTAGGAGACACGTTGCTCTACCAATCATATCACCACATGTCAGGAGACTAGTATTTAACACAAGTAGAGACACGTTGCTCTACCAATCATATCACCACATGTCAGGAGACTAGTATTTAACACAAGTAGAGACACGTTGCTCTACCAATCATAATCACCACATGTCAGGAGACTAGTATTTAACACAAGTAGAGACACGTTGCTCTACCAATCATAATCACCACATGTCAGGAGACTAGTATTTAACACAAGTAGAGACACGTTGCTCTACCAATCATAATCACCACATGTCAGGAGACTAGTATTTAACACAAGTAGAGACACGATGCCCTACCAATCATAATCATGTCTGGACACTAGTATTTAACACAAGTAGTAAAAGCCATACAAAGTTACATAATAATATGGACACATCTTTTTGTTATGAGCTGAAAAACACACAGTATCAGCAACAAGTCAACAAGTCAATAAGTCAACAAGTCTACTCTTCCTCACACCGGTTGGTTTTTACACTCGAGGCGAAAGCACTTTCAACATGTTCAGGATATAACATGATAGGAAAGATCCTCTTTGACTTCCTACCCGTCTGTCCATTGGTGCCACTTCTGAGGTCGTGTTCATTAGTGGCGCAGCGGGTCTAGAGGCATCACTatagacccgggttcgatcccgggacccgcccagcgtcgtccgggctaggggagggtttgaacggggtaggccgtcattgtaaataagaatttgttcttgcttagttaaataaaggttaaataaaaaattaaaacgtTTGTTTGTTATTGTACTAACATGAGTGTTTTATACTGGACAGGTGGAGGTAGAAcatccctgtttcagtccgttttctaacgtttggtgcctaatgaacatgacccggGACAGGGCAGTCTTACTATGTGGGCCATCTGCTAATGAACTACGACCCGGGACAGGGCAGTCTTACTACGTGGGCCATCTGCTAATGAACCACGACCCGG
>TU406648
GGTGTTTTATACAAGCTTTATTACAACTTGGTTAACAGCTGTACATGTCAGAGCGTAGGAAGCACATTTTATCAACAAGTTTCAAATGGACAGGTAACTATGACCACTCATTTCCTCCTCCACTGTTTGTTAGTCCCATACAGTGTGTACATATTATACAAGCAGCAATATAAAACACTGGCAAATGGAAAGGTTATTTGCTACTTTATTTTTTGATGTAAAATAAGTCTTTCCTATGAATAAAAAATACAGCAACCATAAAACCTGGCGATTAAGTTCTGACTGAAAAGCCTCagttctataaaaaaaaaaaagttttattttcTCCTAGAGGTTTTTTTAGCCTAGGAAAAGCAGATTGAACGCTACGCTCACCATTGTTTGAAACATTCAGTCTGGTGTAACTATGCTAGAGGTTTATTGTCCTGTGTAgaacactagcctggtcccagatcactTGTCAAGACAGCAcacactgatctgggaccaggctaggagactaaccgatctgggaccaggccaggagactaaccgatctgggaccaggctaggagactaaccgatctgggaccaggctaggagactaaccgatctgggaccaggctaggagactaaccgatctgggaccaggctaggagactaaccgatctgggaccaggccaggagactaaccgatctgggaccaggccaggagactaaccgatctgggaccaggccaggagactaaccgatctgggaccaggctaggagactaactgatctgggaccaggccaggAGACTAatcgatctgggaccaggccaggACACTAatcgatctgggaccaggccaggagactaaccgatctgggaccaggccaggagactaaccgatctgggaccaggccaggagactaaccgatctgggaccaggctaggagactaaccgatctgggaccaggctaggagactaaccgatctgggaccaggccaggagactaaccgatctgggaccaggccaggagactaaccgatctgggaccaggccaggagactaaccgatctgggaccaggccaggAGACTAACCGATCTGGGACCAGTTGTAACTTTAGTAAAACTATACTTATAGCCTGAGGTTATAATGCATTTTgatgcagttataatgcattGTAAGCCTTGTCATAAGCAAGTAGGACCCTACCTTATCATCTCATAACAGCCTGGATGAAATACGAGCCATTGGGAGTCAGTTGACATGGAGAGACATAATATATTATCCGACTTATAAAACATTATAAAGGCTCATAGGTGCTTATAACAAGTTCTAAAGACTCATATCTACTGAGTAAAGTGTTTCCATATTATTATTTCTTCCAGCGCTACTCGGTTCTGATTAATGGCAAGTGGTTTTGAAACTATTATTGTGTCCCaataggcaccctattccctatatagtgcactacttttgacccctaatccctacatagtgcacttttgaccagggctcatagggggatagggtgccattggggatacagacagtgGCTCTATGGTTAATCAAGGagacatgcaaaaaaaaaacacacaaaaaaacaggaCAGACAGTTAGGAGACACGTTGCTCTACCAATCATATCACCACATGTCAGGAGACTAGTATTTAACACAAGTAGAGACACGTTGCTCTACCAATCATATCACCACATGTCAGGAGACTAGTATTTAACACAAGTAGAGACACGTTGCTCTACCAATCATAATCACCACATGTCAGGAGACTAGTATTTAACACAAGTAGAGACACGTTGCTCTACCAATCATAATCACCACATGTCAGGAGACTAGTATTTAACACAAGTAGAGACACGTTGCTCTACCAATCATAATCACCACATGTCAGGAGACTAGTATTTAACACAAGTAGAGACACGATGCCCTACCAATCATAATCATGTCTGGACACTAGTATTTAACACAAGTAGTAAAAGCCATACAAAGTTACATAATAATATGGACACATCTTTTTGTTATGAGCTGAAAAACACACAGTATCAGCAACAAGTCAACAAGTCAATAAGTCAACAAGTCTACTCTTCCTCACACCGGTTGGTTTTTACACTCGAGGCGAAAGCACTTTCAACATGTTCAGGATATAACATGATAGGAAAGATCCTCTTTGACTTCCTACCCGTCTGTCCATTGGTGCCACTTCTGAGGTCGTGTTCATTAGTGGCGCAGCGGGTCTAGAGGCATCACTatagacccgggttcgatcccgggacccgcccagcgtcgtccgggctaggggagggtttgaacggggtaggccgtcattgtaaataagaatttgttcttgcttagttaaataaaggttaaataaaaaattaaaacgtTTGTTTGTTATTGTACTAACATGAGTGTTTTATACTGGACAGGTGGAGGTAGAAcatccctgtttcagtccgttttctaacgtttggtgcctaatgaacatgacccggGACAGGGCAGTCTTACTATGTGGGCCATCTGCTAATGAACTACGACCCGGGACAGGGCAGTCTTACTACGTGGGCCATCTGCTAATGAACCACGACCCGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU406647 False 2578 lncRNA 0.45 2 1299517 1302598
TU406648 True 2578 lncRNA 0.45 2 1299517 1302598

Neighbor

gene id symbol gene type direction distance location
LOC110523084 rnf170 coding downstream 77823 1214832 ~ 1221694 (-)
LOC118964538 NA coding downstream 171899 1090907 ~ 1127618 (-)
LOC110523115 LOC106572830 coding downstream 248439 1036859 ~ 1051078 (-)
LOC110523114 thap1 coding downstream 284143 1012745 ~ 1015374 (-)
LOC110523113 mob3b coding downstream 294611 940199 ~ 1004906 (-)
LOC110517810 trabd2a coding upstream 33069 1335667 ~ 1475700 (-)
LOC110523086 LOC106572646 coding upstream 606351 1908949 ~ 1910347 (-)
LOC118964539 NA coding upstream 706536 2009134 ~ 2060858 (-)
rassf6 LOC106572546 coding upstream 1854085 3154684 ~ 3185209 (-)
lpar1 LOC106572527 coding upstream 2089569 3392167 ~ 3453780 (-)
G358127 NA non-coding downstream 11283 1287013 ~ 1288234 (-)
G358123 NA non-coding downstream 13910 1284924 ~ 1285607 (-)
G358106 NA non-coding downstream 43638 1253880 ~ 1255879 (-)
G358103 NA non-coding downstream 48952 1246588 ~ 1250565 (-)
G358099 NA non-coding downstream 64326 1234685 ~ 1235191 (-)
G358129 NA non-coding upstream 2424 1305022 ~ 1308006 (-)
G358133 NA non-coding upstream 12238 1314836 ~ 1315053 (-)
G358137 NA non-coding upstream 19854 1322452 ~ 1322766 (-)
G358138 NA non-coding upstream 23232 1325830 ~ 1326245 (-)
G358139 NA non-coding upstream 24000 1326598 ~ 1326964 (-)
G358126 NA other downstream 866 1295528 ~ 1298651 (-)
G357797 NA other downstream 480770 817154 ~ 818747 (-)
ythdc1 ythdc1 other downstream 562949 724581 ~ 759382 (-)
G357751 NA other downstream 607819 690811 ~ 691698 (-)
G357278 NA other downstream 1054493 244749 ~ 245024 (-)
G358446 NA other upstream 542226 1834553 ~ 1893316 (-)
G359712 NA other upstream 1771947 3074545 ~ 3080338 (-)
G359752 NA other upstream 1889915 3192513 ~ 3193105 (-)
G359989 NA other upstream 2322750 3625348 ~ 3625776 (-)
G360015 NA other upstream 2411634 3714232 ~ 3715552 (-)

Expression


Co-expression Network