G385816


Basic Information

Item Value
gene id G385816
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 28282361 ~ 28282569 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU438228
GCCGTATACCTCTGGCAATCCTCCCTGTTTAGATACCTGTGGTGAATGCTGATGAACACTCTCCCGTGCCAGCCAACGGGAAGTGAGATGATGAAAATAGAATAACTGCCACGCTTGGTGGAACCATTATGTAAATGAAGTTGGGAATCCTCTGGCAGGAAGCTAGGTCTACTCCATTTGCTTGGTTTGGCATTCAACAAATATTTCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU438228 True 209 lncRNA 0.46 1 28282361 28282569

Neighbor

gene id symbol gene type direction distance location
LOC118964581 NA coding upstream 18026 28261777 ~ 28264335 (+)
LOC110518653 LOC106566474 coding upstream 20785 28257967 ~ 28261576 (+)
LOC110523538 NA coding upstream 40691 28239115 ~ 28241670 (+)
ftsj1 LOC106566467 coding upstream 46861 28228013 ~ 28235500 (+)
LOC110523534 LOC106566461 coding upstream 169582 28109822 ~ 28112779 (+)
LOC118964582 NA coding downstream 15154 28297723 ~ 28303108 (+)
rnf180 LOC106566588 coding downstream 124155 28406724 ~ 28416408 (+)
rgs7bpb LOC106566593 coding downstream 135653 28418222 ~ 28423947 (+)
ghr1 ghr1 coding downstream 156509 28439078 ~ 28463949 (+)
LOC110523547 ccdc152 coding downstream 181530 28464099 ~ 28467134 (+)
G385812 NA non-coding upstream 4905 28277221 ~ 28277456 (+)
G385809 NA non-coding upstream 7115 28274957 ~ 28275246 (+)
G385733 NA non-coding upstream 25537 28253864 ~ 28256824 (+)
G385730 NA non-coding upstream 31026 28251023 ~ 28251335 (+)
G385726 NA non-coding upstream 36818 28245238 ~ 28245543 (+)
G385817 NA non-coding downstream 1269 28283838 ~ 28284055 (+)
G385819 NA non-coding downstream 9512 28292081 ~ 28292281 (+)
G385831 NA non-coding downstream 32583 28315152 ~ 28315429 (+)
G385832 NA non-coding downstream 33166 28315735 ~ 28315958 (+)
G385171 LOC106566130 other upstream 377630 27904467 ~ 27904731 (+)
G385053 NA other upstream 575283 27706714 ~ 27707078 (+)
LOC110522888 LOC106566402 other upstream 598968 27675352 ~ 27719165 (+)
G383794 LOC106566282 other upstream 1618748 26661838 ~ 26663613 (+)
LOC110522865 LOC106567246 other upstream 1821665 26437517 ~ 26502284 (+)
G385805 NA other downstream 134036 28416605 ~ 28417555 (+)
spag8 LOC106566715 other downstream 643708 28926263 ~ 28931410 (+)
tbx5a LOC106566939 other downstream 1459231 29741800 ~ 29763439 (+)
G387516 NA other downstream 1614417 29896986 ~ 29898134 (+)
G388019 NA other downstream 2004382 30286951 ~ 30287824 (+)

Expression


Co-expression Network